M. lignano Tomo-Seq
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Results for MligTC455_49792

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_49792 72 1.51 Mlig455_024974

Neo: -

Age: -

 DAP3 Mlig455_024974 {REF} {Length: 1894} {Pfam: Mitochondrial ribosomal death-associated protein 3 [PF10236.11, score=152.6]} {Human: ENSG00000132676, DAP3, death associated protein 3, [RH, Score=222, Expect=3e-68]} {Mouse: ENSMUSG00000068921, Dap3, death associated protein 3, [RH, Score=223, Expect=7e-69]} {Dmel: FBgn0034727, mRpS29, mitochondrial ribosomal protein S29, [RH, Score=177, Expect=2e-51]} {Celegans: WBGene00000933, dap-3, Mammalian cell Death Associated Protein related; Putative uncharacterized protein, [RH, Score=127, Expect=8e-33]} {Smed: dd_Smed_v6_3336_0_1, dd_Smed_v6_3336_0_1, [RH, Score=178, Expect=3e-52]} {RNA1509_30218, RNA1509_45582} {RNA1310_12179, RNA1509_45582} {RNA1509_45582, RNA815_10991}

Cumulative graph for MligTC455_49792

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.733 1.735 0.35945 1.00000
RegionR2 2.271 1.735 0.08072 0.34825
RegionR3 1.457 1.735 0.12306 0.60556
RegionR4 -0.899 1.735 0.98680 1.00000
RegionR5 0.584 1.735 0.58137 0.93991
RegionR6 0.298 1.735 0.75012 1.00000
RegionR7 0.101 1.735 0.84457 1.00000
RegionR8 0.921 1.735 0.57799 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 3.406 1.735 0.99973 1.00000
RegenerationR2 0.31 1.735 0.70986 0.95979
RegenerationR3 1.02 1.735 0.25893 0.69324
RegenerationR4 2.563 1.735 0.01973 0.22075
RegenerationR5 1.316 1.735 0.09482 0.47163
RegenerationR6 2.746 1.735 0.00675 0.10028
RegenerationBL 1.803 1.735 0.30970 0.67505
RegenerationTP 1.777 1.735 0.20972 0.65189


Genes with expression patterns similar to MligTC455_49792

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_49792 72 1.51 Mlig455_024974

Neo: -

Age: -

 DAP3 5 1.000 1.000 - 1.000 1.000 1.000 Mlig455_024974 {REF} {Length: 1894} {Pfam: Mitochondrial ribosomal death-associated protein 3 [PF10236.11, score=152.6]} {Human: ENSG00000132676, DAP3, death associated protein 3, [RH, Score=222, Expect=3e-68]} {Mouse: ENSMUSG00000068921, Dap3, death associated protein 3, [RH, Score=223, Expect=7e-69]} {Dmel: FBgn0034727, mRpS29, mitochondrial ribosomal protein S29, [RH, Score=177, Expect=2e-51]} {Celegans: WBGene00000933, dap-3, Mammalian cell Death Associated Protein related; Putative uncharacterized protein, [RH, Score=127, Expect=8e-33]} {Smed: dd_Smed_v6_3336_0_1, dd_Smed_v6_3336_0_1, [RH, Score=178, Expect=3e-52]} {RNA1509_30218, RNA1509_45582} {RNA1310_12179, RNA1509_45582} {RNA1509_45582, RNA815_10991}
2. MligTC455_40634 447 9.31 Mlig455_057510

Neo: -

Age: -

 OMA1 0.961 - - - - - 0.961 Mlig455_057510 {REF} {Length: 2049} {TRANSSPLICED} {Pfam: Peptidase family M48 [PF01435.20, score=96.6]} {Human: ENSG00000162600, OMA1, OMA1 zinc metallopeptidase, [RH, Score=164, Expect=3e-45]} {Mouse: ENSMUSG00000035069, Oma1, OMA1 zinc metallopeptidase, [RH, Score=163, Expect=6e-45]} {Smed: dd_Smed_v6_5459_0_2, dd_Smed_v6_5459_0_2, [RH, Score=198, Expect=9e-60]} {RNA1509_13537, RNA1509_33185, RNA1509_50835} {RNA1310_22902.1, RNA1509_13537, RNA1509_33185, RNA1509_50835} {RNA1509_13537, RNA1509_33185, RNA1509_50835, RNA815_6482.1}
3. MligTC455_46159 1471 30.64 Mlig455_047468

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=1.700

Region-enriched R4: 1.770/0.00003

 EHD1 0.952 - - - - 0.952 - Mlig455_047468 {REF} {Length: 3382} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF5600) [PF18150.3, score=143.5]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=62.1]; N-terminal EH-domain containing protein [PF16880.7, score=58.8]; Dynamin family [PF00350.25, score=54.3]; 50S ribosome-binding GTPase [PF01926.25, score=34.5]; Elongation factor Tu GTP binding domain [PF00009.29, score=21.5]; EF hand [PF00036.34, score=20.0]} {Human: ENSG00000110047, EHD1, EH domain containing 1, [RH, Score=709, Expect=0.0]; ENSG00000013016, EHD3, EH domain containing 3, [RH, Score=704, Expect=0.0]; ENSG00000103966, EHD4, EH domain containing 4, [RH, Score=693, Expect=0.0]} {Mouse: ENSMUSG00000024772, Ehd1, EH-domain containing 1, [RH, Score=711, Expect=0.0]; ENSMUSG00000107039, Ehd1, EH-domain containing 1, [RH, Score=711, Expect=0.0]; ENSMUSG00000024065, Ehd3, EH-domain containing 3, [RH, Score=698, Expect=0.0]; ENSMUSG00000027293, Ehd4, EH-domain containing 4, [RH, Score=690, Expect=0.0]} {Dmel: FBgn0016693, Past1, Putative Achaete Scute Target 1, [RH, Score=736, Expect=0.0]} {Celegans: WBGene00004373, rme-1, Receptor Mediated Endocytosis; Receptor-mediated endocytosis 1 isoform I, [RH, Score=729, Expect=0.0]} {Smed: dd_Smed_v6_3148_0_1, dd_Smed_v6_3148_0_1, [RH, Score=741, Expect=0.0]} {RNA1509_2034} {RNA1310_6511.3} {RNA815_5849.2}
4. MligTC455_32936 30 0.62 Mlig455_039580, Mlig455_039594, Mlig455_051389

Neo: -

Age: -

 USP15, USP4 0.95 - - - - 0.950 -

Mlig455_039580 {REF} {Length: 2879} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=59.9]} {Human: ENSG00000114316, USP4, ubiquitin specific peptidase 4, [Score=125, Expect=5e-32]} {Mouse: ENSMUSG00000032612, Usp4, ubiquitin specific peptidase 4 (proto-oncogene), [Score=122, Expect=3e-31]} {Dmel: FBgn0038862, Usp8, Ubiquitin specific protease 8, [Score=63.9, Expect=2e-11]} {Celegans: WBGene00019259, H34C03.2, Ubiquitin carboxyl-terminal hydrolase, [Score=83.6, Expect=4e-18]} {Smed: dd_Smed_v6_2284_0_1, dd_Smed_v6_2284_0_1, [Score=110, Expect=2e-27]} {RNA1509_52618} {RNA1310_5829.2} {RNA815_1764.1}

Mlig455_039594 {REF} {Length: 2876} {TRANSSPLICED} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=170.8]; DUSP domain [PF06337.14, score=62.3]; Ubiquitin-like domain [PF14836.8, score=47.6]; Ubiquitin-specific protease C-terminal [PF14533.8, score=27.1]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=20.5]} {Human: ENSG00000135655, USP15, ubiquitin specific peptidase 15, [Score=551, Expect=0.0]; ENSG00000114316, USP4, ubiquitin specific peptidase 4, [Score=530, Expect=5e-177]} {Mouse: ENSMUSG00000032612, Usp4, ubiquitin specific peptidase 4 (proto-oncogene), [RH, Score=534, Expect=0.0]} {Dmel: FBgn0036913, Usp32, Ubiquitin specific protease 32, [Score=245, Expect=2e-68]} {Celegans: WBGene00019259, H34C03.2, Ubiquitin carboxyl-terminal hydrolase, [Score=269, Expect=2e-78]} {Smed: dd_Smed_v6_2284_0_1, dd_Smed_v6_2284_0_1, [Score=327, Expect=4e-100]} {RNA1509_1935, RNA1509_25487} {RNA1310_5829.1, RNA1509_1935, RNA1509_25487} {RNA1509_1935, RNA1509_25487, RNA815_1764.1}

Mlig455_051389 {REF} {Length: 3870} {TRANSSPLICED} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=280.2]; DUSP domain [PF06337.14, score=61.6]; Ubiquitin-like domain [PF14836.8, score=47.0]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=35.6]; Ubiquitin-specific protease C-terminal [PF14533.8, score=24.9]} {Human: ENSG00000114316, USP4, ubiquitin specific peptidase 4, [RH, Score=709, Expect=0.0]; ENSG00000135655, USP15, ubiquitin specific peptidase 15, [RH, Score=703, Expect=0.0]} {Mouse: ENSMUSG00000032612, Usp4, ubiquitin specific peptidase 4 (proto-oncogene), [RH, Score=709, Expect=0.0]; ENSMUSG00000020124, Usp15, ubiquitin specific peptidase 15, [RH, Score=704, Expect=0.0]} {Dmel: FBgn0036913, Usp32, Ubiquitin specific protease 32, [Score=245, Expect=6e-67]} {Celegans: WBGene00019259, H34C03.2, Ubiquitin carboxyl-terminal hydrolase, [RH, Score=388, Expect=3e-120]} {Smed: dd_Smed_v6_2284_0_1, dd_Smed_v6_2284_0_1, [RH, Score=473, Expect=9e-153]} {RNA1509_1935, RNA1509_26744, RNA1509_45920, RNA1509_52618, RNA1509_5939} {RNA1310_5829.1, RNA1509_26744, RNA1509_45920, RNA1509_52618, RNA1509_5939} {RNA1509_26744, RNA1509_45920, RNA1509_52618, RNA1509_5939, RNA815_1764.1}

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