TomoSeq data search

Data search

Results for MligTC455_49960

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_49960	1384	28.84	Mlig455_031699, Mlig455_031705, Mlig455_040125	Neo: Int S/G2/M Age: Down-Up-Up, logFC(26M/2M)=0.252 Region-enriched R5: 2.333/0.00101 Regeneration-enriched R6: 2.260 Regeneration-enriched BL: 2.199	DDX18	Mlig455_031699 {REF} {Length: 3343} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=156.7]; Helicase conserved C-terminal domain [PF00271.33, score=88.1]; Domain of unknown function (DUF4217) [PF13959.8, score=60.3]; Type III restriction enzyme, res subunit [PF04851.17, score=33.0]} {Human: ENSG00000088205, DDX18, DEAD-box helicase 18, [RH, Score=641, Expect=0.0]} {Mouse: ENSMUSG00000001674, Ddx18, DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, [RH, Score=633, Expect=0.0]} {Dmel: FBgn0266581, pit, pitchoune, [RH, Score=648, Expect=0.0]} {Celegans: WBGene00015232, B0511.6, RNA helicase, [RH, Score=584, Expect=0.0]} {Smed: dd_Smed_v6_10133_0_1, dd_Smed_v6_10133_0_1, [RH, Score=502, Expect=4e-173]} {RNA1509_29214} {RNA1310_12090} {RNA815_6437} Mlig455_031705 {REF} {Length: 2706} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=156.7]; Helicase conserved C-terminal domain [PF00271.33, score=88.1]; Domain of unknown function (DUF4217) [PF13959.8, score=60.2]; Type III restriction enzyme, res subunit [PF04851.17, score=32.9]} {Human: ENSG00000088205, DDX18, DEAD-box helicase 18, [RH, Score=642, Expect=0.0]} {Mouse: ENSMUSG00000001674, Ddx18, DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, [RH, Score=632, Expect=0.0]} {Dmel: FBgn0266581, pit, pitchoune, [RH, Score=648, Expect=0.0]} {Celegans: WBGene00015232, B0511.6, RNA helicase, [RH, Score=585, Expect=0.0]} {Smed: dd_Smed_v6_10133_0_1, dd_Smed_v6_10133_0_1, [RH, Score=502, Expect=4e-173]} {RNA1509_18601, RNA1509_20245, RNA1509_29214, RNA1509_37895, RNA1509_45006, RNA1509_45007, RNA1509_55896, RNA1509_56010} {RNA1310_12090, RNA1509_18601, RNA1509_20245, RNA1509_29214, RNA1509_37895, RNA1509_45006, RNA1509_45007, RNA1509_55896, RNA1509_56010} {RNA1509_18601, RNA1509_20245, RNA1509_29214, RNA1509_37895, RNA1509_45006, RNA1509_45007, RNA1509_55896, RNA1509_56010, RNA815_6437} Mlig455_040125 {REF} {Length: 1190} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=46.7]} {Human: ENSG00000088205, DDX18, DEAD-box helicase 18, [Score=79.0, Expect=2e-17]} {Mouse: ENSMUSG00000001674, Ddx18, DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, [Score=76.3, Expect=1e-16]} {Dmel: FBgn0266581, pit, pitchoune, [Score=82.0, Expect=9e-19]} {Celegans: WBGene00015232, B0511.6, RNA helicase, [Score=76.3, Expect=6e-17]} {Smed: dd_Smed_v6_10133_0_1, dd_Smed_v6_10133_0_1, [Score=72.4, Expect=1e-15]} {RNA1509_56010} {RNA1310_12090} {RNA815_6437}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_49960

1384

28.84

Mlig455_031699, Mlig455_031705, Mlig455_040125

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.252

Region-enriched R5: 2.333/0.00101

Regeneration-enriched R6: 2.260
Regeneration-enriched BL: 2.199

DDX18

Mlig455_031699 {REF} {Length: 3343} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=156.7]; Helicase conserved C-terminal domain [PF00271.33, score=88.1]; Domain of unknown function (DUF4217) [PF13959.8, score=60.3]; Type III restriction enzyme, res subunit [PF04851.17, score=33.0]} {Human: ENSG00000088205, DDX18, DEAD-box helicase 18, [RH, Score=641, Expect=0.0]} {Mouse: ENSMUSG00000001674, Ddx18, DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, [RH, Score=633, Expect=0.0]} {Dmel: FBgn0266581, pit, pitchoune, [RH, Score=648, Expect=0.0]} {Celegans: WBGene00015232, B0511.6, RNA helicase, [RH, Score=584, Expect=0.0]} {Smed: dd_Smed_v6_10133_0_1, dd_Smed_v6_10133_0_1, [RH, Score=502, Expect=4e-173]} {RNA1509_29214} {RNA1310_12090} {RNA815_6437}

Mlig455_031705 {REF} {Length: 2706} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=156.7]; Helicase conserved C-terminal domain [PF00271.33, score=88.1]; Domain of unknown function (DUF4217) [PF13959.8, score=60.2]; Type III restriction enzyme, res subunit [PF04851.17, score=32.9]} {Human: ENSG00000088205, DDX18, DEAD-box helicase 18, [RH, Score=642, Expect=0.0]} {Mouse: ENSMUSG00000001674, Ddx18, DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, [RH, Score=632, Expect=0.0]} {Dmel: FBgn0266581, pit, pitchoune, [RH, Score=648, Expect=0.0]} {Celegans: WBGene00015232, B0511.6, RNA helicase, [RH, Score=585, Expect=0.0]} {Smed: dd_Smed_v6_10133_0_1, dd_Smed_v6_10133_0_1, [RH, Score=502, Expect=4e-173]} {RNA1509_18601, RNA1509_20245, RNA1509_29214, RNA1509_37895, RNA1509_45006, RNA1509_45007, RNA1509_55896, RNA1509_56010} {RNA1310_12090, RNA1509_18601, RNA1509_20245, RNA1509_29214, RNA1509_37895, RNA1509_45006, RNA1509_45007, RNA1509_55896, RNA1509_56010} {RNA1509_18601, RNA1509_20245, RNA1509_29214, RNA1509_37895, RNA1509_45006, RNA1509_45007, RNA1509_55896, RNA1509_56010, RNA815_6437}

Mlig455_040125 {REF} {Length: 1190} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=46.7]} {Human: ENSG00000088205, DDX18, DEAD-box helicase 18, [Score=79.0, Expect=2e-17]} {Mouse: ENSMUSG00000001674, Ddx18, DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, [Score=76.3, Expect=1e-16]} {Dmel: FBgn0266581, pit, pitchoune, [Score=82.0, Expect=9e-19]} {Celegans: WBGene00015232, B0511.6, RNA helicase, [Score=76.3, Expect=6e-17]} {Smed: dd_Smed_v6_10133_0_1, dd_Smed_v6_10133_0_1, [Score=72.4, Expect=1e-15]} {RNA1509_56010} {RNA1310_12090} {RNA815_6437}

Cumulative graph for MligTC455_49960

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-6.905	5.079	0.04380	0.50538
RegionR2	0.193	5.079	0.77168	1.00000
RegionR3	1.038	5.079	0.19188	0.72881
RegionR4	1.535	5.079	0.05524	0.20636
RegionR5	2.333	5.079	0.00005	0.00101
RegionR6	0.552	5.079	0.54038	1.00000
RegionR7	1.174	5.079	0.17990	0.77658
RegionR8	0.08	5.079	0.83162	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	7.396	5.079	0.03288	0.63715
RegenerationR2	1.55	5.079	0.00227	0.07164
RegenerationR3	1.039	5.079	0.05975	0.41630
RegenerationR4	1.412	5.079	0.01133	0.16250
RegenerationR5	0.377	5.079	0.45771	0.83486
RegenerationR6	2.26	5.079	0.00005	0.00585
RegenerationBL	2.199	5.079	0.00001	0.00110
RegenerationTP	1.007	5.079	0.12192	0.53092

Genes with expression patterns similar to MligTC455_49960

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_49960	1384	28.84	Mlig455_031699, Mlig455_031705, Mlig455_040125	Neo: Int S/G2/M Age: Down-Up-Up, logFC(26M/2M)=0.252 Region-enriched R5: 2.333/0.00101 Regeneration-enriched R6: 2.260 Regeneration-enriched BL: 2.199	DDX18	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_031699 {REF} {Length: 3343} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=156.7]; Helicase conserved C-terminal domain [PF00271.33, score=88.1]; Domain of unknown function (DUF4217) [PF13959.8, score=60.3]; Type III restriction enzyme, res subunit [PF04851.17, score=33.0]} {Human: ENSG00000088205, DDX18, DEAD-box helicase 18, [RH, Score=641, Expect=0.0]} {Mouse: ENSMUSG00000001674, Ddx18, DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, [RH, Score=633, Expect=0.0]} {Dmel: FBgn0266581, pit, pitchoune, [RH, Score=648, Expect=0.0]} {Celegans: WBGene00015232, B0511.6, RNA helicase, [RH, Score=584, Expect=0.0]} {Smed: dd_Smed_v6_10133_0_1, dd_Smed_v6_10133_0_1, [RH, Score=502, Expect=4e-173]} {RNA1509_29214} {RNA1310_12090} {RNA815_6437} Mlig455_031705 {REF} {Length: 2706} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=156.7]; Helicase conserved C-terminal domain [PF00271.33, score=88.1]; Domain of unknown function (DUF4217) [PF13959.8, score=60.2]; Type III restriction enzyme, res subunit [PF04851.17, score=32.9]} {Human: ENSG00000088205, DDX18, DEAD-box helicase 18, [RH, Score=642, Expect=0.0]} {Mouse: ENSMUSG00000001674, Ddx18, DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, [RH, Score=632, Expect=0.0]} {Dmel: FBgn0266581, pit, pitchoune, [RH, Score=648, Expect=0.0]} {Celegans: WBGene00015232, B0511.6, RNA helicase, [RH, Score=585, Expect=0.0]} {Smed: dd_Smed_v6_10133_0_1, dd_Smed_v6_10133_0_1, [RH, Score=502, Expect=4e-173]} {RNA1509_18601, RNA1509_20245, RNA1509_29214, RNA1509_37895, RNA1509_45006, RNA1509_45007, RNA1509_55896, RNA1509_56010} {RNA1310_12090, RNA1509_18601, RNA1509_20245, RNA1509_29214, RNA1509_37895, RNA1509_45006, RNA1509_45007, RNA1509_55896, RNA1509_56010} {RNA1509_18601, RNA1509_20245, RNA1509_29214, RNA1509_37895, RNA1509_45006, RNA1509_45007, RNA1509_55896, RNA1509_56010, RNA815_6437} Mlig455_040125 {REF} {Length: 1190} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=46.7]} {Human: ENSG00000088205, DDX18, DEAD-box helicase 18, [Score=79.0, Expect=2e-17]} {Mouse: ENSMUSG00000001674, Ddx18, DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, [Score=76.3, Expect=1e-16]} {Dmel: FBgn0266581, pit, pitchoune, [Score=82.0, Expect=9e-19]} {Celegans: WBGene00015232, B0511.6, RNA helicase, [Score=76.3, Expect=6e-17]} {Smed: dd_Smed_v6_10133_0_1, dd_Smed_v6_10133_0_1, [Score=72.4, Expect=1e-15]} {RNA1509_56010} {RNA1310_12090} {RNA815_6437}
2.	MligTC455_52213	1604	33.41	Mlig455_070178	Neo: - Age: - Regeneration-upregulated BL: 1.322 Regeneration-enriched BL: 1.322	MARK2	1.689	-	-	-	0.733	-	0.956	Mlig455_070178 {REF} {Length: 4522} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=253.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=154.7]; Kinase-like [PF14531.8, score=30.7]; ABC1 atypical kinase-like domain [PF03109.18, score=27.9]; RIO1 family [PF01163.24, score=19.2]} {Human: ENSG00000072518, MARK2, microtubule affinity regulating kinase 2, [RH, Score=575, Expect=0.0]; ENSG00000075413, MARK3, microtubule affinity regulating kinase 3, [RH, Score=571, Expect=0.0]; ENSG00000007047, MARK4, microtubule affinity regulating kinase 4, [RH, Score=559, Expect=0.0]; ENSG00000116141, MARK1, microtubule affinity regulating kinase 1, [RH, Score=552, Expect=0.0]} {Mouse: ENSMUSG00000024969, Mark2, MAP/microtubule affinity regulating kinase 2, [RH, Score=575, Expect=0.0]; ENSMUSG00000007411, Mark3, MAP/microtubule affinity regulating kinase 3, [RH, Score=570, Expect=0.0]; ENSMUSG00000030397, Mark4, MAP/microtubule affinity regulating kinase 4, [RH, Score=553, Expect=0.0]; ENSMUSG00000026620, Mark1, MAP/microtubule affinity regulating kinase 1, [RH, Score=550, Expect=0.0]} {Dmel: FBgn0260934, par-1, [RH, Score=566, Expect=0.0]} {Celegans: WBGene00003916, par-1, Serine/threonine-protein kinase par-1, [RH, Score=555, Expect=0.0]} {Smed: dd_Smed_v6_3685_0_1, dd_Smed_v6_3685_0_1, [RH, Score=585, Expect=0.0]} {RNA1509_2419} {RNA1310_1494} {RNA815_2395}
3.	MligTC455_29571	479	9.99	Mlig455_040381	Neo: - Age: - Region-enriched R4: 1.349/0.03232	TRAF3	0.964	-	-	-	0.964	-	-	Mlig455_040381 {REF} {Length: 4738} {TRANSSPLICED} {Pfam: TRAF-type zinc finger [PF02176.20, score=31.1]; zinc finger of C3HC4-type, RING [PF15227.8, score=21.9]; zf-RING of BARD1-type protein [PF14835.8, score=19.2]} {Human: ENSG00000131323, TRAF3, TNF receptor associated factor 3, [RH, Score=300, Expect=2e-94]} {Mouse: ENSMUSG00000021277, Traf3, TNF receptor-associated factor 3, [RH, Score=298, Expect=6e-94]; ENSMUSG00000111385, Traf5, TNF receptor-associated factor 5, [RH, Score=292, Expect=1e-91]; ENSMUSG00000026637, Traf5, TNF receptor-associated factor 5, [RH, Score=292, Expect=1e-91]} {Dmel: FBgn0026319, Traf4, TNF-receptor-associated factor 4, [Score=122, Expect=1e-29]} {Celegans: WBGene00006612, trf-1, TNF Receptor Associated Factor (TRAF) homolog; TRF-1, [Score=101, Expect=7e-23]} {Smed: dd_Smed_v6_4148_0_1, dd_Smed_v6_4148_0_1, [RH, Score=194, Expect=4e-56]} {RNA1509_2193, RNA1509_24774, RNA1509_35341, RNA1509_54605} {RNA1310_5587.1, RNA1509_24774, RNA1509_35341, RNA1509_54605} {RNA1509_24774, RNA1509_35341, RNA1509_54605, RNA815_4083.2}
4.	MligTC455_44495	322	6.7	Mlig455_039415	Neo: - Age: -	STAT4	0.958	-	-	-	-	-	0.958	Mlig455_039415 {REF} {Length: 2741} {TRANSSPLICED} {Pfam: SH2 domain [PF00017.26, score=23.5]} {Human: ENSG00000138378, STAT4, signal transducer and activator of transcription 4, [RH, Score=70.5, Expect=6e-12]} {Mouse: ENSMUSG00000062939, Stat4, signal transducer and activator of transcription 4, [RH, Score=76.3, Expect=7e-14]} {RNA1509_16743, RNA1509_17436} {RNA1310_6522.1, RNA1509_16743, RNA1509_17436} {RNA1509_16743, RNA1509_17436, RNA815_3533}
5.	MligTC455_25384	164	3.42	Mlig455_017652	Neo: - Age: - Regeneration-enriched R6: 4.225 Regeneration-enriched R3: 3.829 Regeneration-enriched R5: 3.262 Regeneration-enriched R4: 3.234	SF3B3	0.954	-	-	-	-	-	0.954	Mlig455_017652 {REF} {Length: 4056} {Pfam: Mono-functional DNA-alkylating methyl methanesulfonate N-term [PF10433.11, score=591.2]; CPSF A subunit region [PF03178.17, score=274.4]} {Human: ENSG00000189091, SF3B3, splicing factor 3b subunit 3, [RH, Score=1840, Expect=0.0]} {Mouse: ENSMUSG00000033732, Sf3b3, splicing factor 3b, subunit 3, [RH, Score=1841, Expect=0.0]} {Dmel: FBgn0035162, Sf3b3, Splicing factor 3b subunit 3, [RH, Score=1713, Expect=0.0]} {Celegans: WBGene00019323, teg-4, Tumorous Enhancer of Glp-1(Gf), [RH, Score=1405, Expect=0.0]} {Smed: dd_Smed_v6_4241_0_1, dd_Smed_v6_4241_0_1, [RH, Score=1600, Expect=0.0]} {RNA1509_25911} {RNA1310_2503} {RNA815_4779}
6.	MligTC455_20980	555	11.57	Mlig455_052512	Neo: - Age: -		0.951	-	-	-	-	-	0.951	Mlig455_052512 {REF} {Length: 494} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_55721} {RNA1310_5855} {RNA815_34079}
7.	MligTC455_36414	939	19.56	Mlig455_046069, Mlig455_046076	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.373	DDX10	0.951	-	-	-	-	0.951	-	Mlig455_046069 {REF} {Length: 2433} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=141.2]; Helicase conserved C-terminal domain [PF00271.33, score=84.3]; Domain of unknown function (DUF4217) [PF13959.8, score=39.0]} {Human: ENSG00000178105, DDX10, DEAD-box helicase 10, [RH, Score=437, Expect=5e-141]} {Mouse: ENSMUSG00000053289, Ddx10, DEAD (Asp-Glu-Ala-Asp) box polypeptide 10, [RH, Score=401, Expect=1e-127]} {Dmel: FBgn0030855, CG5800, [RH, Score=387, Expect=4e-123]} {Celegans: WBGene00021277, Y23H5B.6, RNA helicase, [RH, Score=409, Expect=2e-132]} {Smed: dd_Smed_v6_10133_0_1, dd_Smed_v6_10133_0_1, [Score=271, Expect=2e-82]} {RNA1509_22315} {RNA1310_8808} {RNA815_3348.1} Mlig455_046076 {REF} {Length: 2433} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=141.2]; Helicase conserved C-terminal domain [PF00271.33, score=84.3]; Domain of unknown function (DUF4217) [PF13959.8, score=39.0]} {Human: ENSG00000178105, DDX10, DEAD-box helicase 10, [RH, Score=436, Expect=5e-141]} {Mouse: ENSMUSG00000053289, Ddx10, DEAD (Asp-Glu-Ala-Asp) box polypeptide 10, [RH, Score=401, Expect=1e-127]} {Dmel: FBgn0030855, CG5800, [RH, Score=387, Expect=5e-123]} {Celegans: WBGene00021277, Y23H5B.6, RNA helicase, [RH, Score=409, Expect=2e-132]} {Smed: dd_Smed_v6_10133_0_1, dd_Smed_v6_10133_0_1, [Score=271, Expect=2e-82]} {RNA1509_10762, RNA1509_22315} {RNA1310_8808, RNA1509_10762, RNA1509_22315} {RNA1509_10762, RNA1509_22315, RNA815_3348.1}
8.	MligTC455_37612	366	7.62	Mlig455_026659	Neo: Int S/G2/M Age: - Region-enriched R5: 3.326/0.00001		0.95	0.950	-	-	-	-	-	Mlig455_026659 {REF} {Length: 1882} {TRANSSPLICED} {RNA1509_32576, RNA1509_34929} {RNA1310_30559.1, RNA1509_32576, RNA1509_34929} {RNA1509_32576, RNA1509_34929, RNA815_13235.1}
9.	MligTC455_42289	636	13.25	Mlig455_027508	Neo: - Age: - Region-enriched R5: 1.036/0.00139	SACM1L	0.95	-	-	-	-	-	0.950	Mlig455_027508 {REF} {Length: 2956} {Pfam: SacI homology domain [PF02383.20, score=269.3]} {Human: ENSG00000211456, SACM1L, SAC1 like phosphatidylinositide phosphatase, [RH, Score=532, Expect=0.0]} {Mouse: ENSMUSG00000025240, Sacm1l, SAC1 suppressor of actin mutations 1-like (yeast), [RH, Score=531, Expect=0.0]} {Dmel: FBgn0283500, Sac1, Sac1 phosphatase, [RH, Score=433, Expect=2e-145]} {Celegans: WBGene00009264, sac-1, SAC1 PIP phosphatase (Yeast Suppressor of ACtin) homolog, [RH, Score=404, Expect=6e-134]} {Smed: dd_Smed_v6_3882_0_1, dd_Smed_v6_3882_0_1, [RH, Score=459, Expect=1e-155]} {RNA1509_18875, RNA1509_25818, RNA1509_36443, RNA1509_54775} {RNA1310_3604.2, RNA1509_18875, RNA1509_25818, RNA1509_54775} {RNA1509_18875, RNA1509_25818, RNA1509_54775, RNA815_2551.1}