M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_51988

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_51988 194 4.05 Mlig455_032184

Neo: -

Age: Down-Up-Down

 PLEKHG5 Mlig455_032184 {REF} {Length: 3915} {Pfam: RhoGEF domain [PF00621.22, score=89.9]} {Human: ENSG00000171680, PLEKHG5, pleckstrin homology and RhoGEF domain containing G5, [RH, Score=191, Expect=4e-50]} {Mouse: ENSMUSG00000039713, Plekhg5, pleckstrin homology domain containing, family G (with RhoGef domain) member 5, [RH, Score=195, Expect=8e-52]} {Dmel: FBgn0261556, CG42674, [RH, Score=177, Expect=8e-46]} {Celegans: WBGene00006476, rhgf-2, RHGF-2; RHo Guanine nucleotide exchange Factor, [Score=106, Expect=2e-23]} {Smed: dd_Smed_v6_10072_0_1, dd_Smed_v6_10072_0_1, [RH, Score=166, Expect=3e-43]} {RNA1509_23460} {RNA1310_1988, RNA1509_23460} {RNA1509_23460, RNA815_5839}

Cumulative graph for MligTC455_51988

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.312 2.784 0.26137 0.90995
RegionR2 0.813 2.784 0.49033 0.87208
RegionR3 1.842 2.784 0.02235 0.25351
RegionR4 0.578 2.784 0.57575 0.89303
RegionR5 0.306 2.784 0.71260 1.00000
RegionR6 1.149 2.784 0.22860 0.81109
RegionR7 -0.553 2.784 0.96528 1.00000
RegionR8 1.177 2.784 0.44608 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.207 2.784 0.99994 1.00000
RegenerationR2 0.94 2.784 0.14105 0.57077
RegenerationR3 -0.057 2.784 0.92659 1.00000
RegenerationR4 0.755 2.784 0.28943 0.73380
RegenerationR5 0.759 2.784 0.23685 0.67083
RegenerationR6 1.032 2.784 0.12048 0.42710
RegenerationBL 0.504 2.784 0.61514 0.95913
RegenerationTP -0.188 2.784 0.89040 1.00000


Genes with expression patterns similar to MligTC455_51988

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_51988 194 4.05 Mlig455_032184

Neo: -

Age: Down-Up-Down

 PLEKHG5 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_032184 {REF} {Length: 3915} {Pfam: RhoGEF domain [PF00621.22, score=89.9]} {Human: ENSG00000171680, PLEKHG5, pleckstrin homology and RhoGEF domain containing G5, [RH, Score=191, Expect=4e-50]} {Mouse: ENSMUSG00000039713, Plekhg5, pleckstrin homology domain containing, family G (with RhoGef domain) member 5, [RH, Score=195, Expect=8e-52]} {Dmel: FBgn0261556, CG42674, [RH, Score=177, Expect=8e-46]} {Celegans: WBGene00006476, rhgf-2, RHGF-2; RHo Guanine nucleotide exchange Factor, [Score=106, Expect=2e-23]} {Smed: dd_Smed_v6_10072_0_1, dd_Smed_v6_10072_0_1, [RH, Score=166, Expect=3e-43]} {RNA1509_23460} {RNA1310_1988, RNA1509_23460} {RNA1509_23460, RNA815_5839}
2. MligTC455_41592 1224 25.5 Mlig455_017260

Neo: Irradiation

Age: -

 SPG7 1.687 - - - 0.953 0.734 - Mlig455_017260 {REF} {Length: 2931} {TRANSSPLICED} {Pfam: Peptidase family M41 [PF01434.20, score=133.8]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=131.5]; AAA+ lid domain [PF17862.3, score=44.3]; AAA ATPase domain [PF13191.8, score=26.5]; AAA domain (dynein-related subfamily) [PF07728.16, score=23.3]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=19.3]; AAA domain [PF13401.8, score=18.8]} {Human: ENSG00000197912, SPG7, SPG7, paraplegin matrix AAA peptidase subunit, [Score=450, Expect=3e-146]} {Mouse: ENSMUSG00000000738, Spg7, SPG7, paraplegin matrix AAA peptidase subunit, [Score=445, Expect=1e-145]} {Dmel: FBgn0024992, CG2658, [RH, Score=460, Expect=8e-150]} {Celegans: WBGene00021425, ppgn-1, ParaPleGiN AAA protease family; Paraplegin, [Score=425, Expect=2e-137]} {Smed: dd_Smed_v6_3475_0_1, dd_Smed_v6_3475_0_1, [RH, Score=443, Expect=1e-144]} {RNA1509_5475} {RNA1310_4379, RNA1509_5475} {RNA1509_5475, RNA815_3147}
3. MligTC455_20667 992 20.67 Mlig455_031254, Mlig455_031299, Mlig455_031329

Neo: Neoblast, stringent

Age: logFC(26M/2M)=0.264

Region-enriched R5: 1.345/0.00244

 XPC 0.968 - - - 0.968 - -

Mlig455_031254 {REF} {Length: 234} {NoTransDecoderORF} {RNA1509_41875} {RNA1310_5347}

Mlig455_031299 {REF} {Length: 5228} {Pfam: Rad4 beta-hairpin domain 3 [PF10405.11, score=85.1]; Rad4 beta-hairpin domain 2 [PF10404.11, score=58.3]; Rad4 beta-hairpin domain 1 [PF10403.11, score=54.1]; Rad4 transglutaminase-like domain [PF03835.17, score=50.1]} {Human: ENSG00000154767, XPC, XPC complex subunit, DNA damage recognition and repair factor, [RH, Score=292, Expect=5e-84]} {Mouse: ENSMUSG00000030094, Xpc, xeroderma pigmentosum, complementation group C, [RH, Score=302, Expect=6e-88]} {Dmel: FBgn0004698, Xpc, Xeroderma pigmentosum, complementation group C, [RH, Score=296, Expect=3e-84]} {Celegans: WBGene00022296, xpc-1, XPC (Xeroderma Pigmentosum group C) DNA repair gene homolog, [RH, Score=231, Expect=1e-62]} {Smed: dd_Smed_v6_5100_0_1, dd_Smed_v6_5100_0_1, [RH, Score=236, Expect=3e-67]} {RNA1509_22240, RNA1509_37174, RNA1509_43141} {RNA1310_2636, RNA1509_22240, RNA1509_37174, RNA1509_43141} {RNA1509_22240, RNA1509_37174, RNA1509_43141, RNA815_7190.1}

Mlig455_031329 {REF} {Length: 3756} {TRANSSPLICED} {Pfam: Rad4 beta-hairpin domain 3 [PF10405.11, score=84.0]; Rad4 beta-hairpin domain 2 [PF10404.11, score=58.3]; Rad4 beta-hairpin domain 1 [PF10403.11, score=52.6]; Rad4 transglutaminase-like domain [PF03835.17, score=50.2]} {Human: ENSG00000154767, XPC, XPC complex subunit, DNA damage recognition and repair factor, [RH, Score=283, Expect=5e-81]} {Mouse: ENSMUSG00000030094, Xpc, xeroderma pigmentosum, complementation group C, [RH, Score=301, Expect=9e-88]} {Dmel: FBgn0004698, Xpc, Xeroderma pigmentosum, complementation group C, [RH, Score=296, Expect=2e-84]} {Celegans: WBGene00022296, xpc-1, XPC (Xeroderma Pigmentosum group C) DNA repair gene homolog, [RH, Score=229, Expect=3e-62]} {Smed: dd_Smed_v6_5100_0_1, dd_Smed_v6_5100_0_1, [RH, Score=237, Expect=2e-67]} {RNA1509_38140} {RNA1310_4273.2} {RNA815_7190.1}
4. MligTC455_22328 1046 21.78 Mlig455_024145, Mlig455_024156

Neo: -

Age: -

 PTGES2 0.951 - - - 0.951 - -

Mlig455_024145 {REF} {Length: 2157} {TRANSSPLICED} {Pfam: RNA transcription, translation and transport factor protein [PF10036.11, score=223.0]; Glutaredoxin [PF00462.26, score=43.6]; Glutathione S-transferase, N-terminal domain [PF13417.8, score=41.9]; Glutathione S-transferase, N-terminal domain [PF13409.8, score=30.6]; Glutathione S-transferase, N-terminal domain [PF02798.22, score=20.7]; Glutathione S-transferase, C-terminal domain [PF13410.8, score=20.6]} {Human: ENSG00000148334, PTGES2, prostaglandin E synthase 2, [RH, Score=214, Expect=2e-63]} {Mouse: ENSMUSG00000026820, Ptges2, prostaglandin E synthase 2, [RH, Score=213, Expect=6e-63]} {Dmel: FBgn0004465, Su(P), Suppressor of ref(2)P sterility, [RH, Score=210, Expect=9e-62]} {Celegans: WBGene00011239, pges-2, ProstaGlandin E Synthase homolog, [RH, Score=239, Expect=9e-74]} {Smed: dd_Smed_v6_6741_0_1, dd_Smed_v6_6741_0_1, [RH, Score=254, Expect=1e-79]} {RNA1509_41821} {RNA1310_20059} {RNA815_10948}

Mlig455_024156 {REF} {Length: 1096} {Human: ENSG00000148334, PTGES2, prostaglandin E synthase 2, [RH, Score=130, Expect=1e-37]} {Mouse: ENSMUSG00000026820, Ptges2, prostaglandin E synthase 2, [Score=134, Expect=3e-37]} {Dmel: FBgn0004465, Su(P), Suppressor of ref(2)P sterility, [Score=131, Expect=4e-36]} {Celegans: WBGene00011239, pges-2, ProstaGlandin E Synthase homolog, [Score=156, Expect=3e-46]} {Smed: dd_Smed_v6_6741_0_1, dd_Smed_v6_6741_0_1, [Score=156, Expect=9e-47]} {RNA1509_24174} {RNA1310_20059} {RNA815_10948}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA