M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_50446

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_50446 34 0.70 Mlig455_007560

Neo: -

Age: -

 Mlig455_007560 {REF} {Length: 764} {NoTransDecoderORF} {RNA1310_22923} {RNA815_27594}

Cumulative graph for MligTC455_50446

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.765 0.961 1.00000 1.00000
RegionR2 -1.567 0.961 1.00000 1.00000
RegionR3 -0.931 0.961 1.00000 1.00000
RegionR4 3.556 0.961 0.01948 0.10018
RegionR5 0.705 0.961 0.37105 0.72402
RegionR6 -0.925 0.961 1.00000 1.00000
RegionR7 -0.823 0.961 1.00000 1.00000
RegionR8 -0.78 0.961 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.645 0.961 0.99998 1.00000
RegenerationR2 3.223 0.961 0.02280 0.24834
RegenerationR3 3.858 0.961 0.02793 0.30054
RegenerationR4 0.541 0.961 0.81085 0.98982
RegenerationR5 1.796 0.961 0.17381 0.60304
RegenerationR6 4.188 0.961 0.02083 0.17891
RegenerationBL 0.008 0.961 0.99999 1.00000
RegenerationTP -0.461 0.961 0.99994 1.00000


Genes with expression patterns similar to MligTC455_50446

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_50446 34 0.7 Mlig455_007560

Neo: -

Age: -

 4 1.000 - - 1.000 1.000 1.000 Mlig455_007560 {REF} {Length: 764} {NoTransDecoderORF} {RNA1310_22923} {RNA815_27594}
2. MligTC455_18722 24 0.5 Mlig455_018294

Neo: Int S/G2/M

Age: Up-Down-Down

 PLK2 0.99 - - - 0.990 - - Mlig455_018294 {REF} {Length: 3188} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=53.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=23.3]} {Human: ENSG00000145632, PLK2, polo like kinase 2, [Score=75.1, Expect=3e-15]; ENSG00000166851, PLK1, polo like kinase 1, [Score=73.2, Expect=1e-14]} {Mouse: ENSMUSG00000030867, Plk1, polo like kinase 1, [Score=77.0, Expect=4e-16]; ENSMUSG00000021701, Plk2, polo like kinase 2, [Score=74.7, Expect=3e-15]} {Dmel: FBgn0003124, polo, [Score=65.1, Expect=3e-12]} {Celegans: WBGene00004042, plk-1, Serine/threonine-protein kinase plk-1, [Score=62.8, Expect=2e-11]} {Smed: dd_Smed_v6_3838_0_1, dd_Smed_v6_3838_0_1, [Score=60.5, Expect=6e-11]} {RNA1509_35335} {RNA1310_29286} {RNA815_15815}
3. MligTC455_19387 43 0.89 Mlig455_030654

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.430

 0.989 - - - - - 0.989 Mlig455_030654 {REF} {Length: 2526} {RNA1310_30115} {RNA815_35057}
4. MligTC455_37175 13 0.26 Mlig455_011884

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_011884 {REF} {Length: 941} {NoTransDecoderORF} {RNA1509_44223} {RNA1310_54802} {RNA815_64986}
5. MligTC455_34657 504 10.51 Mlig455_021427

Neo: -

Age: Down-Down-Up

Region-enriched R3: 2.753/0.00003
Region-enriched R4: 2.023/0.04495

 0.967 - - - 0.967 - - Mlig455_021427 {REF} {Length: 3827} {RNA1509_16737, RNA1509_19507, RNA1509_21121, RNA1509_4371} {RNA1310_3223, RNA1509_16737, RNA1509_19507, RNA1509_21121, RNA1509_4371} {RNA1509_16737, RNA1509_19507, RNA1509_21121, RNA1509_4371, RNA815_1504}
6. MligTC455_12804 44 0.92 Mlig455_049628

Neo: -

Age: -

 0.966 0.966 - - - - - Mlig455_049628 {REF} {Length: 1589} {NoTransDecoderORF} {RNA1509_4484} {RNA1310_68827} {RNA815_4833.2}
7. MligTC455_24192 6 0.13 Mlig455_007658

Neo: -

Age: -

 0.966 0.966 - - - - - Mlig455_007658 {REF} {Length: 4552} {RNA1310_19182} {RNA815_30375}
8. MligTC455_38722 624 13 Mlig455_045050

Neo: -

Age: Down-Up-Up

Region-enriched R3: 1.981/0.00167
Region-enriched R4: 1.826/0.01170

 PANK4 0.965 - - - 0.965 - - Mlig455_045050 {REF} {Length: 1653} {Pfam: Fumble [PF03630.16, score=134.8]} {Human: ENSG00000273494, PANK4, pantothenate kinase 4, [Score=106, Expect=3e-24]; ENSG00000157881, PANK4, pantothenate kinase 4, [Score=105, Expect=3e-24]} {Mouse: ENSMUSG00000018846, Pank3, pantothenate kinase 3, [Score=78.6, Expect=1e-15]; ENSMUSG00000033610, Pank1, pantothenate kinase 1, [Score=77.4, Expect=3e-15]} {Dmel: FBgn0011205, fbl, fumble, [Score=89.0, Expect=2e-19]} {Smed: dd_Smed_v6_2075_0_1, dd_Smed_v6_2075_0_1, [RH, Score=229, Expect=2e-72]} {RNA1509_22591, RNA1509_51737} {RNA1310_44453, RNA1509_22591} {RNA1509_22591, RNA815_9614}
9. MligTC455_01479 8 0.16 Mlig455_018082

Neo: Germline

Age: -

 0.964 0.964 - - - - - Mlig455_018082 {REF} {Length: 851} {RNA1310_71658} {RNA815_45524}
10. MligTC455_04859 11 0.22 Mlig455_024950

Neo: -

Age: -

Region-enriched R4: 3.504/0.04750

 0.963 - - - - 0.963 - Mlig455_024950 {REF} {Length: 3538} {Pfam: PMP-22/EMP/MP20/Claudin family [PF00822.22, score=44.0]} {Smed: dd_Smed_v6_20712_0_1, dd_Smed_v6_20712_0_1, [RH, Score=124, Expect=5e-31]} {RNA1509_18844} {RNA1310_42298.1} {RNA815_43979}
11. MligTC455_32482 8 0.17 Mlig455_039898

Neo: Irradiation

Age: Up-Down-Down

 0.963 - - - - 0.963 - Mlig455_039898 {REF} {Length: 7423} {Pfam: Centrosomin N-terminal motif 1 [PF07989.13, score=38.6]; Shugoshin N-terminal coiled-coil region [PF07558.13, score=20.3]} {RNA1509_13154, RNA1509_26472} {RNA1310_251, RNA1509_26472} {RNA1509_26472, RNA815_5928.1}
12. MligTC455_15729 10 0.21 Mlig455_019877

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=0.937

 0.96 - - - - 0.960 - Mlig455_019877 {REF} {Length: 1683} {NoTransDecoderORF} {RNA1509_16231} {RNA1310_8645} {RNA815_19217}
13. MligTC455_57097 11 0.23 Mlig455_030298

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_030298 {REF} {Length: 353} {NoTransDecoderORF}
14. MligTC455_10298 10 0.21 Mlig455_023027

Neo: -

Age: -

 ANGPTL7 0.957 - - - - 0.957 - Mlig455_023027 {REF} {Length: 1281} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=125.3]; PAN domain [PF00024.28, score=20.0]} {Human: ENSG00000171819, ANGPTL7, angiopoietin like 7, [Score=106, Expect=4e-26]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=103, Expect=1e-24]} {Mouse: ENSMUSG00000028989, Angptl7, angiopoietin-like 7, [Score=101, Expect=2e-24]; ENSMUSG00000027460, Angpt4, angiopoietin 4, [Score=98.2, Expect=1e-22]; ENSMUSG00000022309, Angpt1, angiopoietin 1, [Score=97.1, Expect=2e-22]} {Dmel: FBgn0034160, CG5550, [Score=95.9, Expect=2e-23]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=104, Expect=3e-25]} {RNA1310_39646} {RNA815_17918.1}
15. MligTC455_15663 35 0.73 Mlig455_062572

Neo: -

Age: logFC(26M/2M)=1.011

 0.957 0.957 - - - - - Mlig455_062572 {REF} {Length: 1735} {Pfam: PAN domain [PF00024.28, score=21.9]} {RNA1310_35902.2} {RNA815_33023}
16. MligTC455_17229 9 0.18 Mlig455_035586

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_035586 {REF} {Length: 1135} {NoTransDecoderORF} {RNA1509_13138} {RNA1310_14959.1} {RNA815_9852.1}
17. MligTC455_13595 38 0.78 Mlig455_058722, Mlig455_058723

Neo: Irradiation

Age: -

 0.954 - - - - 0.954 -

Mlig455_058722 {REF} {Length: 13237} {Pfam: SnoaL-like domain [PF12680.9, score=37.3]} {RNA1509_13571} {RNA1310_37724.1, RNA1509_13571} {RNA1509_13571, RNA815_52132}

Mlig455_058723 {REF} {Length: 578} {RNA1509_13571} {RNA1310_37724.1} {RNA815_52132}
18. MligTC455_43591 20 0.41 Mlig455_035269

Neo: -

Age: -

 0.953 - - - 0.953 - - Mlig455_035269 {REF} {Length: 674} {TRANSSPLICED} {Pfam: Rhodanese-like domain [PF00581.22, score=43.9]} {Dmel: FBgn0039145, CG6000, [RH, Score=73.6, Expect=2e-17]} {Smed: dd_Smed_v6_530_0_1, dd_Smed_v6_530_0_1, [RH, Score=48.5, Expect=6e-08]} {RNA1509_8867} {RNA1310_22990.1} {RNA815_11557}
19. MligTC455_29180 18 0.38 Mlig455_048888

Neo: -

Age: Up-Up-Down

 PHKG1 0.952 - - - - 0.952 - Mlig455_048888 {REF} {Length: 5051} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=255.2]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=125.3]; Kinase-like [PF14531.8, score=33.2]; Ternary complex associated domain 9 [PF19974.1, score=24.2]; PhoP regulatory network protein YrbL [PF10707.11, score=22.2]; Fungal protein kinase [PF17667.3, score=20.2]; Phosphotransferase enzyme family [PF01636.25, score=20.0]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=19.8]; Kinetochore Sim4 complex subunit FTA2 [PF13095.8, score=19.0]; Haspin like kinase domain [PF12330.10, score=18.5]} {Human: ENSG00000164776, PHKG1, phosphorylase kinase catalytic subunit gamma 1, [RH, Score=390, Expect=8e-133]} {Mouse: ENSMUSG00000025537, Phkg1, phosphorylase kinase gamma 1, [RH, Score=384, Expect=2e-130]; ENSMUSG00000030815, Phkg2, phosphorylase kinase, gamma 2 (testis), [RH, Score=370, Expect=5e-125]} {Dmel: FBgn0011754, PhKgamma, Phosphorylase kinase gamma, [RH, Score=395, Expect=3e-135]} {Celegans: WBGene00021753, Y50D7A.3, [RH, Score=314, Expect=3e-102]} {Smed: dd_Smed_v6_7480_0_2, dd_Smed_v6_7480_0_2, [Score=201, Expect=8e-59]} {RNA1509_38006} {RNA1310_13257.1} {RNA815_5265.1}
20. MligTC455_32051 13 0.26 Mlig455_052435

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_052435 {REF} {Length: 4342} {NoTransDecoderORF} {RNA1509_6194} {RNA1310_1675.1} {RNA815_2266}
21. MligTC455_01857 31 0.64 Mlig455_038561, Mlig455_052195

Neo: Germline

Age: -

 0.95 0.950 - - - - -

Mlig455_038561 {REF} {Length: 1042}

Mlig455_052195 {REF} {Length: 1042}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA