TomoSeq data search

Data search

Results for MligTC455_49703

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_49703	948	19.75	Mlig455_012619, Mlig455_066530	Neo: Int S/G2/M Age: -	KCND3	Mlig455_012619 {REF} {Length: 2258} {Pfam: Ion transport protein [PF00520.33, score=130.5]; BTB/POZ domain [PF02214.24, score=83.7]; Shal-type voltage-gated potassium channels, N-terminal [PF11601.10, score=53.8]; Ion channel [PF07885.18, score=51.4]; Domain of unknown function (DUF3399) [PF11879.10, score=38.2]; BTB/POZ domain [PF16017.7, score=28.0]} {Human: ENSG00000171385, KCND3, potassium voltage-gated channel subfamily D member 3, [Score=699, Expect=0.0]; ENSG00000184408, KCND2, potassium voltage-gated channel subfamily D member 2, [Score=684, Expect=0.0]; ENSG00000102057, KCND1, potassium voltage-gated channel subfamily D member 1, [Score=682, Expect=0.0]} {Mouse: ENSMUSG00000040896, Kcnd3, potassium voltage-gated channel, Shal-related family, member 3, [Score=695, Expect=0.0]; ENSMUSG00000009731, Kcnd1, potassium voltage-gated channel, Shal-related family, member 1, [Score=688, Expect=0.0]; ENSMUSG00000060882, Kcnd2, potassium voltage-gated channel, Shal-related family, member 2, [Score=682, Expect=0.0]} {Dmel: FBgn0005564, Shal, Shaker cognate l, [Score=705, Expect=0.0]} {Celegans: WBGene00022240, shl-1, SHaL family of potassium channels, [Score=692, Expect=0.0]} {Smed: dd_Smed_v6_15876_0_1, dd_Smed_v6_15876_0_1, [Score=694, Expect=0.0]} {RNA1509_13822} {RNA1310_11399, RNA1509_13822} {RNA1509_13822, RNA815_3704.1} Mlig455_066530 {REF} {Length: 2494} {TRANSSPLICED} {Pfam: Ion transport protein [PF00520.33, score=129.8]; BTB/POZ domain [PF02214.24, score=83.6]; Shal-type voltage-gated potassium channels, N-terminal [PF11601.10, score=53.7]; Ion channel [PF07885.18, score=50.5]; Domain of unknown function (DUF3399) [PF11879.10, score=37.7]; BTB/POZ domain [PF16017.7, score=28.0]} {Human: ENSG00000171385, KCND3, potassium voltage-gated channel subfamily D member 3, [Score=699, Expect=0.0]; ENSG00000184408, KCND2, potassium voltage-gated channel subfamily D member 2, [Score=687, Expect=0.0]; ENSG00000102057, KCND1, potassium voltage-gated channel subfamily D member 1, [Score=685, Expect=0.0]} {Mouse: ENSMUSG00000040896, Kcnd3, potassium voltage-gated channel, Shal-related family, member 3, [Score=697, Expect=0.0]; ENSMUSG00000009731, Kcnd1, potassium voltage-gated channel, Shal-related family, member 1, [Score=690, Expect=0.0]; ENSMUSG00000060882, Kcnd2, potassium voltage-gated channel, Shal-related family, member 2, [Score=686, Expect=0.0]} {Dmel: FBgn0005564, Shal, Shaker cognate l, [Score=709, Expect=0.0]} {Celegans: WBGene00022240, shl-1, SHaL family of potassium channels, [Score=689, Expect=0.0]} {Smed: dd_Smed_v6_15876_0_1, dd_Smed_v6_15876_0_1, [Score=692, Expect=0.0]} {RNA1509_60079} {RNA1310_11399, RNA1509_60079} {RNA1509_60079, RNA815_3704.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_49703

948

19.75

Mlig455_012619, Mlig455_066530

Neo: Int S/G2/M

Age: -

KCND3

Mlig455_012619 {REF} {Length: 2258} {Pfam: Ion transport protein [PF00520.33, score=130.5]; BTB/POZ domain [PF02214.24, score=83.7]; Shal-type voltage-gated potassium channels, N-terminal [PF11601.10, score=53.8]; Ion channel [PF07885.18, score=51.4]; Domain of unknown function (DUF3399) [PF11879.10, score=38.2]; BTB/POZ domain [PF16017.7, score=28.0]} {Human: ENSG00000171385, KCND3, potassium voltage-gated channel subfamily D member 3, [Score=699, Expect=0.0]; ENSG00000184408, KCND2, potassium voltage-gated channel subfamily D member 2, [Score=684, Expect=0.0]; ENSG00000102057, KCND1, potassium voltage-gated channel subfamily D member 1, [Score=682, Expect=0.0]} {Mouse: ENSMUSG00000040896, Kcnd3, potassium voltage-gated channel, Shal-related family, member 3, [Score=695, Expect=0.0]; ENSMUSG00000009731, Kcnd1, potassium voltage-gated channel, Shal-related family, member 1, [Score=688, Expect=0.0]; ENSMUSG00000060882, Kcnd2, potassium voltage-gated channel, Shal-related family, member 2, [Score=682, Expect=0.0]} {Dmel: FBgn0005564, Shal, Shaker cognate l, [Score=705, Expect=0.0]} {Celegans: WBGene00022240, shl-1, SHaL family of potassium channels, [Score=692, Expect=0.0]} {Smed: dd_Smed_v6_15876_0_1, dd_Smed_v6_15876_0_1, [Score=694, Expect=0.0]} {RNA1509_13822} {RNA1310_11399, RNA1509_13822} {RNA1509_13822, RNA815_3704.1}

Mlig455_066530 {REF} {Length: 2494} {TRANSSPLICED} {Pfam: Ion transport protein [PF00520.33, score=129.8]; BTB/POZ domain [PF02214.24, score=83.6]; Shal-type voltage-gated potassium channels, N-terminal [PF11601.10, score=53.7]; Ion channel [PF07885.18, score=50.5]; Domain of unknown function (DUF3399) [PF11879.10, score=37.7]; BTB/POZ domain [PF16017.7, score=28.0]} {Human: ENSG00000171385, KCND3, potassium voltage-gated channel subfamily D member 3, [Score=699, Expect=0.0]; ENSG00000184408, KCND2, potassium voltage-gated channel subfamily D member 2, [Score=687, Expect=0.0]; ENSG00000102057, KCND1, potassium voltage-gated channel subfamily D member 1, [Score=685, Expect=0.0]} {Mouse: ENSMUSG00000040896, Kcnd3, potassium voltage-gated channel, Shal-related family, member 3, [Score=697, Expect=0.0]; ENSMUSG00000009731, Kcnd1, potassium voltage-gated channel, Shal-related family, member 1, [Score=690, Expect=0.0]; ENSMUSG00000060882, Kcnd2, potassium voltage-gated channel, Shal-related family, member 2, [Score=686, Expect=0.0]} {Dmel: FBgn0005564, Shal, Shaker cognate l, [Score=709, Expect=0.0]} {Celegans: WBGene00022240, shl-1, SHaL family of potassium channels, [Score=689, Expect=0.0]} {Smed: dd_Smed_v6_15876_0_1, dd_Smed_v6_15876_0_1, [Score=692, Expect=0.0]} {RNA1509_60079} {RNA1310_11399, RNA1509_60079} {RNA1509_60079, RNA815_3704.1}

Cumulative graph for MligTC455_49703

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.066	4.601	0.94166	1.00000
RegionR2	0.592	4.601	0.20404	0.56609
RegionR3	-0.284	4.601	0.48319	0.98453
RegionR4	0.562	4.601	0.16761	0.42951
RegionR5	-0.782	4.601	0.03712	0.15105
RegionR6	-0.627	4.601	0.14329	0.67821
RegionR7	0.262	4.601	0.60545	1.00000
RegionR8	0.344	4.601	0.58147	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-0.068	4.601	0.95586	1.00000
RegenerationR2	0.869	4.601	0.02940	0.28202
RegenerationR3	1.201	4.601	0.00879	0.17187
RegenerationR4	0.341	4.601	0.44098	0.83752
RegenerationR5	1.28	4.601	0.00347	0.10484
RegenerationR6	1.665	4.601	0.00038	0.01997
RegenerationBL	0.958	4.601	0.04695	0.24791
RegenerationTP	0.323	4.601	0.55091	0.93352

Genes with expression patterns similar to MligTC455_49703

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_49703	948	19.75	Mlig455_012619, Mlig455_066530	Neo: Int S/G2/M Age: -	KCND3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_012619 {REF} {Length: 2258} {Pfam: Ion transport protein [PF00520.33, score=130.5]; BTB/POZ domain [PF02214.24, score=83.7]; Shal-type voltage-gated potassium channels, N-terminal [PF11601.10, score=53.8]; Ion channel [PF07885.18, score=51.4]; Domain of unknown function (DUF3399) [PF11879.10, score=38.2]; BTB/POZ domain [PF16017.7, score=28.0]} {Human: ENSG00000171385, KCND3, potassium voltage-gated channel subfamily D member 3, [Score=699, Expect=0.0]; ENSG00000184408, KCND2, potassium voltage-gated channel subfamily D member 2, [Score=684, Expect=0.0]; ENSG00000102057, KCND1, potassium voltage-gated channel subfamily D member 1, [Score=682, Expect=0.0]} {Mouse: ENSMUSG00000040896, Kcnd3, potassium voltage-gated channel, Shal-related family, member 3, [Score=695, Expect=0.0]; ENSMUSG00000009731, Kcnd1, potassium voltage-gated channel, Shal-related family, member 1, [Score=688, Expect=0.0]; ENSMUSG00000060882, Kcnd2, potassium voltage-gated channel, Shal-related family, member 2, [Score=682, Expect=0.0]} {Dmel: FBgn0005564, Shal, Shaker cognate l, [Score=705, Expect=0.0]} {Celegans: WBGene00022240, shl-1, SHaL family of potassium channels, [Score=692, Expect=0.0]} {Smed: dd_Smed_v6_15876_0_1, dd_Smed_v6_15876_0_1, [Score=694, Expect=0.0]} {RNA1509_13822} {RNA1310_11399, RNA1509_13822} {RNA1509_13822, RNA815_3704.1} Mlig455_066530 {REF} {Length: 2494} {TRANSSPLICED} {Pfam: Ion transport protein [PF00520.33, score=129.8]; BTB/POZ domain [PF02214.24, score=83.6]; Shal-type voltage-gated potassium channels, N-terminal [PF11601.10, score=53.7]; Ion channel [PF07885.18, score=50.5]; Domain of unknown function (DUF3399) [PF11879.10, score=37.7]; BTB/POZ domain [PF16017.7, score=28.0]} {Human: ENSG00000171385, KCND3, potassium voltage-gated channel subfamily D member 3, [Score=699, Expect=0.0]; ENSG00000184408, KCND2, potassium voltage-gated channel subfamily D member 2, [Score=687, Expect=0.0]; ENSG00000102057, KCND1, potassium voltage-gated channel subfamily D member 1, [Score=685, Expect=0.0]} {Mouse: ENSMUSG00000040896, Kcnd3, potassium voltage-gated channel, Shal-related family, member 3, [Score=697, Expect=0.0]; ENSMUSG00000009731, Kcnd1, potassium voltage-gated channel, Shal-related family, member 1, [Score=690, Expect=0.0]; ENSMUSG00000060882, Kcnd2, potassium voltage-gated channel, Shal-related family, member 2, [Score=686, Expect=0.0]} {Dmel: FBgn0005564, Shal, Shaker cognate l, [Score=709, Expect=0.0]} {Celegans: WBGene00022240, shl-1, SHaL family of potassium channels, [Score=689, Expect=0.0]} {Smed: dd_Smed_v6_15876_0_1, dd_Smed_v6_15876_0_1, [Score=692, Expect=0.0]} {RNA1509_60079} {RNA1310_11399, RNA1509_60079} {RNA1509_60079, RNA815_3704.1}
2.	MligTC455_25367	617	12.86	Mlig455_005998	Neo: - Age: logFC(26M/2M)=-0.397 Region-enriched R5: 1.203/0.01149	PCNX1	0.974	-	-	-	0.974	-	-	Mlig455_005998 {REF} {Length: 7567} {TRANSSPLICED} {Pfam: Pecanex protein (C-terminus) [PF05041.17, score=277.0]} {Human: ENSG00000100731, PCNX1, pecanex 1, [RH, Score=892, Expect=0.0]} {Mouse: ENSMUSG00000021140, Pcnx, pecanex homolog, [RH, Score=903, Expect=0.0]} {Dmel: FBgn0003048, pcx, pecanex, [RH, Score=521, Expect=5e-150]} {Celegans: WBGene00015237, B0511.12, [RH, Score=699, Expect=0.0]} {Smed: dd_Smed_v6_4696_0_1, dd_Smed_v6_4696_0_1, [RH, Score=737, Expect=0.0]} {RNA1509_30867, RNA1509_3296, RNA1509_47476} {RNA1310_315.1, RNA1509_30867, RNA1509_47476} {RNA1509_30867, RNA1509_47476, RNA815_192}
3.	MligTC455_53751	3101	64.6	Mlig455_010021, Mlig455_063258	Neo: - Age: logFC(26M/2M)=0.602 Regeneration-upregulated BL: 1.302 Regeneration-enriched BL: 1.302	VDAC2	0.963	-	-	-	0.963	-	-	Mlig455_010021 {REF} {Length: 1452} {TRANSSPLICED} {Pfam: Eukaryotic porin [PF01459.24, score=181.9]} {Human: ENSG00000165637, VDAC2, voltage dependent anion channel 2, [Score=224, Expect=7e-72]; ENSG00000213585, VDAC1, voltage dependent anion channel 1, [Score=223, Expect=1e-71]} {Mouse: ENSMUSG00000021771, Vdac2, voltage-dependent anion channel 2, [Score=223, Expect=6e-72]; ENSMUSG00000020402, Vdac1, voltage-dependent anion channel 1, [Score=221, Expect=3e-71]} {Dmel: FBgn0004363, porin, [Score=212, Expect=1e-67]} {Celegans: WBGene00019900, vdac-1, Probable voltage-dependent anion-selective channel, [Score=158, Expect=8e-47]} {Smed: dd_Smed_v6_738_0_1, dd_Smed_v6_738_0_1, [Score=155, Expect=1e-45]} {RNA1509_19910, RNA1509_33070} {RNA1310_5610.1, RNA1509_33070} {RNA1509_33070, RNA815_9692} Mlig455_063258 {REF} {Length: 1449} {TRANSSPLICED} {Pfam: Eukaryotic porin [PF01459.24, score=181.9]} {Human: ENSG00000165637, VDAC2, voltage dependent anion channel 2, [Score=224, Expect=7e-72]; ENSG00000213585, VDAC1, voltage dependent anion channel 1, [Score=223, Expect=1e-71]} {Mouse: ENSMUSG00000021771, Vdac2, voltage-dependent anion channel 2, [Score=223, Expect=6e-72]; ENSMUSG00000020402, Vdac1, voltage-dependent anion channel 1, [Score=221, Expect=3e-71]} {Dmel: FBgn0004363, porin, [Score=212, Expect=1e-67]} {Celegans: WBGene00019900, vdac-1, Probable voltage-dependent anion-selective channel, [Score=158, Expect=8e-47]} {Smed: dd_Smed_v6_738_0_1, dd_Smed_v6_738_0_1, [Score=155, Expect=1e-45]} {RNA1509_19910} {RNA1310_5610.1} {RNA815_9692}
4.	MligTC455_48641	2177	45.36	Mlig455_058201	Neo: - Age: logFC(26M/2M)=0.592		0.961	-	-	-	0.961	-	-	Mlig455_058201 {REF} {Length: 1045} {TRANSSPLICED} {RNA1509_11719, RNA1509_1583} {RNA1310_33179, RNA1509_11719} {RNA1509_11719, RNA815_15253}