Data search
Results for MligTC455_49478
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_49478 | 128 | 2.67 | Mlig455_057167 | Neo: - Age: Up-Down-Up |
SCARB2 | Mlig455_057167 {REF} {Length: 3342} {TRANSSPLICED} {Pfam: CD36 family [PF01130.23, score=349.7]} {Human: ENSG00000138760, SCARB2, scavenger receptor class B member 2, [Score=208, Expect=3e-60]; ENSG00000073060, SCARB1, scavenger receptor class B member 1, [Score=207, Expect=2e-59]} {Mouse: ENSMUSG00000029426, Scarb2, scavenger receptor class B, member 2, [Score=210, Expect=5e-61]} {Dmel: FBgn0010435, emp, epithelial membrane protein, [Score=185, Expect=9e-52]} {Celegans: WBGene00013039, scav-3, SCAVenger receptor (CD36 family) related, [Score=144, Expect=4e-37]} {Smed: dd_Smed_v6_2951_0_1, dd_Smed_v6_2951_0_1, [Score=261, Expect=4e-80]} {RNA1509_12751, RNA1509_43859} {RNA1310_8968, RNA1509_43859} {RNA1509_43859, RNA815_16016} |
Cumulative graph for MligTC455_49478
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -3.867 | 2.234 | 0.47333 | 1.00000 | |
| RegionR2 | 1.801 | 2.234 | 0.07684 | 0.33883 | |
| RegionR3 | 0.208 | 2.234 | 0.77524 | 1.00000 | |
| RegionR4 | 0.785 | 2.234 | 0.48871 | 0.81593 | |
| RegionR5 | 0.697 | 2.234 | 0.46059 | 0.82287 | |
| RegionR6 | -0.55 | 2.234 | 0.96305 | 1.00000 | |
| RegionR7 | 0.702 | 2.234 | 0.56754 | 1.00000 | |
| RegionR8 | 0.224 | 2.234 | 0.81232 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -1.035 | 2.234 | 0.99990 | 1.00000 | |
| RegenerationR2 | -1.385 | 2.234 | 0.00865 | 0.14841 | |
| RegenerationR3 | -0.332 | 2.234 | 0.65037 | 0.92923 | |
| RegenerationR4 | -0.256 | 2.234 | 0.73531 | 0.96608 | |
| RegenerationR5 | -0.007 | 2.234 | 0.98371 | 1.00000 | |
| RegenerationR6 | 0.482 | 2.234 | 0.57213 | 0.85298 | |
| RegenerationBL | 0.688 | 2.234 | 0.45801 | 0.82550 | |
| RegenerationTP | -0.319 | 2.234 | 0.78641 | 1.00000 |
Genes with expression patterns similar to MligTC455_49478
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_49478 | 128 | 2.67 | Mlig455_057167 | Neo: - Age: Up-Down-Up |
SCARB2 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_057167 {REF} {Length: 3342} {TRANSSPLICED} {Pfam: CD36 family [PF01130.23, score=349.7]} {Human: ENSG00000138760, SCARB2, scavenger receptor class B member 2, [Score=208, Expect=3e-60]; ENSG00000073060, SCARB1, scavenger receptor class B member 1, [Score=207, Expect=2e-59]} {Mouse: ENSMUSG00000029426, Scarb2, scavenger receptor class B, member 2, [Score=210, Expect=5e-61]} {Dmel: FBgn0010435, emp, epithelial membrane protein, [Score=185, Expect=9e-52]} {Celegans: WBGene00013039, scav-3, SCAVenger receptor (CD36 family) related, [Score=144, Expect=4e-37]} {Smed: dd_Smed_v6_2951_0_1, dd_Smed_v6_2951_0_1, [Score=261, Expect=4e-80]} {RNA1509_12751, RNA1509_43859} {RNA1310_8968, RNA1509_43859} {RNA1509_43859, RNA815_16016} |
| 2. | MligTC455_11611 | 519 | 10.8 | Mlig455_070577 | Neo: - Age: Down-Up-Down |
2.571 | - | - | 0.860 | 0.964 | 0.747 | - | Mlig455_070577 {REF} {Length: 3316} {TRANSSPLICED} {RNA1509_27526, RNA1509_42539} {RNA1310_21583, RNA1509_42539} {RNA1509_42539, RNA815_12355} | |
| 3. | MligTC455_19846 | 421 | 8.77 | Mlig455_008356 | Neo: - Age: Down-Up-Up Region-enriched R2: 2.552/0.00697 |
1.799 | - | 0.845 | - | - | 0.954 | - | Mlig455_008356 {REF} {Length: 1722} {Pfam: Phosphotyrosine interaction domain (PTB/PID) [PF00640.25, score=29.7]; Phosphotyrosine interaction domain (PTB/PID) [PF14719.8, score=25.1]} {Dmel: FBgn0035431, CG14968, [RH, Score=80.5, Expect=1e-17]} {Smed: dd_Smed_v6_16269_0_1, dd_Smed_v6_16269_0_1, [RH, Score=52.0, Expect=1e-07]} {RNA1509_28129} {RNA1310_26006, RNA1509_28129} {RNA1509_28129, RNA815_14793} | |
| 4. | MligTC455_45653 | 96 | 2 | Mlig455_010906 | Neo: - Age: - |
1.662 | - | - | - | 0.704 | 0.958 | - | Mlig455_010906 {REF} {Length: 1098} {RNA1509_6080} {RNA1310_201.1} {RNA815_6427.2} | |
| 5. | MligTC455_32460 | 777 | 16.19 | Mlig455_012616 | Neo: - Age: logFC(26M/2M)=0.288 |
BLVRB | 0.969 | - | - | - | - | 0.969 | - | Mlig455_012616 {REF} {Length: 2230} {TRANSSPLICED} {Pfam: NAD(P)H-binding [PF13460.8, score=113.9]; NmrA-like family [PF05368.15, score=40.8]; Semialdehyde dehydrogenase, NAD binding domain [PF01118.26, score=19.1]} {Human: ENSG00000090013, BLVRB, biliverdin reductase B, [Score=59.7, Expect=2e-10]} {Mouse: ENSMUSG00000040466, Blvrb, biliverdin reductase B (flavin reductase (NADPH)), [RH, Score=62.4, Expect=1e-11]} {RNA1509_43611} {RNA1310_49378} {RNA815_25402} |
| 6. | MligTC455_16359 | 283 | 5.89 | Mlig455_000559 | Neo: - Age: - |
ZMPSTE24 | 0.966 | - | - | - | 0.966 | - | - | Mlig455_000559 {REF} {Length: 5254} {TRANSSPLICED} {Pfam: CAAX prenyl protease N-terminal, five membrane helices [PF16491.7, score=198.3]; Peptidase family M48 [PF01435.20, score=147.3]; DEAD/DEAH box helicase [PF00270.31, score=83.0]; Helicase conserved C-terminal domain [PF00271.33, score=70.5]; Amidohydrolase family [PF01979.22, score=49.6]; Amidohydrolase family [PF07969.13, score=29.1]} {Human: ENSG00000084073, ZMPSTE24, zinc metallopeptidase STE24, [RH, Score=429, Expect=5e-137]} {Mouse: ENSMUSG00000043207, Zmpste24, zinc metallopeptidase, STE24, [RH, Score=440, Expect=2e-141]} {Dmel: FBgn0034176, ste24a, prenyl protease type I, [RH, Score=377, Expect=4e-118]} {Celegans: WBGene00001405, fce-1, CAAX prenyl protease 1 homolog, [RH, Score=376, Expect=4e-118]} {Smed: dd_Smed_v6_5271_0_1, dd_Smed_v6_5271_0_1, [RH, Score=436, Expect=3e-140]} {RNA1509_27788} {RNA1310_12834} {RNA815_2575} |
| 7. | MligTC455_36151 | 162 | 3.36 | Mlig455_069007 | Neo: - Age: Down-Down-Up |
0.966 | - | - | - | - | - | 0.966 | Mlig455_069007 {REF} {Length: 3001} {Pfam: Lecithin retinol acyltransferase [PF04970.15, score=18.9]} {RNA1509_54264} {RNA1310_5666.1} {RNA815_1552} | |
| 8. | MligTC455_30365 | 335 | 6.99 | Mlig455_005426 | Neo: - Age: - |
C20orf194 | 0.962 | - | - | 0.962 | - | - | - | Mlig455_005426 {REF} {Length: 2028} {TRANSSPLICED} {Human: ENSG00000088854, C20orf194, chromosome 20 open reading frame 194, [Score=100, Expect=2e-21]} {Mouse: ENSMUSG00000027309, 4930402H24Rik, RIKEN cDNA 4930402H24 gene, [RH, Score=108, Expect=4e-24]} {Smed: dd_Smed_v6_10121_0_1, dd_Smed_v6_10121_0_1, [Score=88.2, Expect=5e-18]} {RNA1509_29925} {RNA1310_1263.1} {RNA815_15442} |
| 9. | MligTC455_16898 | 256 | 5.32 | Mlig455_054659 | Neo: - Age: logFC(26M/2M)=0.653 |
0.96 | - | - | 0.960 | - | - | - | Mlig455_054659 {REF} {Length: 883} {RNA1509_34832} {RNA1310_22335} {RNA815_10376} | |
| 10. | MligTC455_10382 | 39 | 0.82 | Mlig455_049772 | Neo: - Age: - |
0.958 | - | - | - | 0.958 | - | - | Mlig455_049772 {REF} {Length: 710} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_32649} | |
| 11. | MligTC455_50332 | 167 | 3.47 | Mlig455_045442 | Neo: - Age: - |
TGFBR1 | 0.958 | - | - | - | - | 0.958 | - | Mlig455_045442 {REF} {Length: 2893} {Pfam: Protein kinase domain [PF00069.27, score=95.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=92.0]; ABC1 atypical kinase-like domain [PF03109.18, score=30.4]; Transforming growth factor beta type I GS-motif [PF08515.14, score=20.1]} {Human: ENSG00000106799, TGFBR1, transforming growth factor beta receptor 1, [Score=261, Expect=4e-81]; ENSG00000135503, ACVR1B, activin A receptor type 1B, [Score=254, Expect=3e-78]} {Mouse: ENSMUSG00000007613, Tgfbr1, transforming growth factor, beta receptor I, [Score=263, Expect=3e-82]; ENSMUSG00000000532, Acvr1b, activin A receptor, type 1B, [Score=253, Expect=2e-77]} {Dmel: FBgn0011300, babo, baboon, [Score=259, Expect=3e-79]} {Celegans: WBGene00000897, daf-1, Cell surface receptor daf-1, [Score=187, Expect=1e-51]} {Smed: dd_Smed_v6_3426_0_1, dd_Smed_v6_3426_0_1, [Score=229, Expect=2e-67]} {RNA1509_17304, RNA1509_38608} {RNA1310_10744, RNA1509_38608} {RNA1509_38608, RNA815_11070} |
| 12. | MligTC455_19807 | 190 | 3.96 | Mlig455_048803 | Neo: - Age: Up-Down-Down |
B3GALT5 | 0.954 | - | - | - | 0.954 | - | - | Mlig455_048803 {REF} {Length: 3704} {TRANSSPLICED} {Pfam: Galactosyltransferase [PF01762.23, score=149.4]; Fringe-like [PF02434.18, score=19.1]} {Human: ENSG00000183778, B3GALT5, beta-1,3-galactosyltransferase 5, [RH, Score=135, Expect=4e-36]} {Mouse: ENSMUSG00000074892, B3galt5, UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5, [RH, Score=130, Expect=2e-34]} {Dmel: FBgn0000221, brn, brainiac, [RH, Score=175, Expect=1e-51]} {Celegans: WBGene00000270, bre-5, Beta-1,3-galactosyltransferase bre-5, [RH, Score=112, Expect=4e-28]} {Smed: dd_Smed_v6_8163_0_1, dd_Smed_v6_8163_0_1, [Score=151, Expect=4e-42]} {RNA1509_28243} {RNA1310_11673.2} {RNA815_12329} |
| 13. | MligTC455_39390 | 132 | 2.75 | Mlig455_038805 | Neo: Irradiation Age: Up-Down-Down Region-enriched R5: 2.144/0.02134 |
0.954 | - | - | - | 0.954 | - | - | Mlig455_038805 {REF} {Length: 2515} {RNA1509_29562} {RNA1310_8307, RNA1509_29562} {RNA1509_29562, RNA815_9089} | |
| 14. | MligTC455_47268 | 41 | 0.85 | Mlig455_050211, Mlig455_066944 | Neo: - Age: - |
0.954 | - | - | - | - | 0.954 | - | Mlig455_050211 {REF} {Length: 731} {RNA1509_14406} {RNA1310_2984.2} {RNA815_4808} Mlig455_066944 {REF} {Length: 4731} {RNA1509_14406} {RNA1310_2984.1} {RNA815_4808} |
|
| 15. | MligTC455_13530 | 655 | 13.64 | Mlig455_010309 | Neo: - Age: logFC(26M/2M)=-0.407 Region-enriched R2: 1.763/0.03276 |
SLC4A10 | 0.953 | - | - | 0.953 | - | - | - | Mlig455_010309 {REF} {Length: 4647} {Pfam: HCO3- transporter family [PF00955.23, score=692.6]; Band 3 cytoplasmic domain [PF07565.15, score=136.2]} {Human: ENSG00000144290, SLC4A10, solute carrier family 4 member 10, [Score=738, Expect=0.0]; ENSG00000033867, SLC4A7, solute carrier family 4 member 7, [Score=730, Expect=0.0]; ENSG00000050438, SLC4A8, solute carrier family 4 member 8, [Score=720, Expect=0.0]; ENSG00000080493, SLC4A4, solute carrier family 4 member 4, [Score=716, Expect=0.0]} {Mouse: ENSMUSG00000026904, Slc4a10, solute carrier family 4, sodium bicarbonate cotransporter-like, member 10, [Score=736, Expect=0.0]; ENSMUSG00000021733, Slc4a7, solute carrier family 4, sodium bicarbonate cotransporter, member 7, [Score=722, Expect=0.0]; ENSMUSG00000023032, Slc4a8, solute carrier family 4 (anion exchanger), member 8, [Score=722, Expect=0.0]; ENSMUSG00000060961, Slc4a4, solute carrier family 4 (anion exchanger), member 4, [Score=720, Expect=0.0]} {Dmel: FBgn0259111, Ndae1, Na[+]-driven anion exchanger 1, [Score=756, Expect=0.0]} {Celegans: WBGene00009920, abts-1, Anion exchange protein, [Score=671, Expect=0.0]} {Smed: dd_Smed_v6_3003_0_2, dd_Smed_v6_3003_0_2, [Score=844, Expect=0.0]} {RNA1509_21736, RNA1509_3893, RNA1509_4226, RNA1509_53087} {RNA1310_2467, RNA1509_21736, RNA1509_3893, RNA1509_4226, RNA1509_53087} {RNA1509_21736, RNA1509_3893, RNA1509_4226, RNA1509_53087, RNA815_1366} |
| 16. | MligTC455_45837 | 631 | 13.15 | Mlig455_055002 | Neo: - Age: - |
0.951 | - | - | 0.951 | - | - | - | Mlig455_055002 {REF} {Length: 821} {RNA1509_3859} {RNA1310_9281} {RNA815_3282} | |
| 17. | MligTC455_16540 | 670 | 13.96 | Mlig455_047920 | Neo: - Age: logFC(26M/2M)=-0.281 |
0.95 | - | - | 0.950 | - | - | - | Mlig455_047920 {REF} {Length: 1171} {RNA1509_47877} {RNA1310_33926.1, RNA1509_47877} {RNA1509_47877, RNA815_27874} | |
| 18. | MligTC455_53091 | 542 | 11.29 | Mlig455_061253 | Neo: - Age: - |
SPATA1 | 0.95 | - | - | 0.950 | - | - | - | Mlig455_061253 {REF} {Length: 3411} {Pfam: Spermatogenesis-associated C-terminus [PF15743.7, score=145.3]} {Human: ENSG00000122432, SPATA1, spermatogenesis associated 1, [Score=108, Expect=2e-24]} {Mouse: ENSMUSG00000028188, Spata1, spermatogenesis associated 1, [Score=110, Expect=4e-25]} {Smed: dd_Smed_v6_15381_0_1, dd_Smed_v6_15381_0_1, [RH, Score=174, Expect=1e-46]} {RNA1509_56521} {RNA1310_8534} {RNA815_3401.1} |
| 19. | MligTC455_53429 | 1127 | 23.49 | Mlig455_030401 | Neo: - Age: - |
0.95 | - | - | 0.950 | - | - | - | Mlig455_030401 {REF} {Length: 1102} {RNA1509_12168, RNA1509_4607} {RNA1310_30647, RNA1509_12168, RNA1509_4607} {RNA1509_12168, RNA1509_4607, RNA815_18460} |
Berezikov Lab - 2020-2021 © ERIBA