TomoSeq data search

Data search

Results for MligTC455_50107

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_50107

2042

42.54

Mlig455_003436

Neo: -

Age: logFC(26M/2M)=-0.352

TRPM3

Mlig455_003436 {REF} {Length: 3991} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=70.1]; Ankyrin repeats (many copies) [PF13637.8, score=67.3]; Ion transport protein [PF00520.33, score=59.6]; Ankyrin repeat [PF13606.8, score=58.4]; Ankyrin repeat [PF00023.32, score=44.8]; Ankyrin repeats (many copies) [PF13857.8, score=42.3]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=147, Expect=3e-35]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=150, Expect=3e-36]} {Dmel: FBgn0016920, nompC, no mechanoreceptor potential C, [Score=78.6, Expect=3e-14]} {Celegans: WBGene00001796, gtl-2, Gon-Two Like (TRP subfamily), [Score=82.0, Expect=2e-15]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [RH, Score=172, Expect=6e-44]} {RNA1509_2096, RNA1509_45967, RNA1509_47720} {RNA1310_2778.1, RNA1509_2096, RNA1509_45967, RNA1509_47720} {RNA1509_2096, RNA1509_45967, RNA1509_47720, RNA815_765}

Cumulative graph for MligTC455_50107

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.842	5.511	0.38049	1.00000
RegionR2	0.249	5.511	0.54497	0.91161
RegionR3	-0.125	5.511	0.71661	1.00000
RegionR4	0.074	5.511	0.85430	1.00000
RegionR5	-0.59	5.511	0.08292	0.26875
RegionR6	0.375	5.511	0.26694	0.85504
RegionR7	0.566	5.511	0.13977	0.69951
RegionR8	0.293	5.511	0.54806	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.358	5.511	0.78573	1.00000
RegenerationR2	0.517	5.511	0.17315	0.61307
RegenerationR3	0.273	5.511	0.51122	0.86193
RegenerationR4	-0.222	5.511	0.59810	0.91256
RegenerationR5	0.369	5.511	0.36311	0.77385
RegenerationR6	-0.104	5.511	0.79248	0.97354
RegenerationBL	1.329	5.511	0.00034	0.01077
RegenerationTP	0.515	5.511	0.22797	0.67306

Genes with expression patterns similar to MligTC455_50107

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_50107	2042	42.54	Mlig455_003436	Neo: - Age: logFC(26M/2M)=-0.352	TRPM3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_003436 {REF} {Length: 3991} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=70.1]; Ankyrin repeats (many copies) [PF13637.8, score=67.3]; Ion transport protein [PF00520.33, score=59.6]; Ankyrin repeat [PF13606.8, score=58.4]; Ankyrin repeat [PF00023.32, score=44.8]; Ankyrin repeats (many copies) [PF13857.8, score=42.3]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=147, Expect=3e-35]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=150, Expect=3e-36]} {Dmel: FBgn0016920, nompC, no mechanoreceptor potential C, [Score=78.6, Expect=3e-14]} {Celegans: WBGene00001796, gtl-2, Gon-Two Like (TRP subfamily), [Score=82.0, Expect=2e-15]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [RH, Score=172, Expect=6e-44]} {RNA1509_2096, RNA1509_45967, RNA1509_47720} {RNA1310_2778.1, RNA1509_2096, RNA1509_45967, RNA1509_47720} {RNA1509_2096, RNA1509_45967, RNA1509_47720, RNA815_765}
2.	MligTC455_50108	1530	31.88	Mlig455_030660	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.538	TRPM3	5.377	0.947	0.887	0.968	0.760	0.994	0.821	Mlig455_030660 {REF} {Length: 3971} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=70.9]; Ankyrin repeats (many copies) [PF13637.8, score=67.2]; Ion transport protein [PF00520.33, score=59.6]; Ankyrin repeat [PF13606.8, score=58.7]; Ankyrin repeat [PF00023.32, score=45.3]; Ankyrin repeats (many copies) [PF13857.8, score=43.6]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=148, Expect=3e-35]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=150, Expect=3e-36]} {Dmel: FBgn0016920, nompC, no mechanoreceptor potential C, [Score=78.6, Expect=3e-14]} {Celegans: WBGene00001796, gtl-2, Gon-Two Like (TRP subfamily), [Score=81.6, Expect=2e-15]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [RH, Score=172, Expect=6e-44]} {RNA1509_2096} {RNA1310_2778.1} {RNA815_765}
3.	MligTC455_29346	2352	48.99	Mlig455_007074, Mlig455_007076, Mlig455_014824	Neo: - Age: -		1.73	-	0.758	-	0.972	-	-	Mlig455_007074 {REF} {Length: 4334} {Pfam: A-macroglobulin TED domain [PF07678.16, score=82.7]; A-macroglobulin receptor binding domain [PF07677.16, score=28.6]; Alpha-2-macroglobulin family [PF00207.24, score=28.4]} {Dmel: FBgn0267488, Mcr, Macroglobulin complement-related, [Score=241, Expect=3e-66]} {Smed: dd_Smed_v6_3070_0_1, dd_Smed_v6_3070_0_1, [Score=353, Expect=1e-104]} {RNA1509_41707} {RNA1310_1024.2} {RNA815_332} Mlig455_007076 {REF} {Length: 1863} {RNA1509_58540} {RNA1310_48406} {RNA815_1964} Mlig455_014824 {REF} {Length: 3277} {Pfam: Peptidase family M13 [PF05649.15, score=23.5]} {RNA1310_133953}
4.	MligTC455_44592	1049	21.86	Mlig455_057747	Neo: - Age: -		0.963	-	-	-	-	0.963	-	Mlig455_057747 {REF} {Length: 4064} {RNA1509_59863} {RNA1310_10688} {RNA815_511.1}
5.	MligTC455_38370	292	6.09	Mlig455_026436	Neo: - Age: logFC(26M/2M)=-0.440	SSUH2	0.959	-	-	-	-	0.959	-	Mlig455_026436 {REF} {Length: 1887} {Human: ENSG00000125046, SSUH2, ssu-2 homolog (C. elegans), [RH, Score=233, Expect=6e-72]} {Mouse: ENSMUSG00000034387, Ssu2, ssu-2 homolog (C. elegans), [RH, Score=193, Expect=3e-57]} {RNA1509_44589} {RNA1310_13612, RNA1509_44589} {RNA1509_44589, RNA815_1019.1}
6.	MligTC455_38371	288	6	Mlig455_026468	Neo: - Age: -	SSUH2	0.954	-	-	-	-	0.954	-	Mlig455_026468 {REF} {Length: 1776} {Pfam: DnaJ central domain [PF00684.21, score=19.0]} {Human: ENSG00000125046, SSUH2, ssu-2 homolog (C. elegans), [RH, Score=221, Expect=1e-67]} {Mouse: ENSMUSG00000034387, Ssu2, ssu-2 homolog (C. elegans), [Score=189, Expect=1e-55]} {RNA1509_44589} {RNA1310_13612} {RNA815_1019.1}
7.	MligTC455_30000	1520	31.66	Mlig455_006409	Neo: - Age: Down-Down-Up	NOTCH1	0.953	-	-	-	-	0.953	-	Mlig455_006409 {REF} {Length: 2677} {TRANSSPLICED} {Pfam: EGF-like domain [PF00008.29, score=198.7]; Human growth factor-like EGF [PF12661.9, score=99.3]; EGF-like domain [PF07974.15, score=23.3]} {Human: ENSG00000148400, NOTCH1, notch 1, [Score=306, Expect=2e-87]; ENSG00000134250, NOTCH2, notch 2, [Score=305, Expect=5e-87]} {Mouse: ENSMUSG00000026923, Notch1, notch 1, [Score=312, Expect=1e-89]; ENSMUSG00000027878, Notch2, notch 2, [Score=300, Expect=9e-86]} {Dmel: FBgn0259685, crb, crumbs, [Score=291, Expect=1e-82]} {Celegans: WBGene00018547, clec-78, C-type LECtin, [Score=234, Expect=5e-64]} {Smed: dd_Smed_v6_7067_0_1, dd_Smed_v6_7067_0_1, [Score=236, Expect=9e-65]} {RNA1509_26892} {RNA1310_37026} {RNA815_11987.1}
8.	MligTC455_44591	1042	21.7	Mlig455_013859	Neo: - Age: -	AKNA	0.952	-	-	-	-	0.952	-	Mlig455_013859 {REF} {Length: 5923} {TRANSSPLICED} {Human: ENSG00000106948, AKNA, AT-hook transcription factor, [RH, Score=52.4, Expect=7e-06]} {Mouse: ENSMUSG00000039158, Akna, AT-hook transcription factor, [Score=53.9, Expect=2e-06]} {Smed: dd_Smed_v6_5190_0_1, dd_Smed_v6_5190_0_1, [Score=49.7, Expect=1e-05]} {RNA1509_4010} {RNA1310_713} {RNA815_511.1}
9.	MligTC455_43049	1806	37.62	Mlig455_062571	Neo: - Age: -	ACAN	0.95	-	-	-	-	0.950	-	Mlig455_062571 {REF} {Length: 5543} {TRANSSPLICED} {Human: ENSG00000157766, ACAN, aggrecan, [RH, Score=120, Expect=2e-26]} {Mouse: ENSMUSG00000030607, Acan, aggrecan, [Score=58.2, Expect=9e-08]} {Celegans: WBGene00013762, Y113G7B.12, [Score=57.0, Expect=1e-07]} {RNA1509_5653} {RNA1310_12100} {RNA815_6156.1}

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