M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_49899

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_49899 208 4.34 Mlig455_018365

Neo: -

Age: -

 MMEL1 Mlig455_018365 {REF} {Length: 2870} {Pfam: Peptidase family M13 [PF01431.23, score=130.5]; Peptidase family M13 [PF05649.15, score=70.0]} {Human: ENSG00000277131, MMEL1, membrane metalloendopeptidase like 1, [Score=144, Expect=4e-35]; ENSG00000142606, MMEL1, membrane metalloendopeptidase like 1, [Score=144, Expect=4e-35]} {Mouse: ENSMUSG00000058183, Mmel1, membrane metallo-endopeptidase-like 1, [Score=155, Expect=5e-39]} {Dmel: FBgn0027570, Nep2, Neprilysin 2, [Score=135, Expect=9e-33]} {Celegans: WBGene00020230, nep-2, Neprilysin-2, [Score=138, Expect=1e-33]} {Smed: dd_Smed_v6_2163_0_1, dd_Smed_v6_2163_0_1, [Score=114, Expect=4e-26]} {RNA1509_38586} {RNA1310_6138, RNA1509_38586} {RNA1509_38586, RNA815_7442}

Cumulative graph for MligTC455_49899

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 3.202 2.619 0.04111 0.49176
RegionR2 0.74 2.619 0.38063 0.77557
RegionR3 0.418 2.619 0.54677 1.00000
RegionR4 0.168 2.619 0.72296 1.00000
RegionR5 -0.087 2.619 0.82652 1.00000
RegionR6 0.634 2.619 0.40333 0.97410
RegionR7 -0.193 2.619 0.87283 1.00000
RegionR8 -4.882 2.619 0.11966 0.63725

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -8.295 2.619 0.03202 0.63420
RegenerationR2 -0.773 2.619 0.10950 0.51776
RegenerationR3 -0.322 2.619 0.59093 0.90383
RegenerationR4 -0.046 2.619 0.96576 1.00000
RegenerationR5 0.628 2.619 0.26382 0.69539
RegenerationR6 -0.024 2.619 0.95962 1.00000
RegenerationBL 2.074 2.619 0.11033 0.39206
RegenerationTP 2.113 2.619 0.29498 0.74051


Genes with expression patterns similar to MligTC455_49899

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_49899 208 4.34 Mlig455_018365

Neo: -

Age: -

 MMEL1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_018365 {REF} {Length: 2870} {Pfam: Peptidase family M13 [PF01431.23, score=130.5]; Peptidase family M13 [PF05649.15, score=70.0]} {Human: ENSG00000277131, MMEL1, membrane metalloendopeptidase like 1, [Score=144, Expect=4e-35]; ENSG00000142606, MMEL1, membrane metalloendopeptidase like 1, [Score=144, Expect=4e-35]} {Mouse: ENSMUSG00000058183, Mmel1, membrane metallo-endopeptidase-like 1, [Score=155, Expect=5e-39]} {Dmel: FBgn0027570, Nep2, Neprilysin 2, [Score=135, Expect=9e-33]} {Celegans: WBGene00020230, nep-2, Neprilysin-2, [Score=138, Expect=1e-33]} {Smed: dd_Smed_v6_2163_0_1, dd_Smed_v6_2163_0_1, [Score=114, Expect=4e-26]} {RNA1509_38586} {RNA1310_6138, RNA1509_38586} {RNA1509_38586, RNA815_7442}
2. MligTC455_52923 144 2.99 Mlig455_039520, Mlig455_051311

Neo: -

Age: -

 1.756 - - 0.957 - 0.799 -

Mlig455_039520 {REF} {Length: 1240} {RNA1509_39289} {RNA1310_98847} {RNA815_64330}

Mlig455_051311 {REF} {Length: 457} {NoTransDecoderORF} {RNA1310_93796} {RNA815_64330}
3. MligTC455_33138 411 8.55 Mlig455_066388

Neo: -

Age: Down-Up-Down

 1.726 - - 0.968 0.758 - - Mlig455_066388 {REF} {Length: 2423} {RNA1509_29764} {RNA1310_1953.1} {RNA815_1322}
4. MligTC455_47516 135 2.81 Mlig455_029995

Neo: -

Age: -

 1.663 - - 0.960 0.703 - - Mlig455_029995 {REF} {Length: 2544} {NoTransDecoderORF} {RNA1509_52997} {RNA1310_26256} {RNA815_48995}
5. MligTC455_27854 108 2.26 Mlig455_038475

Neo: -

Age: -

 0.97 - - 0.970 - - - Mlig455_038475 {REF} {Length: 2901} {Pfam: Zinc knuckle [PF00098.25, score=21.6]} {RNA1509_24163} {RNA1310_131.1} {RNA815_52.1}
6. MligTC455_44783 110 2.29 Mlig455_034984

Neo: -

Age: Down-Up-Down

 0.959 - - - - - 0.959 Mlig455_034984 {REF} {Length: 4235} {Pfam: CHY zinc finger [PF05495.14, score=51.7]} {RNA1509_57768} {RNA1310_6209, RNA1509_57768} {RNA1509_57768, RNA815_7285.1}
7. MligTC455_35471 137 2.85 Mlig455_053170

Neo: -

Age: -

 FPGS 0.957 - - - - - 0.957 Mlig455_053170 {REF} {Length: 3972} {Pfam: Mur ligase family, glutamate ligase domain [PF02875.23, score=19.8]} {Human: ENSG00000136877, FPGS, folylpolyglutamate synthase, [RH, Score=326, Expect=8e-105]} {Mouse: ENSMUSG00000009566, Fpgs, folylpolyglutamyl synthetase, [RH, Score=317, Expect=2e-101]} {Dmel: FBgn0030407, CG2543, [RH, Score=253, Expect=2e-77]} {Celegans: WBGene00017777, F25B5.6, Putative folylpolyglutamate synthase, [RH, Score=275, Expect=3e-86]} {Smed: dd_Smed_v6_6956_0_1, dd_Smed_v6_6956_0_1, [RH, Score=282, Expect=4e-89]} {RNA1509_45745, RNA1509_52653} {RNA1310_12883, RNA1509_45745, RNA1509_52653} {RNA1509_45745, RNA1509_52653, RNA815_5992.1}
8. MligTC455_52803 1094 22.78 Mlig455_029127

Neo: -

Age: logFC(26M/2M)=0.213

 PPIG 0.957 - - 0.957 - - - Mlig455_029127 {REF} {Length: 5887} {TRANSSPLICED} {Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD [PF00160.23, score=154.9]; Herpes virus major outer envelope glycoprotein (BLLF1) [PF05109.15, score=19.7]} {Human: ENSG00000138398, PPIG, peptidylprolyl isomerase G, [RH, Score=246, Expect=6e-68]} {Mouse: ENSMUSG00000032525, Nktr, natural killer tumor recognition sequence, [RH, Score=256, Expect=5e-70]; ENSMUSG00000042133, Ppig, peptidyl-prolyl isomerase G (cyclophilin G), [RH, Score=247, Expect=2e-68]} {Dmel: FBgn0039581, Moca-cyp, [RH, Score=262, Expect=4e-72]} {Celegans: WBGene00000884, cyn-8, Peptidyl-prolyl cis-trans isomerase 8, [RH, Score=210, Expect=1e-58]} {Smed: dd_Smed_v6_2064_0_4, dd_Smed_v6_2064_0_4, [RH, Score=288, Expect=3e-81]} {RNA1509_47506} {RNA1310_4222.1} {RNA815_4262}
9. MligTC455_34362 176 3.66 Mlig455_009491

Neo: -

Age: -

 0.955 - - - - - 0.955 Mlig455_009491 {REF} {Length: 2234} {RNA1509_42922} {RNA1310_19001} {RNA815_12597}
10. MligTC455_26156 281 5.85 Mlig455_068347

Neo: -

Age: Up-Down-Up

 ARPP19 0.954 - - - - - 0.954 Mlig455_068347 {REF} {Length: 2071} {TRANSSPLICED} {Pfam: cAMP-regulated phosphoprotein/endosulfine conserved region [PF04667.19, score=32.4]} {Human: ENSG00000128989, ARPP19, cAMP regulated phosphoprotein 19, [Score=74.3, Expect=2e-17]} {Mouse: ENSMUSG00000007656, Arpp19, cAMP-regulated phosphoprotein 19, [Score=75.9, Expect=3e-18]; ENSMUSG00000038619, Ensa, endosulfine alpha, [Score=72.4, Expect=1e-16]} {Dmel: FBgn0061515, endos, endosulfine, [Score=63.5, Expect=2e-13]} {Smed: dd_Smed_v6_4126_0_2, dd_Smed_v6_4126_0_2, [Score=71.2, Expect=1e-16]} {RNA1509_41546} {RNA1310_25045.1, RNA1509_41546} {RNA1509_41546, RNA815_23953}
11. MligTC455_33779 796 16.59 Mlig455_016303

Neo: Int S/G2/M

Age: -

 SCFD1 0.954 - - 0.954 - - - Mlig455_016303 {REF} {Length: 2821} {TRANSSPLICED} {Pfam: Sec1 family [PF00995.25, score=368.0]} {Human: ENSG00000092108, SCFD1, sec1 family domain containing 1, [RH, Score=634, Expect=0.0]} {Mouse: ENSMUSG00000020952, Scfd1, Sec1 family domain containing 1, [RH, Score=632, Expect=0.0]} {Dmel: FBgn0264978, Slh, SLY-1 homologous, [RH, Score=561, Expect=0.0]} {Celegans: WBGene00009654, sly-1, SLY1 homolog, [RH, Score=514, Expect=6e-175]} {Smed: dd_Smed_v6_2992_0_1, dd_Smed_v6_2992_0_1, [RH, Score=562, Expect=0.0]} {RNA1509_9353} {RNA1310_11016.1, RNA1509_9353} {RNA1509_9353, RNA815_890.1}
12. MligTC455_17232 125 2.61 Mlig455_059863

Neo: Irradiation

Age: -

Region-enriched R4: 2.808/0.00975

 0.953 - - 0.953 - - - Mlig455_059863 {REF} {Length: 2524} {RNA1509_33651, RNA1509_58575} {RNA1310_12243, RNA1509_58575} {RNA1509_58575, RNA815_15468}
13. MligTC455_44179 915 19.06 Mlig455_011678, Mlig455_049913

Neo: Int S/G2/M

Age: -

 GNPTG 0.953 - - 0.953 - - -

Mlig455_011678 {REF} {Length: 3839} {TRANSSPLICED} {Pfam: Neurochondrin [PF05536.13, score=36.4]; Glucosidase II beta subunit-like protein [PF13015.8, score=25.2]} {Human: ENSG00000090581, GNPTG, N-acetylglucosamine-1-phosphate transferase subunit gamma, [Score=52.0, Expect=1e-06]} {Mouse: ENSMUSG00000035521, Gnptg, N-acetylglucosamine-1-phosphotransferase, gamma subunit, [Score=55.5, Expect=7e-08]} {RNA1509_14061} {RNA1310_8748.1} {RNA815_4891.1}

Mlig455_049913 {REF} {Length: 4432} {TRANSSPLICED} {Pfam: Neurochondrin [PF05536.13, score=55.0]; Glucosidase II beta subunit-like protein [PF13015.8, score=29.1]} {Human: ENSG00000090581, GNPTG, N-acetylglucosamine-1-phosphate transferase subunit gamma, [RH, Score=100, Expect=3e-22]} {Mouse: ENSMUSG00000035521, Gnptg, N-acetylglucosamine-1-phosphotransferase, gamma subunit, [RH, Score=101, Expect=7e-23]} {Dmel: FBgn0032643, GCS2beta, Glucosidase 2 beta subunit, [Score=62.4, Expect=1e-09]} {RNA1509_14061} {RNA1310_8748.1} {RNA815_4891.1}
14. MligTC455_15701 134 2.79 Mlig455_034847

Neo: -

Age: -

 NEK9 0.952 - - 0.952 - - - Mlig455_034847 {REF} {Length: 3309} {Pfam: Protein kinase domain [PF00069.27, score=196.8]; Regulator of chromosome condensation (RCC1) repeat [PF00415.20, score=167.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=136.5]; Regulator of chromosome condensation (RCC1) repeat [PF13540.8, score=78.8]; Fungal protein kinase [PF17667.3, score=20.1]} {Human: ENSG00000119638, NEK9, NIMA related kinase 9, [RH, Score=743, Expect=0.0]} {Mouse: ENSMUSG00000034290, Nek9, NIMA (never in mitosis gene a)-related expressed kinase 9, [RH, Score=724, Expect=0.0]} {Dmel: FBgn0045980, niki, nimA-like kinase, [Score=308, Expect=2e-91]} {Celegans: WBGene00021461, nekl-1, NEK (NEver in mitosis Kinase) Like, [Score=355, Expect=3e-108]} {Smed: dd_Smed_v6_8692_0_1, dd_Smed_v6_8692_0_1, [RH, Score=576, Expect=0.0]} {RNA1509_4066, RNA1509_47408} {RNA1310_4454, RNA1509_47408} {RNA1509_47408, RNA815_1625}
15. MligTC455_35873 265 5.53 Mlig455_042784

Neo: -

Age: -

 KCTD20 0.952 - - - - - 0.952 Mlig455_042784 {REF} {Length: 5331} {TRANSSPLICED} {Pfam: BTB/POZ domain [PF16017.7, score=32.5]} {Human: ENSG00000112078, KCTD20, potassium channel tetramerization domain containing 20, [Score=213, Expect=9e-63]} {Mouse: ENSMUSG00000005936, Kctd20, potassium channel tetramerisation domain containing 20, [Score=213, Expect=2e-63]} {Dmel: FBgn0035107, mri, mrityu, [Score=230, Expect=4e-69]} {Celegans: WBGene00019888, btbd-10, BTB/POZ Domain-containing protein homolog, [Score=187, Expect=1e-52]} {Smed: dd_Smed_v6_6116_1_1, dd_Smed_v6_6116_1_1, [Score=221, Expect=2e-64]} {RNA1509_27187} {RNA1310_11918.1} {RNA815_16967}
16. MligTC455_44938 358 7.46 Mlig455_007776

Neo: -

Age: -

 0.952 - - 0.952 - - - Mlig455_007776 {REF} {Length: 2239} {TRANSSPLICED} {RNA1509_16551, RNA1509_53284} {RNA1310_29318, RNA1509_16551, RNA1509_53284} {RNA1509_16551, RNA1509_53284, RNA815_12468}
17. MligTC455_26490 99 2.06 Mlig455_066592

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_066592 {REF} {Length: 6092} {TRANSSPLICED} {RNA1509_3283, RNA1509_34400, RNA1509_53047} {RNA1310_2487, RNA1509_34400, RNA1509_53047} {RNA1509_34400, RNA1509_53047, RNA815_873}
18. MligTC455_31216 103 2.15 Mlig455_007970, Mlig455_033836

Neo: -

Age: -

 0.951 - - 0.951 - - -

Mlig455_007970 {REF} {Length: 4393} {RNA1509_47848} {RNA1310_23510} {RNA815_21831}

Mlig455_033836 {REF} {Length: 7022} {RNA1509_51255} {RNA1310_40336.1} {RNA815_39433}
19. MligTC455_24499 186 3.89 Mlig455_030409

Neo: -

Age: Up-Down-Down

 0.95 - - 0.950 - - - Mlig455_030409 {REF} {Length: 6017} {RNA1509_19385, RNA1509_47812} {RNA1310_4811.1, RNA1509_47812} {RNA1509_47812, RNA815_2227}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA