Data search


search
Exact
Search

Results for MligTC455_51266

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_51266 2459 51.22 Mlig455_048385, Mlig455_049087

Neo: -

Age: -

Region-enriched R7: 1.882/0.00099

RAB3C

Mlig455_048385 {REF} {Length: 3166} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=207.7]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.7]; ADP-ribosylation factor family [PF00025.23, score=53.9]; Signal recognition particle receptor beta subunit [PF09439.12, score=21.9]; 50S ribosome-binding GTPase [PF01926.25, score=20.9]; Elongation factor Tu GTP binding domain [PF00009.29, score=20.3]; Ferrous iron transport protein B [PF02421.20, score=18.9]; RsgA GTPase [PF03193.18, score=18.9]} {Human: ENSG00000152932, RAB3C, RAB3C, member RAS oncogene family, [RH, Score=355, Expect=1e-125]; ENSG00000169213, RAB3B, RAB3B, member RAS oncogene family, [RH, Score=346, Expect=3e-122]; ENSG00000105649, RAB3A, RAB3A, member RAS oncogene family, [RH, Score=345, Expect=8e-122]; ENSG00000105514, RAB3D, RAB3D, member RAS oncogene family, [RH, Score=338, Expect=3e-119]} {Mouse: ENSMUSG00000021700, Rab3c, RAB3C, member RAS oncogene family, [RH, Score=352, Expect=1e-124]; ENSMUSG00000031840, Rab3a, RAB3A, member RAS oncogene family, [RH, Score=345, Expect=4e-122]; ENSMUSG00000111277, Rab3a, RAB3A, member RAS onco family, [RH, Score=345, Expect=4e-122]; ENSMUSG00000019066, Rab3d, RAB3D, member RAS oncogene family, [RH, Score=342, Expect=1e-120]; ENSMUSG00000003411, Rab3b, RAB3B, member RAS oncogene family, [RH, Score=341, Expect=2e-120]} {Dmel: FBgn0005586, Rab3, [RH, Score=359, Expect=1e-127]} {Celegans: WBGene00004267, rab-3, Ras-related protein Rab-3, [RH, Score=353, Expect=3e-125]} {Smed: dd_Smed_v6_5920_0_1, dd_Smed_v6_5920_0_1, [RH, Score=345, Expect=2e-122]} {RNA1509_11395} {RNA1310_25880} {RNA815_16450}

Mlig455_049087 {REF} {Length: 3460} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=207.7]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.7]; ADP-ribosylation factor family [PF00025.23, score=53.9]; Signal recognition particle receptor beta subunit [PF09439.12, score=21.9]; 50S ribosome-binding GTPase [PF01926.25, score=20.9]; Elongation factor Tu GTP binding domain [PF00009.29, score=20.3]; Ferrous iron transport protein B [PF02421.20, score=18.9]; RsgA GTPase [PF03193.18, score=18.9]} {Human: ENSG00000152932, RAB3C, RAB3C, member RAS oncogene family, [RH, Score=355, Expect=1e-125]; ENSG00000169213, RAB3B, RAB3B, member RAS oncogene family, [RH, Score=346, Expect=3e-122]; ENSG00000105649, RAB3A, RAB3A, member RAS oncogene family, [RH, Score=345, Expect=8e-122]; ENSG00000105514, RAB3D, RAB3D, member RAS oncogene family, [RH, Score=338, Expect=3e-119]} {Mouse: ENSMUSG00000021700, Rab3c, RAB3C, member RAS oncogene family, [RH, Score=352, Expect=1e-124]; ENSMUSG00000031840, Rab3a, RAB3A, member RAS oncogene family, [RH, Score=345, Expect=4e-122]; ENSMUSG00000111277, Rab3a, RAB3A, member RAS onco family, [RH, Score=345, Expect=4e-122]; ENSMUSG00000019066, Rab3d, RAB3D, member RAS oncogene family, [RH, Score=342, Expect=1e-120]; ENSMUSG00000003411, Rab3b, RAB3B, member RAS oncogene family, [RH, Score=341, Expect=2e-120]} {Dmel: FBgn0005586, Rab3, [RH, Score=359, Expect=1e-127]} {Celegans: WBGene00004267, rab-3, Ras-related protein Rab-3, [RH, Score=353, Expect=3e-125]} {Smed: dd_Smed_v6_5920_0_1, dd_Smed_v6_5920_0_1, [RH, Score=345, Expect=2e-122]} {RNA1509_11395} {RNA1310_25880, RNA1509_11395} {RNA1509_11395, RNA815_16450}

Cumulative graph for MligTC455_51266

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.704 5.781 0.05921 0.56020
RegionR2 0.307 5.781 0.58530 0.94021
RegionR3 -0.325 5.781 0.51993 1.00000
RegionR4 -0.888 5.781 0.13317 0.37037
RegionR5 -0.697 5.781 0.17162 0.44183
RegionR6 0.712 5.781 0.13052 0.65170
RegionR7 1.882 5.781 0.00001 0.00099
RegionR8 0.712 5.781 0.18221 0.76787

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.981 5.781 0.47628 1.00000
RegenerationR2 -0.14 5.781 0.81523 0.99440
RegenerationR3 0.431 5.781 0.48746 0.85361
RegenerationR4 0.32 5.781 0.61025 0.91743
RegenerationR5 0.594 5.781 0.32832 0.75078
RegenerationR6 -0.462 5.781 0.45111 0.77147
RegenerationBL -1.895 5.781 0.00160 0.03131
RegenerationTP -1.547 5.781 0.01272 0.19182


Genes with expression patterns similar to MligTC455_51266

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_51266 2459 51.22 Mlig455_048385, Mlig455_049087

Neo: -

Age: -

Region-enriched R7: 1.882/0.00099

RAB3C 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_048385 {REF} {Length: 3166} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=207.7]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.7]; ADP-ribosylation factor family [PF00025.23, score=53.9]; Signal recognition particle receptor beta subunit [PF09439.12, score=21.9]; 50S ribosome-binding GTPase [PF01926.25, score=20.9]; Elongation factor Tu GTP binding domain [PF00009.29, score=20.3]; Ferrous iron transport protein B [PF02421.20, score=18.9]; RsgA GTPase [PF03193.18, score=18.9]} {Human: ENSG00000152932, RAB3C, RAB3C, member RAS oncogene family, [RH, Score=355, Expect=1e-125]; ENSG00000169213, RAB3B, RAB3B, member RAS oncogene family, [RH, Score=346, Expect=3e-122]; ENSG00000105649, RAB3A, RAB3A, member RAS oncogene family, [RH, Score=345, Expect=8e-122]; ENSG00000105514, RAB3D, RAB3D, member RAS oncogene family, [RH, Score=338, Expect=3e-119]} {Mouse: ENSMUSG00000021700, Rab3c, RAB3C, member RAS oncogene family, [RH, Score=352, Expect=1e-124]; ENSMUSG00000031840, Rab3a, RAB3A, member RAS oncogene family, [RH, Score=345, Expect=4e-122]; ENSMUSG00000111277, Rab3a, RAB3A, member RAS onco family, [RH, Score=345, Expect=4e-122]; ENSMUSG00000019066, Rab3d, RAB3D, member RAS oncogene family, [RH, Score=342, Expect=1e-120]; ENSMUSG00000003411, Rab3b, RAB3B, member RAS oncogene family, [RH, Score=341, Expect=2e-120]} {Dmel: FBgn0005586, Rab3, [RH, Score=359, Expect=1e-127]} {Celegans: WBGene00004267, rab-3, Ras-related protein Rab-3, [RH, Score=353, Expect=3e-125]} {Smed: dd_Smed_v6_5920_0_1, dd_Smed_v6_5920_0_1, [RH, Score=345, Expect=2e-122]} {RNA1509_11395} {RNA1310_25880} {RNA815_16450}

Mlig455_049087 {REF} {Length: 3460} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=207.7]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.7]; ADP-ribosylation factor family [PF00025.23, score=53.9]; Signal recognition particle receptor beta subunit [PF09439.12, score=21.9]; 50S ribosome-binding GTPase [PF01926.25, score=20.9]; Elongation factor Tu GTP binding domain [PF00009.29, score=20.3]; Ferrous iron transport protein B [PF02421.20, score=18.9]; RsgA GTPase [PF03193.18, score=18.9]} {Human: ENSG00000152932, RAB3C, RAB3C, member RAS oncogene family, [RH, Score=355, Expect=1e-125]; ENSG00000169213, RAB3B, RAB3B, member RAS oncogene family, [RH, Score=346, Expect=3e-122]; ENSG00000105649, RAB3A, RAB3A, member RAS oncogene family, [RH, Score=345, Expect=8e-122]; ENSG00000105514, RAB3D, RAB3D, member RAS oncogene family, [RH, Score=338, Expect=3e-119]} {Mouse: ENSMUSG00000021700, Rab3c, RAB3C, member RAS oncogene family, [RH, Score=352, Expect=1e-124]; ENSMUSG00000031840, Rab3a, RAB3A, member RAS oncogene family, [RH, Score=345, Expect=4e-122]; ENSMUSG00000111277, Rab3a, RAB3A, member RAS onco family, [RH, Score=345, Expect=4e-122]; ENSMUSG00000019066, Rab3d, RAB3D, member RAS oncogene family, [RH, Score=342, Expect=1e-120]; ENSMUSG00000003411, Rab3b, RAB3B, member RAS oncogene family, [RH, Score=341, Expect=2e-120]} {Dmel: FBgn0005586, Rab3, [RH, Score=359, Expect=1e-127]} {Celegans: WBGene00004267, rab-3, Ras-related protein Rab-3, [RH, Score=353, Expect=3e-125]} {Smed: dd_Smed_v6_5920_0_1, dd_Smed_v6_5920_0_1, [RH, Score=345, Expect=2e-122]} {RNA1509_11395} {RNA1310_25880, RNA1509_11395} {RNA1509_11395, RNA815_16450}
2. MligTC455_44952 726 15.13 Mlig455_011161

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.494

Region-enriched R5: 1.481/0.00145

0.96 - - - 0.960 - - Mlig455_011161 {REF} {Length: 3053} {Celegans: WBGene00015646, mlt-10, [Score=172, Expect=4e-46]} {RNA1509_57962} {RNA1310_14000} {RNA815_26889}
3. MligTC455_17267 266 5.55 Mlig455_017106

Neo: -

Age: logFC(26M/2M)=-0.337

OTOP2 0.959 - - - - 0.959 - Mlig455_017106 {REF} {Length: 3746} {Pfam: Otopetrin [PF03189.15, score=249.6]} {Human: ENSG00000183034, OTOP2, otopetrin 2, [Score=58.9, Expect=2e-08]} {Mouse: ENSMUSG00000050201, Otop2, otopetrin 2, [Score=68.2, Expect=2e-11]} {Dmel: FBgn0259150, CG42265, [Score=181, Expect=4e-47]} {Celegans: WBGene00017449, otpl-3, OToPetrin-Like, [Score=114, Expect=2e-26]} {Smed: dd_Smed_v6_13612_0_2, dd_Smed_v6_13612_0_2, [RH, Score=297, Expect=2e-91]} {RNA1509_17427} {RNA1310_8650, RNA1509_17427} {RNA1509_17427, RNA815_9942}
4. MligTC455_17256 2285 47.61 Mlig455_013837, Mlig455_059934

Neo: -

Age: logFC(26M/2M)=0.367

0.957 - - - - 0.957 -

Mlig455_013837 {REF} {Length: 4041} {TRANSSPLICED} {Pfam: MAM domain, meprin/A5/mu [PF00629.25, score=51.2]} {Smed: dd_Smed_v6_1725_0_1, dd_Smed_v6_1725_0_1, [Score=105, Expect=1e-23]} {RNA1509_12221} {RNA1310_15564} {RNA815_6145}

Mlig455_059934 {REF} {Length: 3197} {Pfam: Family of unknown function (DUF6479) [PF20087.1, score=22.6]} {Smed: dd_Smed_v6_1725_0_1, dd_Smed_v6_1725_0_1, [Score=78.6, Expect=6e-17]} {RNA1509_12221} {RNA1310_15564} {RNA815_6145}
5. MligTC455_46339 7256 151.17 Mlig455_009786, Mlig455_010384

Neo: -

Age: -

Region-enriched R2: 1.545/0.00135
Region-enriched R7: 1.288/0.00228

Regeneration-downregulated BL: -1.841

Regeneration-depleted BL: -1.841

0.952 - - - 0.952 - -

Mlig455_009786 {REF} {Length: 611} {Pfam: Pancreatic hormone peptide [PF00159.20, score=38.5]} {RNA1509_49591} {RNA1310_59752} {RNA815_30325}

Mlig455_010384 {REF} {Length: 611} {Pfam: Pancreatic hormone peptide [PF00159.20, score=38.5]} {RNA1509_49591} {RNA1310_59752} {RNA815_30325}
6. MligTC455_47696 1742 36.29 Mlig455_050774

Neo: -

Age: -

SRRM1 0.951 - - - - 0.951 - Mlig455_050774 {REF} {Length: 3623} {Pfam: PWI domain [PF01480.19, score=80.7]} {Human: ENSG00000133226, SRRM1, serine and arginine repetitive matrix 1, [RH, Score=182, Expect=2e-47]} {Mouse: ENSMUSG00000028809, Srrm1, serine/arginine repetitive matrix 1, [RH, Score=183, Expect=7e-48]} {Dmel: FBgn0036340, SRm160, [RH, Score=168, Expect=4e-43]} {Celegans: WBGene00004706, rsr-1, SR protein related, [RH, Score=159, Expect=6e-41]} {Smed: dd_Smed_v6_3886_0_1, dd_Smed_v6_3886_0_1, [Score=169, Expect=9e-44]} {RNA1509_47406, RNA1509_48534} {RNA1310_944, RNA1509_47406} {RNA1509_47406, RNA815_383.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA