M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_51211

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_51211 648 13.49 Mlig455_024628

Neo: -

Age: -

 PDCD2L Mlig455_024628 {REF} {Length: 1481} {TRANSSPLICED} {Pfam: Programmed cell death protein 2, C-terminal putative domain [PF04194.15, score=83.7]} {Human: ENSG00000126249, PDCD2L, programmed cell death 2 like, [RH, Score=103, Expect=2e-24]} {Mouse: ENSMUSG00000002635, Pdcd2l, programmed cell death 2-like, [Score=97.1, Expect=4e-22]} {Celegans: WBGene00011116, pdcd-2, Vacuolar ATPase assembly integral membrane protein VMA21 homolog, [Score=70.5, Expect=3e-13]} {RNA1509_50583} {RNA1310_20947} {RNA815_11084.1}

Cumulative graph for MligTC455_51211

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.993 4.112 0.12033 0.71286
RegionR2 0.402 4.112 0.39240 0.78700
RegionR3 0.173 4.112 0.66103 1.00000
RegionR4 -0.042 4.112 0.92347 1.00000
RegionR5 0.927 4.112 0.00395 0.02904
RegionR6 0.574 4.112 0.13248 0.65469
RegionR7 0.121 4.112 0.81643 1.00000
RegionR8 -0.163 4.112 0.81770 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.83 4.112 0.26055 0.96822
RegenerationR2 -0.079 4.112 0.81039 0.99304
RegenerationR3 0.117 4.112 0.74943 0.96465
RegenerationR4 0.409 4.112 0.26074 0.70845
RegenerationR5 -0.277 4.112 0.37641 0.78477
RegenerationR6 0.523 4.112 0.13732 0.45483
RegenerationBL -0.163 4.112 0.74502 1.00000
RegenerationTP -0.248 4.112 0.67700 1.00000


Genes with expression patterns similar to MligTC455_51211

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_51211 648 13.49 Mlig455_024628

Neo: -

Age: -

 PDCD2L 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_024628 {REF} {Length: 1481} {TRANSSPLICED} {Pfam: Programmed cell death protein 2, C-terminal putative domain [PF04194.15, score=83.7]} {Human: ENSG00000126249, PDCD2L, programmed cell death 2 like, [RH, Score=103, Expect=2e-24]} {Mouse: ENSMUSG00000002635, Pdcd2l, programmed cell death 2-like, [Score=97.1, Expect=4e-22]} {Celegans: WBGene00011116, pdcd-2, Vacuolar ATPase assembly integral membrane protein VMA21 homolog, [Score=70.5, Expect=3e-13]} {RNA1509_50583} {RNA1310_20947} {RNA815_11084.1}
2. MligTC455_44231 510 10.62 Mlig455_020250

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.618/0.00037

 ZNF724 1.682 - 0.731 - 0.951 - - Mlig455_020250 {REF} {Length: 1561} {TRANSSPLICED} {Pfam: Zinc-finger double domain [PF13465.8, score=157.3]; Zinc finger, C2H2 type [PF00096.28, score=117.1]; C2H2-type zinc finger [PF13894.8, score=112.3]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=53.1]; Zinc-finger of C2H2 type [PF12874.9, score=53.1]; C2HE / C2H2 / C2HC zinc-binding finger [PF16278.7, score=44.8]; C2H2-type zinc ribbon [PF15909.7, score=26.3]; C2H2-type zinc finger [PF13912.8, score=26.2]; zinc-finger C2H2-type [PF16622.7, score=25.7]; SprT-like zinc ribbon domain [PF17283.4, score=23.1]; Zinc finger C2H2-type, 3 repeats [PF18868.3, score=21.3]; Ubiquitin-Binding Zinc Finger [PF18439.3, score=19.6]} {Human: ENSG00000196081, ZNF724, zinc finger protein 724, [Score=231, Expect=3e-70]; ENSG00000105750, ZNF85, zinc finger protein 85, [Score=230, Expect=5e-71]; ENSG00000278091, ZNF85, zinc finger protein 85, [Score=230, Expect=7e-71]; ENSG00000196350, ZNF729, zinc finger protein 729, [Score=229, Expect=3e-67]; ENSG00000182141, ZNF708, zinc finger protein 708, [Score=226, Expect=7e-69]; ENSG00000213973, ZNF99, zinc finger protein 99, [Score=226, Expect=5e-67]; ENSG00000197497, ZNF665, zinc finger protein 665, [Score=225, Expect=3e-68]; ENSG00000234284, ZNF879, zinc finger protein 879, [Score=224, Expect=3e-68]; ENSG00000198538, ZNF28, zinc finger protein 28, [Score=224, Expect=1e-67]; ENSG00000197013, ZNF429, zinc finger protein 429, [Score=222, Expect=1e-66]; ENSG00000146757, ZNF92, zinc finger protein 92, [Score=222, Expect=6e-68]; ENSG00000213967, ZNF726, zinc finger protein 726, [Score=221, Expect=1e-66]; ENSG00000251247, ZNF345, zinc finger protein 345, [Score=221, Expect=6e-68]; ENSG00000170949, ZNF160, zinc finger protein 160, [Score=221, Expect=4e-65]; ENSG00000160321, ZNF208, zinc finger protein 208, [Score=221, Expect=2e-64]; ENSG00000188283, ZNF383, zinc finger protein 383, [Score=220, Expect=1e-67]; ENSG00000176371, ZSCAN2, zinc finger and SCAN domain containing 2, [Score=220, Expect=2e-66]; ENSG00000275050, ZNF66, zinc finger protein 66, [Score=220, Expect=2e-66]; ENSG00000196172, ZNF681, zinc finger protein 681, [Score=220, Expect=3e-66]; ENSG00000279566, ZNF43, zinc finger protein 43, [Score=220, Expect=9e-68]; ENSG00000197937, ZNF347, zinc finger protein 347, [Score=220, Expect=5e-65]} {Mouse: ENSMUSG00000069184, Zfp72, zinc finger protein 72, [Score=229, Expect=1e-71]; ENSMUSG00000067942, Zfp160, zinc finger protein 160, [Score=224, Expect=1e-67]; ENSMUSG00000038797, Zscan2, zinc finger and SCAN domain containing 2, [Score=221, Expect=1e-66]; ENSMUSG00000045519, Zfp560, zinc finger protein 560, [Score=219, Expect=3e-65]; ENSMUSG00000044296, Zfp879, zinc finger protein 879, [Score=219, Expect=1e-66]} {Dmel: FBgn0038047, CG5245, [Score=178, Expect=1e-51]} {Celegans: WBGene00012639, fezf-1, FEZ Family zinc finger protein, [Score=139, Expect=7e-40]} {Smed: dd_Smed_v6_26394_0_1, dd_Smed_v6_26394_0_1, [Score=136, Expect=2e-38]} {RNA1509_46895} {RNA1310_27881} {RNA815_13892}
3. MligTC455_18166 281 5.85 Mlig455_066938

Neo: Int S/G2/M

Age: Down-Down-Up

 CUEDC2 0.957 0.957 - - - - - Mlig455_066938 {REF} {Length: 2129} {TRANSSPLICED} {Human: ENSG00000107874, CUEDC2, CUE domain containing 2, [RH, Score=85.1, Expect=2e-18]} {Mouse: ENSMUSG00000036748, Cuedc2, CUE domain containing 2, [RH, Score=81.3, Expect=3e-17]} {RNA1509_27699, RNA1509_48387} {RNA1310_20074, RNA1509_27699, RNA1509_48387} {RNA1509_27699, RNA1509_48387, RNA815_20790}
4. MligTC455_33101 89 1.85 Mlig455_064071, Mlig455_064992

Neo: -

Age: -

 0.952 - - - 0.952 - -

Mlig455_064071 {REF} {Length: 3613} {RNA1509_56890} {RNA1310_43571.1} {RNA815_52616}

Mlig455_064992 {REF} {Length: 2928} {NoTransDecoderORF} {RNA1509_56890} {RNA1310_43571.1} {RNA815_52616}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA