TomoSeq data search

Data search

Results for MligTC455_49790

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_49790

984

20.51

Mlig455_027726, Mlig455_027922, Mlig455_027932

Neo: -

Age: logFC(26M/2M)=-0.312

LRGUK

Mlig455_027726 {REF} {Length: 2295} {Pfam: Leucine Rich repeats (2 copies) [PF12799.9, score=58.8]; Leucine rich repeat [PF13855.8, score=48.7]; Leucine-rich repeat [PF14580.8, score=40.7]; Leucine Rich repeat [PF13516.8, score=20.3]} {Human: ENSG00000155530, LRGUK, leucine rich repeats and guanylate kinase domain containing, [Score=79.7, Expect=3e-15]} {Mouse: ENSMUSG00000056215, Lrguk, leucine-rich repeats and guanylate kinase domain containing, [Score=84.0, Expect=8e-17]} {Dmel: FBgn0028992, sds22, [Score=68.2, Expect=2e-12]} {Celegans: WBGene00189952, K10D2.8, [Score=81.6, Expect=6e-17]} {Smed: dd_Smed_v6_8299_0_1, dd_Smed_v6_8299_0_1, [Score=62.8, Expect=9e-11]} {RNA1509_20921, RNA1509_32702} {RNA1310_17838.2, RNA1509_20921, RNA1509_32702} {RNA1509_20921, RNA1509_32702, RNA815_6953.1}

Mlig455_027922 {REF} {Length: 1738} {Pfam: Leucine Rich repeats (2 copies) [PF12799.9, score=58.8]; Leucine rich repeat [PF13855.8, score=48.7]; Leucine-rich repeat [PF14580.8, score=40.7]; Leucine Rich repeat [PF13516.8, score=20.3]} {Human: ENSG00000155530, LRGUK, leucine rich repeats and guanylate kinase domain containing, [Score=79.7, Expect=3e-15]} {Mouse: ENSMUSG00000056215, Lrguk, leucine-rich repeats and guanylate kinase domain containing, [Score=84.0, Expect=8e-17]} {Dmel: FBgn0028992, sds22, [Score=68.2, Expect=2e-12]} {Celegans: WBGene00189952, K10D2.8, [Score=81.6, Expect=6e-17]} {Smed: dd_Smed_v6_8299_0_1, dd_Smed_v6_8299_0_1, [Score=62.8, Expect=9e-11]} {RNA1509_20921} {RNA1310_17838.2} {RNA815_6953.1}

Mlig455_027932 {REF} {Length: 1651} {Pfam: Leucine Rich repeats (2 copies) [PF12799.9, score=62.4]; Leucine rich repeat [PF13855.8, score=51.0]; Leucine-rich repeat [PF14580.8, score=42.0]; Leucine Rich repeat [PF13516.8, score=18.6]} {Human: ENSG00000155530, LRGUK, leucine rich repeats and guanylate kinase domain containing, [Score=75.5, Expect=1e-14]} {Mouse: ENSMUSG00000056215, Lrguk, leucine-rich repeats and guanylate kinase domain containing, [Score=80.9, Expect=1e-16]} {Dmel: FBgn0028992, sds22, [Score=68.6, Expect=6e-13]} {Celegans: WBGene00189952, K10D2.8, [Score=82.8, Expect=7e-18]} {Smed: dd_Smed_v6_5405_0_1, dd_Smed_v6_5405_0_1, [Score=63.2, Expect=2e-11]} {RNA1509_32702} {RNA1310_17838.2} {RNA815_6953.1}

Cumulative graph for MligTC455_49790

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.325	4.71	0.35800	1.00000
RegionR2	1.112	4.71	0.06299	0.30305
RegionR3	0.627	4.71	0.19243	0.72998
RegionR4	0.566	4.71	0.31704	0.63334
RegionR5	-0.912	4.71	0.08023	0.26250
RegionR6	0.266	4.71	0.59137	1.00000
RegionR7	0.292	4.71	0.60430	1.00000
RegionR8	-0.625	4.71	0.43235	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-6.135	4.71	0.23392	0.96368
RegenerationR2	0.345	4.71	0.49299	0.86869
RegenerationR3	0.192	4.71	0.73092	0.95816
RegenerationR4	0.183	4.71	0.75159	0.97037
RegenerationR5	0.608	4.71	0.28081	0.70980
RegenerationR6	-0.044	4.71	0.93750	1.00000
RegenerationBL	0.187	4.71	0.77026	1.00000
RegenerationTP	0.94	4.71	0.13908	0.55683

Genes with expression patterns similar to MligTC455_49790

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_49790	984	20.51	Mlig455_027726, Mlig455_027922, Mlig455_027932	Neo: - Age: logFC(26M/2M)=-0.312	LRGUK	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_027726 {REF} {Length: 2295} {Pfam: Leucine Rich repeats (2 copies) [PF12799.9, score=58.8]; Leucine rich repeat [PF13855.8, score=48.7]; Leucine-rich repeat [PF14580.8, score=40.7]; Leucine Rich repeat [PF13516.8, score=20.3]} {Human: ENSG00000155530, LRGUK, leucine rich repeats and guanylate kinase domain containing, [Score=79.7, Expect=3e-15]} {Mouse: ENSMUSG00000056215, Lrguk, leucine-rich repeats and guanylate kinase domain containing, [Score=84.0, Expect=8e-17]} {Dmel: FBgn0028992, sds22, [Score=68.2, Expect=2e-12]} {Celegans: WBGene00189952, K10D2.8, [Score=81.6, Expect=6e-17]} {Smed: dd_Smed_v6_8299_0_1, dd_Smed_v6_8299_0_1, [Score=62.8, Expect=9e-11]} {RNA1509_20921, RNA1509_32702} {RNA1310_17838.2, RNA1509_20921, RNA1509_32702} {RNA1509_20921, RNA1509_32702, RNA815_6953.1} Mlig455_027922 {REF} {Length: 1738} {Pfam: Leucine Rich repeats (2 copies) [PF12799.9, score=58.8]; Leucine rich repeat [PF13855.8, score=48.7]; Leucine-rich repeat [PF14580.8, score=40.7]; Leucine Rich repeat [PF13516.8, score=20.3]} {Human: ENSG00000155530, LRGUK, leucine rich repeats and guanylate kinase domain containing, [Score=79.7, Expect=3e-15]} {Mouse: ENSMUSG00000056215, Lrguk, leucine-rich repeats and guanylate kinase domain containing, [Score=84.0, Expect=8e-17]} {Dmel: FBgn0028992, sds22, [Score=68.2, Expect=2e-12]} {Celegans: WBGene00189952, K10D2.8, [Score=81.6, Expect=6e-17]} {Smed: dd_Smed_v6_8299_0_1, dd_Smed_v6_8299_0_1, [Score=62.8, Expect=9e-11]} {RNA1509_20921} {RNA1310_17838.2} {RNA815_6953.1} Mlig455_027932 {REF} {Length: 1651} {Pfam: Leucine Rich repeats (2 copies) [PF12799.9, score=62.4]; Leucine rich repeat [PF13855.8, score=51.0]; Leucine-rich repeat [PF14580.8, score=42.0]; Leucine Rich repeat [PF13516.8, score=18.6]} {Human: ENSG00000155530, LRGUK, leucine rich repeats and guanylate kinase domain containing, [Score=75.5, Expect=1e-14]} {Mouse: ENSMUSG00000056215, Lrguk, leucine-rich repeats and guanylate kinase domain containing, [Score=80.9, Expect=1e-16]} {Dmel: FBgn0028992, sds22, [Score=68.6, Expect=6e-13]} {Celegans: WBGene00189952, K10D2.8, [Score=82.8, Expect=7e-18]} {Smed: dd_Smed_v6_5405_0_1, dd_Smed_v6_5405_0_1, [Score=63.2, Expect=2e-11]} {RNA1509_32702} {RNA1310_17838.2} {RNA815_6953.1}
2.	MligTC455_15521	331	6.9	Mlig455_020934	Neo: - Age: Down-Down-Up, logFC(26M/2M)=0.550		2.559	-	-	0.750	0.958	0.851	-	Mlig455_020934 {REF} {Length: 2818} {RNA1509_7801} {RNA1310_10439.1} {RNA815_17709.2}
3.	MligTC455_36396	627	13.06	Mlig455_019585, Mlig455_028553, Mlig455_064739	Neo: - Age: Down-Up-Up	UPP1	2.516	-	-	0.710	-	0.853	0.953	Mlig455_019585 {REF} {Length: 207} {NoTransDecoderORF} {RNA1509_11745} {RNA1310_50394} {RNA815_2064.1} Mlig455_028553 {REF} {Length: 1227} {Pfam: Phosphorylase superfamily [PF01048.22, score=98.0]} {Human: ENSG00000183696, UPP1, uridine phosphorylase 1, [RH, Score=265, Expect=2e-87]; ENSG00000007001, UPP2, uridine phosphorylase 2, [RH, Score=256, Expect=4e-84]} {Mouse: ENSMUSG00000020407, Upp1, uridine phosphorylase 1, [RH, Score=269, Expect=3e-89]; ENSMUSG00000026839, Upp2, uridine phosphorylase 2, [RH, Score=260, Expect=9e-86]} {Dmel: FBgn0039464, CG6330, [RH, Score=259, Expect=1e-84]} {Celegans: WBGene00022817, upp-1, Uridine and thymidine phosphorylase, [RH, Score=194, Expect=2e-60]} {Smed: dd_Smed_v6_9107_0_1, dd_Smed_v6_9107_0_1, [RH, Score=199, Expect=1e-62]} {RNA1509_11745} {RNA1310_7741.1} {RNA815_2064.1} Mlig455_064739 {REF} {Length: 1387} {Pfam: Phosphorylase superfamily [PF01048.22, score=95.6]} {Human: ENSG00000183696, UPP1, uridine phosphorylase 1, [RH, Score=268, Expect=1e-88]; ENSG00000007001, UPP2, uridine phosphorylase 2, [RH, Score=263, Expect=1e-86]} {Mouse: ENSMUSG00000020407, Upp1, uridine phosphorylase 1, [RH, Score=273, Expect=8e-91]; ENSMUSG00000026839, Upp2, uridine phosphorylase 2, [RH, Score=265, Expect=2e-87]} {Dmel: FBgn0039464, CG6330, [RH, Score=265, Expect=8e-87]} {Celegans: WBGene00022817, upp-1, Uridine and thymidine phosphorylase, [RH, Score=205, Expect=2e-64]} {Smed: dd_Smed_v6_9107_0_1, dd_Smed_v6_9107_0_1, [RH, Score=201, Expect=4e-63]} {RNA1509_11239} {RNA1310_7897.2} {RNA815_2064.1}
4.	MligTC455_54188	1224	25.51	Mlig455_011257, Mlig455_011337, Mlig455_011343	Neo: - Age: logFC(26M/2M)=-0.405 Region-enriched R2: 1.704/0.00045	TRPM3	2.503	-	-	0.951	-	0.770	0.782	Mlig455_011257 {REF} {Length: 4016} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=57.4]; Ankyrin repeats (many copies) [PF13637.8, score=35.7]; Ankyrin repeat [PF13606.8, score=29.0]; Ankyrin repeats (many copies) [PF13857.8, score=19.6]} {RNA1509_6328} {RNA1310_1706} {RNA815_498} Mlig455_011337 {REF} {Length: 4535} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=67.0]; Ankyrin repeats (many copies) [PF13637.8, score=42.0]; Ankyrin repeats (many copies) [PF13857.8, score=34.0]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=85.5, Expect=5e-16]; ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=83.6, Expect=2e-15]; ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=83.6, Expect=2e-15]; ENSG00000092439, TRPM7, transient receptor potential cation channel subfamily M member 7, [Score=81.3, Expect=1e-14]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=87.0, Expect=1e-16]; ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=86.3, Expect=2e-16]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=77.0, Expect=1e-13]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=68.9, Expect=2e-11]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [Score=102, Expect=6e-22]} {RNA1509_6328} {RNA1310_1706, RNA1509_6328} {RNA1509_6328, RNA815_498} Mlig455_011343 {REF} {Length: 5711} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=61.4]; Ankyrin repeats (many copies) [PF13637.8, score=46.8]; Ankyrin repeat [PF00023.32, score=23.9]; Ankyrin repeat [PF13606.8, score=20.5]; Ankyrin repeats (many copies) [PF13857.8, score=20.1]} {RNA1509_6328} {RNA1310_1706} {RNA815_498}
5.	MligTC455_47536	707	14.74	Mlig455_030587	Neo: - Age: -	LRRD1	2.438	-	-	0.951	0.706	0.781	-	Mlig455_030587 {REF} {Length: 3720} {Pfam: Leucine rich repeat [PF13855.8, score=106.7]; Leucine Rich repeats (2 copies) [PF12799.9, score=81.9]; Leucine Rich Repeat [PF00560.35, score=36.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=22.0]; Ras family [PF00071.24, score=19.5]; Leucine Rich repeat [PF13516.8, score=19.2]} {Human: ENSG00000240720, LRRD1, leucine rich repeats and death domain containing 1, [Score=132, Expect=8e-31]} {Mouse: ENSMUSG00000070056, Mfhas1, malignant fibrous histiocytoma amplified sequence 1, [RH, Score=125, Expect=7e-29]} {Dmel: FBgn0038504, Sur-8, [Score=135, Expect=3e-32]} {Celegans: WBGene00002632, let-413, [Score=114, Expect=8e-26]} {Smed: dd_Smed_v6_11334_0_1, dd_Smed_v6_11334_0_1, [RH, Score=378, Expect=2e-115]} {RNA1509_10696, RNA1509_26722} {RNA1310_4666.1, RNA1509_10696, RNA1509_26722} {RNA1509_10696, RNA1509_26722, RNA815_3011}
6.	MligTC455_38447	1215	25.32	Mlig455_064649	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.231		1.735	-	-	-	0.778	-	0.957	Mlig455_064649 {REF} {Length: 2160} {TRANSSPLICED} {Pfam: PH domain [PF00169.31, score=27.3]} {Dmel: FBgn0263353, CG11000, [Score=61.6, Expect=2e-10]} {Celegans: WBGene00009534, F38B7.3, [Score=69.3, Expect=9e-13]} {Smed: dd_Smed_v6_4018_0_1, dd_Smed_v6_4018_0_1, [Score=100, Expect=9e-24]} {RNA1509_10365} {RNA1310_20310} {RNA815_26365}
7.	MligTC455_51384	557	11.61	Mlig455_025859, Mlig455_025921, Mlig455_025953	Neo: - Age: logFC(26M/2M)=-0.224		1.73	-	-	0.964	-	0.766	-	Mlig455_025859 {REF} {Length: 3521} {Pfam: Dynamin family [PF00350.25, score=44.1]; 50S ribosome-binding GTPase [PF01926.25, score=38.9]; Elongation factor Tu GTP binding domain [PF00009.29, score=28.5]; ATPase domain predominantly from Archaea [PF01637.20, score=21.4]; RsgA GTPase [PF03193.18, score=19.5]} {Smed: dd_Smed_v6_6544_0_1, dd_Smed_v6_6544_0_1, [Score=69.3, Expect=9e-12]} {RNA1509_11576} {RNA1310_3511} {RNA815_1113} Mlig455_025921 {REF} {Length: 3198} {Pfam: Dynamin family [PF00350.25, score=44.4]; 50S ribosome-binding GTPase [PF01926.25, score=39.1]; Elongation factor Tu GTP binding domain [PF00009.29, score=28.7]; ATPase domain predominantly from Archaea [PF01637.20, score=21.5]; RsgA GTPase [PF03193.18, score=19.9]} {Smed: dd_Smed_v6_6544_0_1, dd_Smed_v6_6544_0_1, [Score=68.9, Expect=8e-12]} {RNA1509_58217, RNA1509_59966} {RNA1310_3511, RNA1509_59966} {RNA1509_59966, RNA815_1113} Mlig455_025953 {REF} {Length: 3561} {Pfam: Dynamin family [PF00350.25, score=44.1]; 50S ribosome-binding GTPase [PF01926.25, score=39.0]; Elongation factor Tu GTP binding domain [PF00009.29, score=29.0]; RsgA GTPase [PF03193.18, score=20.4]; ATPase domain predominantly from Archaea [PF01637.20, score=19.8]} {Smed: dd_Smed_v6_6544_0_1, dd_Smed_v6_6544_0_1, [Score=69.3, Expect=9e-12]} {RNA1509_11576, RNA1509_43753} {RNA1310_3511, RNA1509_43753} {RNA1509_43753, RNA815_1113}
8.	MligTC455_08478	59	1.22	Mlig455_009785	Neo: - Age: -		0.956	-	-	-	-	0.956	-	Mlig455_009785 {REF} {Length: 348} {NoTransDecoderORF}
9.	MligTC455_19469	1933	40.28	Mlig455_033867	Neo: - Age: Down-Up-Down	GLRX	0.951	-	-	-	-	-	0.951	Mlig455_033867 {REF} {Length: 644} {TRANSSPLICED} {Pfam: Glutaredoxin [PF00462.26, score=31.4]} {Human: ENSG00000173221, GLRX, glutaredoxin, [Score=57.0, Expect=2e-11]} {Mouse: ENSMUSG00000021591, Glrx, glutaredoxin, [RH, Score=58.2, Expect=7e-12]} {Dmel: FBgn0036820, Grx1, Glutaredoxin 1, [Score=53.9, Expect=3e-10]} {Celegans: WBGene00021331, glrx-10, GLutaRedoXin, [Score=66.6, Expect=2e-15]} {Smed: dd_Smed_v6_4565_0_1, dd_Smed_v6_4565_0_1, [RH, Score=83.2, Expect=5e-22]} {RNA1509_44650} {RNA1310_53861.1, RNA1509_44650} {RNA1509_44650, RNA815_27537}

Berezikov Lab - 2020-2021 © ERIBA