TomoSeq data search

Data search

Results for MligTC455_51742

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_51742	226	4.71	Mlig455_028329, Mlig455_066157	Neo: - Age: -		Mlig455_028329 {REF} {Length: 2233} {RNA1509_24668} {RNA1310_11745} {RNA815_6094} Mlig455_066157 {REF} {Length: 2231} {RNA1509_24668} {RNA1310_11745} {RNA815_6094}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_51742

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	0.994	2.452	0.46906	1.00000
RegionR2	0.044	2.452	0.76201	1.00000
RegionR3	0.817	2.452	0.31383	0.85312
RegionR4	1.738	2.452	0.03927	0.16345
RegionR5	-0.715	2.452	0.96842	1.00000
RegionR6	1.531	2.452	0.06292	0.47014
RegionR7	1.457	2.452	0.10995	0.62878
RegionR8	-5.866	2.452	0.04467	0.41407

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-7.524	2.452	0.05507	0.71346
RegenerationR2	-1.011	2.452	0.10758	0.51423
RegenerationR3	-0.508	2.452	0.47220	0.84557
RegenerationR4	-0.225	2.452	0.76823	0.97613
RegenerationR5	1.184	2.452	0.12738	0.53166
RegenerationR6	-0.411	2.452	0.53834	0.83200
RegenerationBL	-0.853	2.452	0.91042	1.00000
RegenerationTP	-0.213	2.452	0.81612	1.00000

Genes with expression patterns similar to MligTC455_51742

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_51742	226	4.71	Mlig455_028329, Mlig455_066157	Neo: - Age: -		5	-	1.000	1.000	1.000	1.000	1.000	Mlig455_028329 {REF} {Length: 2233} {RNA1509_24668} {RNA1310_11745} {RNA815_6094} Mlig455_066157 {REF} {Length: 2231} {RNA1509_24668} {RNA1310_11745} {RNA815_6094}
2.	MligTC455_40788	442	9.2	Mlig455_048951	Neo: - Age: -	SUZ12	1.785	-	-	0.979	0.806	-	-	Mlig455_048951 {REF} {Length: 2627} {TRANSSPLICED} {Pfam: VEFS-Box of polycomb protein [PF09733.11, score=116.0]} {Human: ENSG00000178691, SUZ12, SUZ12, polycomb repressive complex 2 subunit, [RH, Score=250, Expect=2e-72]} {Mouse: ENSMUSG00000017548, Suz12, SUZ12 polycomb repressive complex 2 subunit, [RH, Score=253, Expect=1e-73]} {Dmel: FBgn0020887, Su(z)12, [RH, Score=187, Expect=1e-49]} {Smed: dd_Smed_v6_12930_0_1, dd_Smed_v6_12930_0_1, [RH, Score=193, Expect=3e-53]} {RNA1509_42645} {RNA1310_6938, RNA1509_42645} {RNA1509_42645, RNA815_5348}
3.	MligTC455_21866	687	14.31	Mlig455_019362	Neo: Irradiation Age: -	FOS	1.766	-	-	0.958	0.808	-	-	Mlig455_019362 {REF} {Length: 6528} {Pfam: bZIP transcription factor [PF00170.23, score=45.7]; Basic region leucine zipper [PF07716.17, score=29.3]; bZIP Maf transcription factor [PF03131.19, score=23.8]} {Human: ENSG00000170345, FOS, Fos proto-oncogene, AP-1 transcription factor subunit, [RH, Score=60.5, Expect=3e-09]} {Mouse: ENSMUSG00000026628, Atf3, activating transcription factor 3, [Score=60.8, Expect=3e-10]} {Dmel: FBgn0001297, kay, kayak, [RH, Score=74.3, Expect=1e-13]} {Celegans: WBGene00001345, fos-1, Transcription factor fos-1, [Score=57.0, Expect=2e-08]} {Smed: dd_Smed_v6_8835_0_1, dd_Smed_v6_8835_0_1, [RH, Score=53.5, Expect=1e-07]} {RNA1509_24169, RNA1509_30950, RNA1509_34345, RNA1509_35596} {RNA1310_17929.1, RNA1509_24169, RNA1509_30950, RNA1509_34345, RNA1509_35596} {RNA1509_24169, RNA1509_30950, RNA1509_34345, RNA1509_35596, RNA815_15089}
4.	MligTC455_29541	402	8.37	Mlig455_063794	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.426		1.719	-	-	0.978	0.741	-	-	Mlig455_063794 {REF} {Length: 3462} {TRANSSPLICED} {RNA1310_21809} {RNA815_37693}
5.	MligTC455_42485	159	3.31	Mlig455_046457	Neo: - Age: -		0.984	-	-	0.984	-	-	-	Mlig455_046457 {REF} {Length: 846} {RNA1310_40237.1} {RNA815_18246}
6.	MligTC455_28350	662	13.79	Mlig455_067530	Neo: - Age: Down-Up-Down	RCCD1	0.98	-	-	0.980	-	-	-	Mlig455_067530 {REF} {Length: 2354} {TRANSSPLICED} {Pfam: Regulator of chromosome condensation (RCC1) repeat [PF00415.20, score=87.0]; Regulator of chromosome condensation (RCC1) repeat [PF13540.8, score=53.3]} {Human: ENSG00000166965, RCCD1, RCC1 domain containing 1, [RH, Score=97.8, Expect=2e-22]} {Mouse: ENSMUSG00000038930, Rccd1, RCC1 domain containing 1, [RH, Score=98.6, Expect=1e-22]} {Dmel: FBgn0038917, CG6678, [RH, Score=86.7, Expect=9e-19]} {Celegans: WBGene00010768, K11D2.1, [RH, Score=76.6, Expect=4e-16]} {Smed: dd_Smed_v6_4912_0_1, dd_Smed_v6_4912_0_1, [RH, Score=96.3, Expect=2e-22]} {RNA1509_26302} {RNA1310_19707, RNA1509_26302} {RNA1509_26302, RNA815_10526}
7.	MligTC455_31935	299	6.24	Mlig455_046201	Neo: - Age: - Region-enriched R1: 6.310/0.00233		0.978	-	-	0.978	-	-	-	Mlig455_046201 {REF} {Length: 1782} {Pfam: RICH domain [PF05062.14, score=19.2]} {RNA1509_2515} {RNA1310_26891} {RNA815_3258.1}
8.	MligTC455_49022	378	7.87	Mlig455_008757	Neo: - Age: -		0.978	-	-	0.978	-	-	-	Mlig455_008757 {REF} {Length: 1456} {Pfam: Low-density lipoprotein receptor domain class A [PF00057.20, score=24.1]; Lipopolysaccharide assembly protein A domain [PF06305.13, score=19.0]} {Smed: dd_Smed_v6_2114_0_1, dd_Smed_v6_2114_0_1, [RH, Score=130, Expect=5e-36]} {RNA1509_42918} {RNA1310_17906} {RNA815_7308.1}
9.	MligTC455_27094	393	8.19	Mlig455_066757	Neo: Irradiation Age: Up-Down-Down		0.972	-	-	0.972	-	-	-	Mlig455_066757 {REF} {Length: 3641} {TRANSSPLICED} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=119.4]} {RNA1509_6501} {RNA1310_3605.1} {RNA815_26244}
10.	MligTC455_32855	446	9.3	Mlig455_048275	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.583	IFIH1	0.972	-	-	0.972	-	-	-	Mlig455_048275 {REF} {Length: 3726} {Pfam: Type III restriction enzyme, res subunit [PF04851.17, score=68.4]; DEAD/DEAH box helicase [PF00270.31, score=62.9]; Helicase conserved C-terminal domain [PF00271.33, score=55.0]; C-terminal domain of RIG-I [PF11648.10, score=39.4]; RIG-I receptor C-terminal domain [PF18119.3, score=32.1]; AAA domain [PF13245.8, score=31.1]; SWI2/SNF2 ATPase [PF18766.3, score=24.3]; UvrD/REP helicase N-terminal domain [PF00580.23, score=19.9]; PhoH-like protein [PF02562.18, score=18.1]} {Human: ENSG00000115267, IFIH1, interferon induced with helicase C domain 1, [RH, Score=259, Expect=9e-72]; ENSG00000108771, DHX58, DExH-box helicase 58, [RH, Score=256, Expect=7e-73]} {Mouse: ENSMUSG00000017830, Dhx58, DEXH (Asp-Glu-X-His) box polypeptide 58, [RH, Score=240, Expect=2e-67]} {Dmel: FBgn0039016, Dcr-1, Dicer-1, [Score=65.5, Expect=3e-10]} {Celegans: WBGene00001090, drh-1, Dicer Related Helicase; Dicer-related helicase, [Score=192, Expect=8e-51]} {Smed: dd_Smed_v6_3742_0_2, dd_Smed_v6_3742_0_2, [Score=324, Expect=7e-94]} {RNA1509_4585} {RNA1310_1259, RNA1509_4585} {RNA1509_4585, RNA815_1036}
11.	MligTC455_42412	539	11.22	Mlig455_009847	Neo: - Age: -	RAB21	0.966	-	-	0.966	-	-	-	Mlig455_009847 {REF} {Length: 2226} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=178.3]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=119.9]; ADP-ribosylation factor family [PF00025.23, score=45.4]; Elongation factor Tu GTP binding domain [PF00009.29, score=19.4]} {Human: ENSG00000080371, RAB21, RAB21, member RAS oncogene family, [RH, Score=265, Expect=6e-90]} {Mouse: ENSMUSG00000020132, Rab21, RAB21, member RAS oncogene family, [RH, Score=266, Expect=8e-91]} {Dmel: FBgn0039966, Rab21, [Score=213, Expect=7e-70]} {Celegans: WBGene00004279, rab-21, RAB family, [RH, Score=200, Expect=5e-65]} {Smed: dd_Smed_v6_1863_0_1, dd_Smed_v6_1863_0_1, [Score=209, Expect=6e-69]} {RNA1509_29028, RNA1509_33419, RNA1509_41909} {RNA1310_17759, RNA1509_29028, RNA1509_33419, RNA1509_41909} {RNA1509_29028, RNA1509_33419, RNA1509_41909, RNA815_10475.1}
12.	MligTC455_20318	572	11.91	Mlig455_025879	Neo: - Age: logFC(26M/2M)=-0.315	CSPP1	0.965	-	-	0.965	-	-	-	Mlig455_025879 {REF} {Length: 6491} {TRANSSPLICED} {Human: ENSG00000104218, CSPP1, centrosome and spindle pole associated protein 1, [RH, Score=148, Expect=2e-35]} {Mouse: ENSMUSG00000056763, Cspp1, centrosome and spindle pole associated protein 1, [RH, Score=149, Expect=6e-36]} {Smed: dd_Smed_v6_13453_0_1, dd_Smed_v6_13453_0_1, [RH, Score=145, Expect=5e-35]} {RNA1509_36070, RNA1509_37407, RNA1509_4731, RNA1509_50746} {RNA1310_5083.1, RNA1509_36070, RNA1509_37407, RNA1509_50746} {RNA1509_36070, RNA1509_37407, RNA1509_50746, RNA815_9871}
13.	MligTC455_35649	2184	45.51	Mlig455_044470	Neo: - Age: logFC(26M/2M)=0.397	CALR	0.965	-	-	0.965	-	-	-	Mlig455_044470 {REF} {Length: 2189} {Pfam: Calreticulin family [PF00262.20, score=125.5]} {Human: ENSG00000179218, CALR, calreticulin, [Score=210, Expect=7e-66]} {Mouse: ENSMUSG00000003814, Calr, calreticulin, [Score=211, Expect=1e-66]} {Dmel: FBgn0005585, Calr, Calreticulin, [Score=196, Expect=4e-61]} {Celegans: WBGene00000802, crt-1, Calreticulin, [Score=225, Expect=1e-72]} {Smed: dd_Smed_v6_220_0_3, dd_Smed_v6_220_0_3, [Score=222, Expect=3e-71]} {RNA1509_145} {RNA1310_7869} {RNA815_3522.1}
14.	MligTC455_51137	1192	24.84	Mlig455_011449, Mlig455_061187	Neo: - Age: -	SDF2	0.962	-	-	0.962	-	-	-	Mlig455_011449 {REF} {Length: 2429} {Pfam: MIR domain [PF02815.21, score=53.7]} {Human: ENSG00000132581, SDF2, stromal cell derived factor 2, [Score=214, Expect=1e-69]} {Mouse: ENSMUSG00000002064, Sdf2, stromal cell derived factor 2, [Score=214, Expect=2e-69]} {Dmel: FBgn0037312, CG11999, [Score=197, Expect=4e-63]} {Celegans: WBGene00020038, R12E2.13, [RH, Score=188, Expect=6e-60]} {Smed: dd_Smed_v6_1307_0_1, dd_Smed_v6_1307_0_1, [RH, Score=224, Expect=1e-73]} {RNA1509_21861} {RNA1310_32180} {RNA815_37499} Mlig455_061187 {REF} {Length: 2509} {Pfam: MIR domain [PF02815.21, score=53.7]} {Human: ENSG00000132581, SDF2, stromal cell derived factor 2, [Score=214, Expect=1e-69]} {Mouse: ENSMUSG00000002064, Sdf2, stromal cell derived factor 2, [Score=214, Expect=2e-69]} {Dmel: FBgn0037312, CG11999, [Score=197, Expect=3e-63]} {Celegans: WBGene00020038, R12E2.13, [RH, Score=188, Expect=6e-60]} {Smed: dd_Smed_v6_1307_0_1, dd_Smed_v6_1307_0_1, [RH, Score=224, Expect=1e-73]} {RNA1509_21861} {RNA1310_32180} {RNA815_37499}
15.	MligTC455_09236	361	7.53	Mlig455_069872	Neo: - Age: -		0.961	-	-	0.961	-	-	-	Mlig455_069872 {REF} {Length: 971} {NoTransDecoderORF} {RNA1509_56890} {RNA1310_8409.1} {RNA815_29944}
16.	MligTC455_12534	1611	33.55	Mlig455_046860	Neo: Int S/G2/M Age: -	NOP53	0.961	-	-	0.961	-	-	-	Mlig455_046860 {REF} {Length: 1829} {TRANSSPLICED} {Pfam: Nop53 (60S ribosomal biogenesis) [PF07767.13, score=161.6]} {Human: ENSG00000105373, NOP53, NOP53 ribosome biogenesis factor, [RH, Score=121, Expect=2e-29]} {Mouse: ENSMUSG00000041560, Nop53, NOP53 ribosome biogenesis factor, [RH, Score=117, Expect=2e-28]} {Dmel: FBgn0030061, CG1785, [RH, Score=82.4, Expect=1e-16]} {Celegans: WBGene00012692, Y39B6A.33, [RH, Score=53.9, Expect=1e-07]} {RNA1509_22656, RNA1509_4085} {RNA1310_16335, RNA1509_22656, RNA1509_4085} {RNA1509_22656, RNA1509_4085, RNA815_6216}
17.	MligTC455_21460	847	17.64	Mlig455_021846, Mlig455_021921	Neo: - Age: - Region-enriched R4: 1.235/0.03768	ZFYVE9	0.961	-	-	0.961	-	-	-	Mlig455_021846 {REF} {Length: 3793} {Pfam: Domain of unknown function (DUF3480) [PF11979.10, score=267.7]} {Human: ENSG00000157077, ZFYVE9, zinc finger FYVE-type containing 9, [RH, Score=254, Expect=1e-73]} {Mouse: ENSMUSG00000034557, Zfyve9, zinc finger, FYVE domain containing 9, [RH, Score=256, Expect=7e-77]} {Dmel: FBgn0026369, Sara, Smad anchor for receptor activation, [RH, Score=220, Expect=6e-62]} {Smed: dd_Smed_v6_8098_0_1, dd_Smed_v6_8098_0_1, [Score=150, Expect=8e-39]} {RNA1509_12084} {RNA1310_4252} {RNA815_14369} Mlig455_021921 {REF} {Length: 5981} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF3480) [PF11979.10, score=264.5]; FYVE zinc finger [PF01363.23, score=68.9]} {Human: ENSG00000157077, ZFYVE9, zinc finger FYVE-type containing 9, [RH, Score=357, Expect=4e-104]} {Mouse: ENSMUSG00000034557, Zfyve9, zinc finger, FYVE domain containing 9, [RH, Score=362, Expect=3e-106]} {Dmel: FBgn0026369, Sara, Smad anchor for receptor activation, [RH, Score=230, Expect=1e-61]} {Celegans: WBGene00000101, aka-1, A Kinase Anchor protein; A kinase anchor protein, [RH, Score=165, Expect=3e-41]} {Smed: dd_Smed_v6_8098_0_1, dd_Smed_v6_8098_0_1, [Score=243, Expect=1e-66]} {RNA1509_12084} {RNA1310_4252} {RNA815_12002}
18.	MligTC455_36358	787	16.41	Mlig455_024262	Neo: Int S/G2/M Age: -	PEX6	0.961	-	-	0.961	-	-	-	Mlig455_024262 {REF} {Length: 2032} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=176.5]; AAA ATPase domain [PF13191.8, score=40.9]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=38.8]; AAA domain [PF13401.8, score=34.4]; AAA domain (dynein-related subfamily) [PF07728.16, score=29.7]; TIP49 P-loop domain [PF06068.15, score=25.7]; AAA+ lid domain [PF17862.3, score=24.0]; AAA domain [PF13671.8, score=23.5]; RNA helicase [PF00910.24, score=23.3]; Threonylcarbamoyl adenosine biosynthesis protein TsaE [PF02367.19, score=22.8]; Rad17 P-loop domain [PF03215.17, score=21.4]; AAA domain (Cdc48 subfamily) [PF07724.16, score=19.5]; AAA domain [PF13238.8, score=19.3]; IstB-like ATP binding protein [PF01695.19, score=18.3]; Magnesium chelatase, subunit ChlI [PF01078.23, score=18.0]} {Human: ENSG00000124587, PEX6, peroxisomal biogenesis factor 6, [Score=278, Expect=8e-82]} {Mouse: ENSMUSG00000002763, Pex6, peroxisomal biogenesis factor 6, [Score=273, Expect=4e-80]} {Dmel: FBgn0033564, Pex6, Peroxin 6, [Score=256, Expect=2e-74]} {Celegans: WBGene00004195, prx-6, PEX6; PeRoXisome assembly factor; Pex6p homolog, [Score=233, Expect=2e-67]} {Smed: dd_Smed_v6_6906_0_1, dd_Smed_v6_6906_0_1, [RH, Score=203, Expect=1e-56]} {RNA1509_16683} {RNA1310_5166.1} {RNA815_11050}
19.	MligTC455_28295	471	9.82	Mlig455_034661	Neo: - Age: -		0.958	-	-	0.958	-	-	-	Mlig455_034661 {REF} {Length: 526} {RNA1310_61099} {RNA815_29618}
20.	MligTC455_29017	47593	991.52	Mlig455_023273	Neo: - Age: Down-Down-Up		0.958	-	-	0.958	-	-	-	Mlig455_023273 {REF} {Length: 3896} {RNA1509_17773} {RNA1310_10858} {RNA815_5446.1}
21.	MligTC455_44765	2184	45.5	Mlig455_037351	Neo: Int S/G2/M Age: -	ZFAND6	0.956	-	-	0.956	-	-	-	Mlig455_037351 {REF} {Length: 2645} {TRANSSPLICED} {Pfam: AN1-like Zinc finger [PF01428.18, score=39.0]; A20-like zinc finger [PF01754.18, score=30.5]} {Human: ENSG00000086666, ZFAND6, zinc finger AN1-type containing 6, [RH, Score=143, Expect=9e-42]} {Mouse: ENSMUSG00000030629, Zfand6, zinc finger, AN1-type domain 6, [RH, Score=146, Expect=8e-43]} {Dmel: FBgn0266410, CG45050, [Score=132, Expect=1e-37]} {Celegans: WBGene00009050, F22D6.2, [Score=112, Expect=1e-30]} {Smed: dd_Smed_v6_6909_0_1, dd_Smed_v6_6909_0_1, [Score=115, Expect=3e-31]} {RNA1509_18337} {RNA1310_9081.2} {RNA815_4488.1}
22.	MligTC455_42758	1058	22.04	Mlig455_003527, Mlig455_015536	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.687 Regeneration-downregulated BL: -8.367 Regeneration-depleted BL: -8.367	ANGPTL1	0.951	-	-	0.951	-	-	-	Mlig455_003527 {REF} {Length: 1416} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=123.1]} {Human: ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=114, Expect=1e-27]; ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=112, Expect=6e-27]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=115, Expect=3e-28]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=112, Expect=3e-27]; ENSMUSG00000026938, Fcna, ficolin A, [Score=110, Expect=3e-27]} {Dmel: FBgn0033312, CG8642, [Score=98.2, Expect=2e-22]} {Celegans: WBGene00020516, T15B7.1, [Score=68.2, Expect=1e-12]} {Smed: dd_Smed_v6_74244_0_1, dd_Smed_v6_74244_0_1, [Score=48.1, Expect=4e-07]} {RNA1509_24863} {RNA1310_24297.1} {RNA815_9254} Mlig455_015536 {REF} {Length: 1416} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=124.0]} {Human: ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=114, Expect=1e-27]; ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=112, Expect=5e-27]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=115, Expect=3e-28]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=112, Expect=2e-27]; ENSMUSG00000026938, Fcna, ficolin A, [Score=111, Expect=1e-27]} {Dmel: FBgn0033312, CG8642, [Score=98.6, Expect=1e-22]} {Celegans: WBGene00020516, T15B7.1, [Score=69.7, Expect=4e-13]} {Smed: dd_Smed_v6_74244_0_1, dd_Smed_v6_74244_0_1, [Score=48.1, Expect=4e-07]} {RNA1509_24863} {RNA1310_24297.1, RNA1509_24863} {RNA1509_24863, RNA815_9254}
23.	MligTC455_44250	119	2.48	Mlig455_017680, Mlig455_025702	Neo: - Age: - Region-enriched R4: 3.311/0.01850 Region-enriched R5: 2.298/0.04884 Regeneration-downregulated R4: -3.713 Regeneration-depleted R4: -3.713		0.95	-	-	0.950	-	-	-	Mlig455_017680 {REF} {Length: 779} {TRANSSPLICED} {Pfam: Zinc ribbon domain [PF09723.12, score=18.7]} {RNA1509_30177} {RNA1310_18791} {RNA815_10594.2} Mlig455_025702 {REF} {Length: 282} {NoTransDecoderORF}