M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_51852

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_51852 102 2.13 Mlig455_053998

Neo: -

Age: -

 Mlig455_053998 {REF} {Length: 2419} {Pfam: Major Facilitator Superfamily [PF07690.18, score=95.4]; MFS/sugar transport protein [PF13347.8, score=48.2]; PUCC protein [PF03209.17, score=37.6]; MFS_1 like family [PF12832.9, score=36.6]; Sugar (and other) transporter [PF00083.26, score=26.0]} {Smed: dd_Smed_v6_8550_0_1, dd_Smed_v6_8550_0_1, [RH, Score=453, Expect=7e-155]} {RNA1509_53540} {RNA1310_30811.1} {RNA815_24118}

Cumulative graph for MligTC455_51852

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 2.265 1.928 0.24315 0.88967
RegionR2 0.758 1.928 0.33671 0.72827
RegionR3 -1.04 1.928 0.23513 0.77670
RegionR4 1.9 1.928 0.01659 0.08906
RegionR5 -4.815 1.928 0.00000 0.00005
RegionR6 -3.686 1.928 0.00079 0.03281
RegionR7 1.559 1.928 0.08712 0.56738
RegionR8 3.06 1.928 0.00187 0.07181

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.985 1.928 0.16074 0.90383
RegenerationR2 -0.649 1.928 0.34479 0.77860
RegenerationR3 -0.924 1.928 0.31626 0.74569
RegenerationR4 -2.348 1.928 0.00227 0.06074
RegenerationR5 0.057 1.928 0.91253 1.00000
RegenerationR6 0.748 1.928 0.60304 0.87007
RegenerationBL -6.004 1.928 0.00974 0.09919
RegenerationTP -2.963 1.928 0.00737 0.14431


Genes with expression patterns similar to MligTC455_51852

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_51852 102 2.13 Mlig455_053998

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_053998 {REF} {Length: 2419} {Pfam: Major Facilitator Superfamily [PF07690.18, score=95.4]; MFS/sugar transport protein [PF13347.8, score=48.2]; PUCC protein [PF03209.17, score=37.6]; MFS_1 like family [PF12832.9, score=36.6]; Sugar (and other) transporter [PF00083.26, score=26.0]} {Smed: dd_Smed_v6_8550_0_1, dd_Smed_v6_8550_0_1, [RH, Score=453, Expect=7e-155]} {RNA1509_53540} {RNA1310_30811.1} {RNA815_24118}
2. MligTC455_17806 20 0.42 Mlig455_044877

Neo: -

Age: -

 1.795 - - - 0.960 0.835 - Mlig455_044877 {REF} {Length: 1723} {Pfam: F5/8 type C domain [PF00754.27, score=29.9]} {Smed: dd_Smed_v6_83746_0_1, dd_Smed_v6_83746_0_1, [RH, Score=67.8, Expect=2e-14]} {RNA1310_72359} {RNA815_40265}
3. MligTC455_12087 94 1.97 Mlig455_028142, Mlig455_063570

Neo: -

Age: Down-Down-Down

 SNAI2 1.758 - 0.797 - 0.961 - -

Mlig455_028142 {REF} {Length: 1403} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=70.9]; Zinc-finger double domain [PF13465.8, score=59.7]; C2H2-type zinc finger [PF13894.8, score=55.9]; C2H2-type zinc finger [PF13912.8, score=40.9]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=31.5]; Zinc-finger of C2H2 type [PF12874.9, score=30.3]; C2HE / C2H2 / C2HC zinc-binding finger [PF16278.7, score=27.5]} {Human: ENSG00000019549, SNAI2, snail family transcriptional repressor 2, [Score=182, Expect=4e-57]; ENSG00000185669, SNAI3, snail family transcriptional repressor 3, [Score=177, Expect=1e-54]; ENSG00000124216, SNAI1, snail family transcriptional repressor 1, [Score=173, Expect=2e-53]} {Mouse: ENSMUSG00000022676, Snai2, snail family zinc finger 2, [Score=182, Expect=3e-57]; ENSMUSG00000042821, Snai1, snail family zinc finger 1, [Score=176, Expect=1e-54]; ENSMUSG00000006587, Snai3, snail family zinc finger 3, [Score=173, Expect=3e-53]} {Dmel: FBgn0001983, wor, worniu, [Score=179, Expect=3e-53]} {Celegans: WBGene00019299, snai-1, SNAIl family zinc finger 2 transcription factor homolog, [Score=137, Expect=6e-41]} {Smed: dd_Smed_v6_10216_0_1, dd_Smed_v6_10216_0_1, [Score=179, Expect=6e-56]} {RNA1509_43471} {RNA1310_31295.1} {RNA815_31028}

Mlig455_063570 {REF} {Length: 2075} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=82.3]; C2H2-type zinc finger [PF13894.8, score=65.4]; Zinc-finger double domain [PF13465.8, score=58.7]; C2H2-type zinc finger [PF13912.8, score=37.3]; Zinc-finger of C2H2 type [PF12874.9, score=36.1]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=35.1]; C2HE / C2H2 / C2HC zinc-binding finger [PF16278.7, score=29.3]} {Human: ENSG00000019549, SNAI2, snail family transcriptional repressor 2, [Score=197, Expect=1e-60]} {Mouse: ENSMUSG00000022676, Snai2, snail family zinc finger 2, [Score=197, Expect=9e-61]} {Dmel: FBgn0001983, wor, worniu, [Score=194, Expect=4e-57]} {Celegans: WBGene00019299, snai-1, SNAIl family zinc finger 2 transcription factor homolog, [Score=148, Expect=3e-43]} {Smed: dd_Smed_v6_10216_0_1, dd_Smed_v6_10216_0_1, [Score=189, Expect=1e-57]} {RNA1509_43471} {RNA1310_31295.1} {RNA815_31028}
4. MligTC455_20437 1167 24.31 Mlig455_038760

Neo: -

Age: logFC(26M/2M)=0.326

 NF1 1.751 - - - 0.788 0.963 - Mlig455_038760 {REF} {Length: 4351} {Human: ENSG00000196712, NF1, neurofibromin 1, [Score=139, Expect=5e-35]} {Mouse: ENSMUSG00000020716, Nf1, neurofibromin 1, [Score=139, Expect=6e-35]} {Dmel: FBgn0015269, Nf1, Neurofibromin 1, [Score=199, Expect=4e-55]} {Smed: dd_Smed_v6_7869_0_1, dd_Smed_v6_7869_0_1, [Score=187, Expect=2e-51]} {RNA1509_12710, RNA1509_37067, RNA1509_51551, RNA1509_56331} {RNA1310_118.1, RNA1509_12710, RNA1509_37067, RNA1509_51551, RNA1509_56331} {RNA1509_12710, RNA1509_37067, RNA1509_51551, RNA1509_56331, RNA815_4409}
5. MligTC455_19041 54 1.12 Mlig455_030662

Neo: -

Age: -

Region-enriched R2: 9.337/0.00002
Region-enriched R3: 6.044/0.00168

 CAV1 1.717 - - - 0.745 0.972 - Mlig455_030662 {REF} {Length: 940} {Pfam: Caveolin [PF01146.19, score=117.8]} {Human: ENSG00000105974, CAV1, caveolin 1, [Score=98.2, Expect=1e-26]} {Mouse: ENSMUSG00000007655, Cav1, caveolin 1, caveolae protein, [Score=99.4, Expect=3e-27]} {Celegans: WBGene00000301, cav-1, Caveolin-1, [Score=73.9, Expect=6e-17]} {Smed: dd_Smed_v6_6535_0_1, dd_Smed_v6_6535_0_1, [RH, Score=133, Expect=6e-41]} {RNA1509_53325} {RNA1310_97043} {RNA815_32565}
6. MligTC455_20031 42 0.88 Mlig455_047335

Neo: -

Age: -

 0.98 - - - - 0.980 - Mlig455_047335 {REF} {Length: 686} {RNA1509_37632} {RNA1310_58870} {RNA815_58496}
7. MligTC455_32702 50 1.04 Mlig455_038236

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.961

 0.976 - - - - 0.976 - Mlig455_038236 {REF} {Length: 2121} {Pfam: Immunoglobulin domain [PF00047.27, score=34.8]; Immunoglobulin domain [PF13927.8, score=34.7]; Immunoglobulin domain [PF13895.8, score=31.0]; Immunoglobulin V-set domain [PF07686.19, score=29.1]} {RNA1509_25243} {RNA1310_15467} {RNA815_2456.1}
8. MligTC455_12969 66 1.37 Mlig455_022444

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-2.475

 WSCD2 0.968 - - - 0.968 - - Mlig455_022444 {REF} {Length: 1083} {Pfam: WSC domain [PF01822.21, score=46.8]} {Human: ENSG00000075035, WSCD2, WSC domain containing 2, [Score=53.5, Expect=1e-07]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=58.9, Expect=1e-09]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=46.2, Expect=1e-05]} {RNA1509_43359} {RNA1310_42988.1} {RNA815_39030}
9. MligTC455_38074 42 0.86 Mlig455_012626, Mlig455_022791, Mlig455_065585

Neo: -

Age: -

 0.968 - - - - 0.968 -

Mlig455_012626 {REF} {Length: 586} {NoTransDecoderORF} {RNA1509_28547} {RNA1310_53254} {RNA815_12221}

Mlig455_022791 {REF} {Length: 3617} {NoTransDecoderORF} {RNA1509_35506} {RNA1310_27800.2} {RNA815_9548}

Mlig455_065585 {REF} {Length: 1205} {NoTransDecoderORF} {RNA1509_35506} {RNA1310_3152.2} {RNA815_24918}
10. MligTC455_19407 8 0.16 Mlig455_013815

Neo: -

Age: -

 0.967 - - - 0.967 - - Mlig455_013815 {REF} {Length: 1008} {RNA1310_77749}
11. MligTC455_43445 98 2.05 Mlig455_043288

Neo: -

Age: -

 0.967 - - - 0.967 - - Mlig455_043288 {REF} {Length: 1770} {TRANSSPLICED} {Pfam: NICE-3 protein [PF07406.13, score=86.6]} {Dmel: FBgn0034172, CG6665, [Score=57.8, Expect=2e-09]} {RNA1509_24375} {RNA1310_15514.2} {RNA815_13288}
12. MligTC455_48040 27 0.56 Mlig455_030996, Mlig455_069430

Neo: -

Age: -

 0.966 - - - 0.966 - -

Mlig455_030996 {REF} {Length: 1439} {RNA1310_28432} {RNA815_8574}

Mlig455_069430 {REF} {Length: 1659} {RNA1509_58583} {RNA1310_28432} {RNA815_8574}
13. MligTC455_13076 6 0.12 Mlig455_024842

Neo: -

Age: -

 0.963 - - - - - 0.963 Mlig455_024842 {REF} {Length: 603} {NoTransDecoderORF} {RNA1310_40496} {RNA815_36176}
14. MligTC455_03679 12 0.24 Mlig455_065726

Neo: -

Age: -

 0.96 - - - 0.960 - - Mlig455_065726 {REF} {Length: 520} {NoTransDecoderORF} {RNA1509_35191} {RNA1310_132084} {RNA815_54684}
15. MligTC455_43005 10 0.22 Mlig455_060503

Neo: -

Age: -

 0.96 - - - - - 0.960 Mlig455_060503 {REF} {Length: 608} {NoTransDecoderORF} {RNA1310_134363}
16. MligTC455_42777 776 16.16 Mlig455_061330, Mlig455_061351, Mlig455_062681

Neo: -

Age: -

Region-enriched R2: 2.412/0.00354

Regeneration-downregulated BL: -7.472

Regeneration-depleted BL: -7.472

 HPCA, KCNIP3 0.958 - - - - 0.958 -

Mlig455_061330 {REF} {Length: 3398} {TRANSSPLICED} {Pfam: EF-hand domain pair [PF13499.8, score=54.3]; EF hand [PF00036.34, score=44.6]; EF-hand domain [PF13405.8, score=40.1]; EF hand [PF13202.8, score=22.1]} {Human: ENSG00000115041, KCNIP3, potassium voltage-gated channel interacting protein 3, [Score=53.9, Expect=1e-08]; ENSG00000138472, GUCA1C, guanylate cyclase activator 1C, [Score=52.4, Expect=2e-08]} {Mouse: ENSMUSG00000079056, Kcnip3, Kv channel interacting protein 3, calsenilin, [Score=51.6, Expect=4e-08]} {Dmel: FBgn0265595, CG44422, [Score=53.1, Expect=1e-08]} {Celegans: WBGene00003564, ncs-2, Neuronal calcium sensor 2, [Score=48.5, Expect=2e-07]} {Smed: dd_Smed_v6_5266_0_1, dd_Smed_v6_5266_0_1, [Score=47.4, Expect=3e-07]} {RNA1509_44520, RNA1509_55897} {RNA1310_41409.1, RNA1509_55897} {RNA1509_55897, RNA815_23006}

Mlig455_061351 {REF} {Length: 2885} {TRANSSPLICED} {Pfam: EF-hand domain pair [PF13499.8, score=53.9]; EF hand [PF00036.34, score=44.8]; EF-hand domain [PF13405.8, score=40.1]; EF hand [PF13202.8, score=22.3]} {Human: ENSG00000115041, KCNIP3, potassium voltage-gated channel interacting protein 3, [Score=53.9, Expect=1e-08]; ENSG00000138472, GUCA1C, guanylate cyclase activator 1C, [Score=53.1, Expect=1e-08]} {Mouse: ENSMUSG00000079056, Kcnip3, Kv channel interacting protein 3, calsenilin, [Score=51.6, Expect=5e-08]} {Dmel: FBgn0265595, CG44422, [Score=49.7, Expect=2e-07]} {Celegans: WBGene00003564, ncs-2, Neuronal calcium sensor 2, [Score=48.9, Expect=1e-07]} {RNA1509_55897} {RNA1310_41409.2} {RNA815_23006}

Mlig455_062681 {REF} {Length: 1756} {Pfam: EF-hand domain pair [PF13499.8, score=54.6]; EF hand [PF00036.34, score=44.6]; EF-hand domain [PF13405.8, score=40.1]; EF hand [PF13202.8, score=22.1]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=19.1]} {Human: ENSG00000121905, HPCA, hippocalcin, [Score=57.0, Expect=4e-10]; ENSG00000104490, NCALD, neurocalcin delta, [Score=55.5, Expect=1e-09]; ENSG00000115756, HPCAL1, hippocalcin like 1, [Score=54.3, Expect=4e-09]} {Mouse: ENSMUSG00000020907, Rcvrn, recoverin, [Score=57.0, Expect=3e-10]; ENSMUSG00000028785, Hpca, hippocalcin, [Score=57.0, Expect=3e-10]; ENSMUSG00000051359, Ncald, neurocalcin delta, [Score=55.5, Expect=9e-10]; ENSMUSG00000071379, Hpcal1, hippocalcin-like 1, [Score=54.7, Expect=2e-09]} {Dmel: FBgn0013303, Nca, Neurocalcin, [Score=53.9, Expect=2e-09]} {Celegans: WBGene00003563, ncs-1, Neuronal calcium sensor 1, [Score=48.5, Expect=2e-07]} {Smed: dd_Smed_v6_2568_0_1, dd_Smed_v6_2568_0_1, [Score=51.2, Expect=1e-08]} {RNA1509_44520} {RNA1310_41409.1, RNA1509_44520} {RNA1509_44520, RNA815_23006}
17. MligTC455_20597 327 6.82 Mlig455_010434, Mlig455_070912

Neo: Germline

Age: -

Region-specific R4: 6.568

 0.955 - - - 0.955 - -

Mlig455_010434 {REF} {Length: 1107} {RNA1509_21361, RNA1509_36699} {RNA1310_30953, RNA1509_21361, RNA1509_36699} {RNA1509_21361, RNA1509_36699, RNA815_17410}

Mlig455_070912 {REF} {Length: 1104} {RNA1509_21361, RNA1509_56430} {RNA1310_30953, RNA1509_56430} {RNA1509_56430, RNA815_17410}
18. MligTC455_35387 36 0.76 Mlig455_022493

Neo: -

Age: -

 STOM 0.954 - - - 0.954 - - Mlig455_022493 {REF} {Length: 3725} {Pfam: SPFH domain / Band 7 family [PF01145.27, score=106.9]} {Human: ENSG00000148175, STOM, stomatin, [Score=318, Expect=2e-105]} {Mouse: ENSMUSG00000026880, Stom, stomatin, [Score=318, Expect=1e-105]} {Dmel: FBgn0260657, CG42540, [Score=333, Expect=4e-110]} {Celegans: WBGene00003166, mec-2, Mechanosensory protein 2, [Score=331, Expect=1e-110]} {Smed: dd_Smed_v6_6396_0_1, dd_Smed_v6_6396_0_1, [Score=392, Expect=4e-135]} {RNA1509_58730} {RNA1310_46627} {RNA815_48856}
19. MligTC455_53348 35 0.73 Mlig455_015410

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_015410 {REF} {Length: 651} {NoTransDecoderORF} {RNA1509_3658} {RNA1310_99291.2} {RNA815_125.1}
20. MligTC455_31799 74 1.54 Mlig455_026276, Mlig455_026280

Neo: -

Age: Down-Up-Down

 TRIM2, TRIM3 0.952 - - - - 0.952 -

Mlig455_026276 {REF} {Length: 2251} {TRANSSPLICED} {Pfam: NHL repeat [PF01436.23, score=30.9]} {Human: ENSG00000110171, TRIM3, tripartite motif containing 3, [Score=66.6, Expect=9e-11]; ENSG00000109654, TRIM2, tripartite motif containing 2, [Score=64.3, Expect=4e-10]} {Mouse: ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=66.2, Expect=7e-11]; ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=64.3, Expect=3e-10]} {RNA1509_15622} {RNA1310_14145.1} {RNA815_3900.1}

Mlig455_026280 {REF} {Length: 2260} {Pfam: NHL repeat [PF01436.23, score=30.6]} {Human: ENSG00000109654, TRIM2, tripartite motif containing 2, [Score=61.2, Expect=3e-09]} {Mouse: ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=61.2, Expect=2e-09]} {Celegans: WBGene00003597, nhl-1, RING finger protein nhl-1, [Score=50.8, Expect=2e-06]} {RNA1509_23300} {RNA1310_14145.1} {RNA815_3900.1}
21. MligTC455_40997 96 2 Mlig455_001296

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_001296 {REF} {Length: 2152} {Smed: dd_Smed_v6_29877_0_1, dd_Smed_v6_29877_0_1, [Score=89.0, Expect=3e-19]} {RNA1310_30591} {RNA815_40353}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA