TomoSeq data search

Data search

Results for MligTC455_51646

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_51646	21	0.44	Mlig455_015639, Mlig455_066292	Neo: - Age: Up-Down-Down Region-enriched R2: 9.972/0.00174	NYNRIN	Mlig455_015639 {REF} {Length: 2303} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=41.0]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=81.6, Expect=2e-19]} {RNA1310_4200} {RNA815_22448} Mlig455_066292 {REF} {Length: 2895} {TRANSSPLICED} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=112.0]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=109.9]; Integrase zinc binding domain [PF17921.3, score=71.7]; Integrase core domain [PF00665.28, score=51.4]; Integrase core domain [PF13683.8, score=28.4]; H2C2 zinc finger [PF09337.12, score=22.6]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=60.1, Expect=9e-09]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=62.8, Expect=1e-09]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=139, Expect=3e-34]} {RNA1310_4200} {RNA815_22448}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_51646

0.44

Mlig455_015639, Mlig455_066292

Neo: -

Age: Up-Down-Down

Region-enriched R2: 9.972/0.00174

NYNRIN

Mlig455_015639 {REF} {Length: 2303} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=41.0]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=81.6, Expect=2e-19]} {RNA1310_4200} {RNA815_22448}

Mlig455_066292 {REF} {Length: 2895} {TRANSSPLICED} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=112.0]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=109.9]; Integrase zinc binding domain [PF17921.3, score=71.7]; Integrase core domain [PF00665.28, score=51.4]; Integrase core domain [PF13683.8, score=28.4]; H2C2 zinc finger [PF09337.12, score=22.6]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=60.1, Expect=9e-09]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=62.8, Expect=1e-09]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=139, Expect=3e-34]} {RNA1310_4200} {RNA815_22448}

Cumulative graph for MligTC455_51646

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-13.043	0.965	0.99956	1.00000
RegionR2	9.972	0.965	0.00003	0.00174
RegionR3	5.642	0.965	0.00250	0.05864
RegionR4	-2.157	0.965	0.96309	1.00000
RegionR5	-0.976	0.965	0.99969	1.00000
RegionR6	1.242	0.965	0.99976	1.00000
RegionR7	-0.327	0.965	0.99974	1.00000
RegionR8	-0.353	0.965	0.99973	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	11.472	0.965	0.99987	1.00000
RegenerationR2	1.967	0.965	0.06194	0.40833
RegenerationR3	3.869	0.965	0.00688	0.15132
RegenerationR4	5.373	0.965	0.00129	0.04192
RegenerationR5	5.516	0.965	0.00153	0.06752
RegenerationR6	3.943	0.965	1.00000	1.00000
RegenerationBL	3.809	0.965	0.99995	1.00000
RegenerationTP	6.913	0.965	0.02228	0.25426

Genes with expression patterns similar to MligTC455_51646

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_51646	21	0.44	Mlig455_015639, Mlig455_066292	Neo: - Age: Up-Down-Down Region-enriched R2: 9.972/0.00174	NYNRIN	3	-	1.000	-	-	1.000	1.000	Mlig455_015639 {REF} {Length: 2303} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=41.0]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=81.6, Expect=2e-19]} {RNA1310_4200} {RNA815_22448} Mlig455_066292 {REF} {Length: 2895} {TRANSSPLICED} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=112.0]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=109.9]; Integrase zinc binding domain [PF17921.3, score=71.7]; Integrase core domain [PF00665.28, score=51.4]; Integrase core domain [PF13683.8, score=28.4]; H2C2 zinc finger [PF09337.12, score=22.6]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=60.1, Expect=9e-09]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=62.8, Expect=1e-09]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=139, Expect=3e-34]} {RNA1310_4200} {RNA815_22448}
2.	MligTC455_30052	18	0.38	Mlig455_034711	Neo: - Age: Up-Down-Down Region-enriched R2: 7.452/0.01054		1.875	-	0.914	-	-	-	0.961	Mlig455_034711 {REF} {Length: 3673} {Smed: dd_Smed_v6_7411_0_1, dd_Smed_v6_7411_0_1, [RH, Score=48.9, Expect=2e-06]} {RNA1509_14295} {RNA1310_1396.1} {RNA815_549.1}
3.	MligTC455_40631	38	0.8	Mlig455_033576	Neo: - Age: -		0.974	-	-	-	-	0.974	-	Mlig455_033576 {REF} {Length: 1964} {RNA1509_57122} {RNA1310_32260} {RNA815_19996}
4.	MligTC455_54065	14	0.29	Mlig455_027917	Neo: - Age: -		0.974	-	-	-	-	-	0.974	Mlig455_027917 {REF} {Length: 834} {RNA1509_53588} {RNA1310_52278} {RNA815_41341}
5.	MligTC455_20749	173	3.61	Mlig455_062666	Neo: Irradiation Age: Up-Down-Up		0.972	-	-	-	-	-	0.972	Mlig455_062666 {REF} {Length: 3946} {TRANSSPLICED} {RNA1509_8660} {RNA1310_14747} {RNA815_10812.2}
6.	MligTC455_10119	6	0.12	Mlig455_070971	Neo: - Age: -		0.959	-	-	-	-	-	0.959	Mlig455_070971 {REF} {Length: 862} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_26728}
7.	MligTC455_14954	32	0.66	Mlig455_051468, Mlig455_066698	Neo: - Age: -		0.952	-	-	-	-	0.952	-	Mlig455_051468 {REF} {Length: 741} {NoTransDecoderORF} Mlig455_066698 {REF} {Length: 2055} {Smed: dd_Smed_v6_5882_0_1, dd_Smed_v6_5882_0_1, [Score=41.2, Expect=1e-05]} {RNA1509_10844} {RNA1310_32662} {RNA815_30370}