M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_49858

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_49858 411 8.56 Mlig455_037429

Neo: -

Age: -

 CDC42 Mlig455_037429 {REF} {Length: 2600} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=183.8]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=67.9]; ADP-ribosylation factor family [PF00025.23, score=27.0]} {Human: ENSG00000070831, CDC42, cell division cycle 42, [RH, Score=337, Expect=2e-119]; ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [RH, Score=337, Expect=2e-119]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [RH, Score=337, Expect=1e-119]} {Dmel: FBgn0010341, Cdc42, [RH, Score=335, Expect=4e-119]} {Celegans: WBGene00000390, cdc-42, Cell division control protein 42 homolog, [RH, Score=328, Expect=2e-116]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [RH, Score=330, Expect=5e-117]} {RNA1509_55232} {RNA1310_42394} {RNA815_18622}

Cumulative graph for MligTC455_49858

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.862 3.516 0.55197 1.00000
RegionR2 0.843 3.516 0.10790 0.40525
RegionR3 0.136 3.516 0.73969 1.00000
RegionR4 -0.709 3.516 0.19860 0.47765
RegionR5 -0.706 3.516 0.09579 0.29659
RegionR6 0.135 3.516 0.74221 1.00000
RegionR7 0.196 3.516 0.72367 1.00000
RegionR8 0.967 3.516 0.10561 0.60609

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.058 3.516 0.36504 1.00000
RegenerationR2 -0.159 3.516 0.68844 0.95205
RegenerationR3 -0.017 3.516 0.97334 1.00000
RegenerationR4 0.007 3.516 0.99237 1.00000
RegenerationR5 -0.169 3.516 0.71861 0.95891
RegenerationR6 -0.878 3.516 0.09792 0.38921
RegenerationBL -0.572 3.516 0.38212 0.75058
RegenerationTP 0.132 3.516 0.81764 1.00000


Genes with expression patterns similar to MligTC455_49858

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_49858 411 8.56 Mlig455_037429

Neo: -

Age: -

 CDC42 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_037429 {REF} {Length: 2600} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=183.8]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=67.9]; ADP-ribosylation factor family [PF00025.23, score=27.0]} {Human: ENSG00000070831, CDC42, cell division cycle 42, [RH, Score=337, Expect=2e-119]; ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [RH, Score=337, Expect=2e-119]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [RH, Score=337, Expect=1e-119]} {Dmel: FBgn0010341, Cdc42, [RH, Score=335, Expect=4e-119]} {Celegans: WBGene00000390, cdc-42, Cell division control protein 42 homolog, [RH, Score=328, Expect=2e-116]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [RH, Score=330, Expect=5e-117]} {RNA1509_55232} {RNA1310_42394} {RNA815_18622}
2. MligTC455_36647 786 16.38 Mlig455_017686, Mlig455_053756

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.309

Region-enriched R4: 2.139/0.02125

 NWD1, NWD2 2.473 0.773 - 0.953 0.747 - -

Mlig455_017686 {REF} {Length: 5971} {Pfam: AAA domain [PF13401.8, score=21.4]; AAA ATPase domain [PF13191.8, score=19.6]} {Human: ENSG00000174145, NWD2, NACHT and WD repeat domain containing 2, [Score=61.2, Expect=2e-08]} {Mouse: ENSMUSG00000048148, Nwd1, NACHT and WD repeat domain containing 1, [Score=58.2, Expect=1e-07]; ENSMUSG00000090061, Nwd2, NACHT and WD repeat domain containing 2, [Score=57.0, Expect=3e-07]} {Dmel: FBgn0038397, CG10185, [Score=54.7, Expect=1e-06]} {RNA1509_31906} {RNA1310_765} {RNA815_1377}

Mlig455_053756 {REF} {Length: 5627} {TRANSSPLICED} {Pfam: AAA domain [PF13401.8, score=21.3]; AAA ATPase domain [PF13191.8, score=19.2]} {Human: ENSG00000188039, NWD1, NACHT and WD repeat domain containing 1, [Score=63.5, Expect=4e-09]; ENSG00000174145, NWD2, NACHT and WD repeat domain containing 2, [Score=60.5, Expect=3e-08]} {Mouse: ENSMUSG00000048148, Nwd1, NACHT and WD repeat domain containing 1, [Score=59.3, Expect=5e-08]} {RNA1509_23443} {RNA1310_765} {RNA815_1377}
3. MligTC455_42054 347 7.23 Mlig455_016754

Neo: -

Age: -

Region-enriched R8: 2.150/0.03580

 1.747 0.794 - - - - 0.953 Mlig455_016754 {REF} {Length: 394} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_40364} {RNA1310_120150, RNA1509_40364} {RNA1509_40364, RNA815_56219}
4. MligTC455_42086 119 2.49 Mlig455_058136

Neo: -

Age: -

 KIRREL1 1.744 - - - - 0.791 0.953 Mlig455_058136 {REF} {Length: 3771} {Pfam: Immunoglobulin domain [PF13927.8, score=111.3]; Immunoglobulin I-set domain [PF07679.18, score=85.2]; Immunoglobulin domain [PF13895.8, score=71.5]; Immunoglobulin domain [PF00047.27, score=67.3]; Immunoglobulin V-set domain [PF07686.19, score=39.2]; CD80-like C2-set immunoglobulin domain [PF08205.14, score=25.9]} {Human: ENSG00000183853, KIRREL1, kirre like nephrin family adhesion molecule 1, [RH, Score=120, Expect=4e-27]; ENSG00000149571, KIRREL3, kirre like nephrin family adhesion molecule 3, [RH, Score=116, Expect=6e-26]} {Mouse: ENSMUSG00000041734, Kirrel, kirre like nephrin family adhesion molecule 1, [RH, Score=119, Expect=6e-27]; ENSMUSG00000032036, Kirrel3, kirre like nephrin family adhesion molecule 3, [RH, Score=118, Expect=1e-26]} {Dmel: FBgn0085420, DIP-delta, Dpr-interacting protein delta, [Score=60.1, Expect=7e-09]} {Celegans: WBGene00006365, syg-1, Synaptogenesis protein syg-1, [RH, Score=98.6, Expect=8e-21]} {Smed: dd_Smed_v6_12118_0_1, dd_Smed_v6_12118_0_1, [RH, Score=227, Expect=6e-62]} {RNA1509_42885} {RNA1310_3333} {RNA815_3466}
5. MligTC455_15611 451 9.39 Mlig455_060587, Mlig455_060628

Neo: -

Age: -

Regeneration-downregulated BL: -7.473

Regeneration-depleted BL: -7.473

 1.699 0.732 - - - - 0.967

Mlig455_060587 {REF} {Length: 2766} {Pfam: Protein of unknown function (DUF3847) [PF12958.9, score=27.6]} {RNA1509_45592} {RNA1310_33388} {RNA815_14613}

Mlig455_060628 {REF} {Length: 1029} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_59624} {RNA1310_33388} {RNA815_14613}
6. MligTC455_30537 385 8.01 Mlig455_016651

Neo: -

Age: -

 1.686 - - 0.951 - - 0.735 Mlig455_016651 {REF} {Length: 1488} {NoTransDecoderORF} {RNA1509_3314} {RNA1310_528.1} {RNA815_15114}
7. MligTC455_52093 200 4.17 Mlig455_026940, Mlig455_027028, Mlig455_027091

Neo: -

Age: -

 1.68 - - 0.721 - - 0.959

Mlig455_026940 {REF} {Length: 2010} {RNA1310_29141} {RNA815_58200}

Mlig455_027028 {REF} {Length: 1107} {NoTransDecoderORF} {RNA1310_29141} {RNA815_58200}

Mlig455_027091 {REF} {Length: 1224} {RNA1310_29141} {RNA815_58200}
8. MligTC455_15610 221 4.6 Mlig455_053951

Neo: -

Age: logFC(26M/2M)=0.556

 GOLT1A 1.675 0.716 - - - - 0.959 Mlig455_053951 {REF} {Length: 1127} {Pfam: Got1/Sft2-like family [PF04178.14, score=58.1]} {Human: ENSG00000174567, GOLT1A, golgi transport 1A, [RH, Score=119, Expect=3e-35]} {Mouse: ENSMUSG00000103421, Golt1a, golgi transport 1A, [RH, Score=125, Expect=1e-37]; ENSMUSG00000098306, Gm28040, predicted gene, 28040, [RH, Score=125, Expect=1e-37]} {Dmel: FBgn0052576, CG32576, [RH, Score=132, Expect=2e-40]} {Celegans: WBGene00018270, F41C3.4, Probable Golgi transport protein 1, [RH, Score=114, Expect=2e-33]} {Smed: dd_Smed_v6_5105_0_1, dd_Smed_v6_5105_0_1, [RH, Score=139, Expect=2e-43]} {RNA1509_27476} {RNA1310_33388} {RNA815_14613}
9. MligTC455_21779 274 5.71 Mlig455_027616

Neo: -

Age: Down-Up-Up

 0.962 - - - - - 0.962 Mlig455_027616 {REF} {Length: 1003} {Pfam: WSC domain [PF01822.21, score=44.2]; PAN domain [PF00024.28, score=18.6]} {RNA1310_34968.1} {RNA815_9084.1}
10. MligTC455_26259 76 1.59 Mlig455_026466

Neo: -

Age: -

 SSUH2 0.953 - - - - - 0.953 Mlig455_026466 {REF} {Length: 2558} {Human: ENSG00000125046, SSUH2, ssu-2 homolog (C. elegans), [Score=211, Expect=9e-64]} {Mouse: ENSMUSG00000034387, Ssu2, ssu-2 homolog (C. elegans), [Score=168, Expect=6e-48]} {Celegans: WBGene00013455, ssu-2, Suppressor of Stomatin mutant Uncoordination, [Score=67.8, Expect=3e-12]} {RNA1509_35931} {RNA1310_33249} {RNA815_15534}
11. MligTC455_26844 103 2.16 Mlig455_015617, Mlig455_069803

Neo: -

Age: -

 0.953 - - - - - 0.953

Mlig455_015617 {REF} {Length: 1071} {Celegans: WBGene00019136, F59H6.5, [Score=90.9, Expect=1e-19]} {RNA1509_13878} {RNA1310_8770} {RNA815_4829.1}

Mlig455_069803 {REF} {Length: 6022} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=176.0]} {Celegans: WBGene00022692, ZK250.9, [Score=281, Expect=9e-82]} {RNA1509_18422} {RNA1310_8770, RNA1509_18422} {RNA1509_18422, RNA815_4829.1}
12. MligTC455_30093 165 3.43 Mlig455_006983

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.588

 0.953 - - - - - 0.953 Mlig455_006983 {REF} {Length: 1958} {Pfam: Rel homology DNA-binding domain [PF00554.24, score=60.6]; Uncharacterised protein family (UPF0172) [PF03665.15, score=18.8]} {RNA1509_55534} {RNA1310_1280.1} {RNA815_6392}
13. MligTC455_23908 319 6.64 Mlig455_035672, Mlig455_035768

Neo: -

Age: -

Region-enriched R8: 3.529/0.00166

 SDCBP 0.952 - - - - - 0.952

Mlig455_035672 {REF} {Length: 2598} {Pfam: PDZ domain [PF00595.26, score=78.0]; PDZ domain [PF17820.3, score=57.4]; PDZ domain [PF13180.8, score=42.0]} {Human: ENSG00000137575, SDCBP, syndecan binding protein, [Score=57.0, Expect=2e-08]} {Mouse: ENSMUSG00000030838, Ush1c, USH1 protein network component harmonin, [Score=59.3, Expect=8e-09]; ENSMUSG00000028249, Sdcbp, syndecan binding protein, [Score=58.2, Expect=2e-09]} {Dmel: FBgn0029835, CG5921, [Score=67.4, Expect=2e-11]} {Smed: dd_Smed_v6_11951_0_1, dd_Smed_v6_11951_0_1, [RH, Score=188, Expect=2e-54]} {RNA1509_47757} {RNA1310_7845.1} {RNA815_33452}

Mlig455_035768 {REF} {Length: 2416} {Pfam: PDZ domain [PF00595.26, score=75.7]; PDZ domain [PF17820.3, score=57.2]; PDZ domain [PF13180.8, score=43.7]} {Human: ENSG00000137575, SDCBP, syndecan binding protein, [Score=56.2, Expect=5e-08]} {Mouse: ENSMUSG00000030838, Ush1c, USH1 protein network component harmonin, [Score=62.0, Expect=1e-09]} {Dmel: FBgn0029835, CG5921, [Score=64.7, Expect=1e-10]} {Smed: dd_Smed_v6_11951_0_1, dd_Smed_v6_11951_0_1, [RH, Score=188, Expect=6e-54]} {RNA1509_47757} {RNA1310_7845.1} {RNA815_33452}
14. MligTC455_21233 100 2.08 Mlig455_003686

Neo: -

Age: -

 RP1 0.951 - - 0.951 - - - Mlig455_003686 {REF} {Length: 9772} {TRANSSPLICED} {Pfam: PLAT/LH2 domain [PF01477.25, score=240.9]} {Human: ENSG00000104237, RP1, RP1, axonemal microtubule associated, [Score=467, Expect=7e-139]} {Mouse: ENSMUSG00000025900, Rp1, retinitis pigmentosa 1 (human), [Score=434, Expect=7e-126]} {Dmel: FBgn0035229, pns, pinstripe, [Score=61.2, Expect=2e-08]} {Smed: dd_Smed_v6_10315_0_2, dd_Smed_v6_10315_0_2, [Score=585, Expect=8e-179]} {RNA1509_11896} {RNA1310_1638} {RNA815_162}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA