TomoSeq data search

Data search

Results for MligTC455_51995

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_51995

773

16.10

Mlig455_009690, Mlig455_063052

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.244

SMAD3

Mlig455_009690 {REF} {Length: 4845} {TRANSSPLICED} {Pfam: MH2 domain [PF03166.16, score=208.1]; MH1 domain [PF03165.18, score=81.1]} {Human: ENSG00000166949, SMAD3, SMAD family member 3, [Score=335, Expect=6e-111]; ENSG00000175387, SMAD2, SMAD family member 2, [Score=329, Expect=9e-109]; ENSG00000120693, SMAD9, SMAD family member 9, [Score=325, Expect=1e-106]; ENSG00000170365, SMAD1, SMAD family member 1, [Score=319, Expect=2e-104]} {Mouse: ENSMUSG00000032402, Smad3, SMAD family member 3, [Score=335, Expect=4e-111]; ENSMUSG00000024563, Smad2, SMAD family member 2, [Score=329, Expect=6e-109]; ENSMUSG00000031681, Smad1, SMAD family member 1, [Score=322, Expect=2e-105]} {Dmel: FBgn0011648, Mad, Mothers against dpp, [Score=330, Expect=3e-109]} {Celegans: WBGene00004856, sma-2, Dwarfin sma-2, [Score=198, Expect=1e-58]} {Smed: dd_Smed_v6_6050_0_1, dd_Smed_v6_6050_0_1, [Score=326, Expect=2e-108]} {RNA1509_16626, RNA1509_22400} {RNA1310_23806, RNA1509_16626, RNA1509_22400} {RNA1509_16626, RNA1509_22400, RNA815_18514}

Mlig455_063052 {REF} {Length: 4507} {TRANSSPLICED} {Pfam: MH2 domain [PF03166.16, score=208.0]; MH1 domain [PF03165.18, score=81.2]} {Human: ENSG00000166949, SMAD3, SMAD family member 3, [Score=330, Expect=5e-109]; ENSG00000175387, SMAD2, SMAD family member 2, [Score=325, Expect=1e-106]; ENSG00000120693, SMAD9, SMAD family member 9, [Score=323, Expect=8e-106]; ENSG00000170365, SMAD1, SMAD family member 1, [Score=315, Expect=1e-102]} {Mouse: ENSMUSG00000032402, Smad3, SMAD family member 3, [Score=330, Expect=3e-109]; ENSMUSG00000024563, Smad2, SMAD family member 2, [Score=325, Expect=7e-107]; ENSMUSG00000031681, Smad1, SMAD family member 1, [Score=316, Expect=4e-103]} {Dmel: FBgn0011648, Mad, Mothers against dpp, [Score=325, Expect=7e-107]} {Celegans: WBGene00004856, sma-2, Dwarfin sma-2, [Score=198, Expect=1e-58]} {Smed: dd_Smed_v6_6877_0_1, dd_Smed_v6_6877_0_1, [Score=306, Expect=9e-100]} {RNA1509_16668} {RNA1310_40116.1} {RNA815_18514}

Cumulative graph for MligTC455_51995

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-8.157	4.372	0.00708	0.25776
RegionR2	2.127	4.372	0.00713	0.08104
RegionR3	0.927	4.372	0.25149	0.79594
RegionR4	0.105	4.372	0.81001	1.00000
RegionR5	1.558	4.372	0.01203	0.06603
RegionR6	1.281	4.372	0.07573	0.51092
RegionR7	0.542	4.372	0.56047	1.00000
RegionR8	1.617	4.372	0.04470	0.41407

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	8.644	4.372	0.04138	0.67581
RegenerationR2	0.116	4.372	0.81055	0.99304
RegenerationR3	1.191	4.372	0.03398	0.32745
RegenerationR4	1.338	4.372	0.02740	0.26584
RegenerationR5	0.712	4.372	0.16216	0.58652
RegenerationR6	0.288	4.372	0.61050	0.87451
RegenerationBL	0.872	4.372	0.15473	0.47055
RegenerationTP	0.737	4.372	0.24848	0.69568

Genes with expression patterns similar to MligTC455_51995

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_51995	773	16.1	Mlig455_009690, Mlig455_063052	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.244	SMAD3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_009690 {REF} {Length: 4845} {TRANSSPLICED} {Pfam: MH2 domain [PF03166.16, score=208.1]; MH1 domain [PF03165.18, score=81.1]} {Human: ENSG00000166949, SMAD3, SMAD family member 3, [Score=335, Expect=6e-111]; ENSG00000175387, SMAD2, SMAD family member 2, [Score=329, Expect=9e-109]; ENSG00000120693, SMAD9, SMAD family member 9, [Score=325, Expect=1e-106]; ENSG00000170365, SMAD1, SMAD family member 1, [Score=319, Expect=2e-104]} {Mouse: ENSMUSG00000032402, Smad3, SMAD family member 3, [Score=335, Expect=4e-111]; ENSMUSG00000024563, Smad2, SMAD family member 2, [Score=329, Expect=6e-109]; ENSMUSG00000031681, Smad1, SMAD family member 1, [Score=322, Expect=2e-105]} {Dmel: FBgn0011648, Mad, Mothers against dpp, [Score=330, Expect=3e-109]} {Celegans: WBGene00004856, sma-2, Dwarfin sma-2, [Score=198, Expect=1e-58]} {Smed: dd_Smed_v6_6050_0_1, dd_Smed_v6_6050_0_1, [Score=326, Expect=2e-108]} {RNA1509_16626, RNA1509_22400} {RNA1310_23806, RNA1509_16626, RNA1509_22400} {RNA1509_16626, RNA1509_22400, RNA815_18514} Mlig455_063052 {REF} {Length: 4507} {TRANSSPLICED} {Pfam: MH2 domain [PF03166.16, score=208.0]; MH1 domain [PF03165.18, score=81.2]} {Human: ENSG00000166949, SMAD3, SMAD family member 3, [Score=330, Expect=5e-109]; ENSG00000175387, SMAD2, SMAD family member 2, [Score=325, Expect=1e-106]; ENSG00000120693, SMAD9, SMAD family member 9, [Score=323, Expect=8e-106]; ENSG00000170365, SMAD1, SMAD family member 1, [Score=315, Expect=1e-102]} {Mouse: ENSMUSG00000032402, Smad3, SMAD family member 3, [Score=330, Expect=3e-109]; ENSMUSG00000024563, Smad2, SMAD family member 2, [Score=325, Expect=7e-107]; ENSMUSG00000031681, Smad1, SMAD family member 1, [Score=316, Expect=4e-103]} {Dmel: FBgn0011648, Mad, Mothers against dpp, [Score=325, Expect=7e-107]} {Celegans: WBGene00004856, sma-2, Dwarfin sma-2, [Score=198, Expect=1e-58]} {Smed: dd_Smed_v6_6877_0_1, dd_Smed_v6_6877_0_1, [Score=306, Expect=9e-100]} {RNA1509_16668} {RNA1310_40116.1} {RNA815_18514}
2.	MligTC455_15446	84	1.76	Mlig455_049757	Neo: Irradiation Age: logFC(26M/2M)=0.275 Region-enriched R5: 3.436/0.00161	ESRRG	1.7	-	0.727	-	0.973	-	-	Mlig455_049757 {REF} {Length: 2879} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=80.9]} {Human: ENSG00000196482, ESRRG, estrogen related receptor gamma, [Score=85.1, Expect=4e-19]; ENSG00000116833, NR5A2, nuclear receptor subfamily 5 group A member 2, [Score=83.2, Expect=2e-18]; ENSG00000119715, ESRRB, estrogen related receptor beta, [Score=82.8, Expect=3e-18]; ENSG00000173153, ESRRA, estrogen related receptor alpha, [Score=82.8, Expect=2e-18]; ENSG00000175745, NR2F1, nuclear receptor subfamily 2 group F member 1, [Score=82.4, Expect=2e-18]; ENSG00000185551, NR2F2, nuclear receptor subfamily 2 group F member 2, [Score=82.0, Expect=4e-18]} {Mouse: ENSMUSG00000026610, Esrrg, estrogen-related receptor gamma, [Score=85.1, Expect=3e-19]; ENSMUSG00000024955, Esrra, estrogen related receptor, alpha, [Score=83.2, Expect=1e-18]; ENSMUSG00000069171, Nr2f1, nuclear receptor subfamily 2, group F, member 1, [Score=82.4, Expect=2e-18]; ENSMUSG00000030551, Nr2f2, nuclear receptor subfamily 2, group F, member 2, [Score=82.0, Expect=3e-18]; ENSMUSG00000021255, Esrrb, estrogen related receptor, beta, [Score=82.0, Expect=4e-18]; ENSMUSG00000026398, Nr5a2, nuclear receptor subfamily 5, group A, member 2, [Score=81.6, Expect=5e-18]; ENSMUSG00000023034, Nr4a1, nuclear receptor subfamily 4, group A, member 1, [Score=81.6, Expect=6e-18]} {Dmel: FBgn0035849, ERR, estrogen-related receptor, [Score=84.3, Expect=4e-19]} {Celegans: WBGene00003678, nhr-88, Nuclear Hormone Receptor family, [Score=77.4, Expect=1e-17]} {Smed: dd_Smed_v6_33286_0_2, dd_Smed_v6_33286_0_2, [Score=88.6, Expect=2e-21]} {RNA1509_22231, RNA1509_56454} {RNA1310_7459.2, RNA1509_56454} {RNA1509_56454, RNA815_5691.1}
3.	MligTC455_39051	649	13.51	Mlig455_009777, Mlig455_054926	Neo: - Age: -		1.67	-	-	-	0.957	-	0.713	Mlig455_009777 {REF} {Length: 1081} {NoTransDecoderORF} {RNA1509_31588, RNA1509_38997} {RNA1310_28624.1, RNA1509_31588, RNA1509_38997} {RNA1509_31588, RNA1509_38997, RNA815_15427} Mlig455_054926 {REF} {Length: 1048} {NoTransDecoderORF} {RNA1509_38997} {RNA1310_28624.1} {RNA815_15427}
4.	MligTC455_25497	257	5.35	Mlig455_021585	Neo: - Age: -		1.664	-	-	0.704	0.960	-	-	Mlig455_021585 {REF} {Length: 694} {NoTransDecoderORF} {RNA1509_24913, RNA1509_47081, RNA1509_55124, RNA1509_58789} {RNA1310_32307.1, RNA1509_24913, RNA1509_47081, RNA1509_55124, RNA1509_58789} {RNA1509_24913, RNA1509_47081, RNA1509_55124, RNA1509_58789, RNA815_996.1}
5.	MligTC455_15324	212	4.42	Mlig455_018628	Neo: - Age: -	CAPN7	0.971	-	-	-	-	-	0.971	Mlig455_018628 {REF} {Length: 2837} {TRANSSPLICED} {Pfam: Calpain family cysteine protease [PF00648.23, score=151.6]; Calpain large subunit, domain III [PF01067.24, score=65.5]; MIT (microtubule interacting and transport) domain [PF04212.20, score=58.0]} {Human: ENSG00000131375, CAPN7, calpain 7, [RH, Score=818, Expect=0.0]} {Mouse: ENSMUSG00000021893, Capn7, calpain 7, [RH, Score=830, Expect=0.0]} {Dmel: FBgn0003464, sol, small optic lobes, [Score=121, Expect=1e-27]} {Celegans: WBGene00000543, clp-2, CaLPain family, [RH, Score=621, Expect=0.0]} {Smed: dd_Smed_v6_6402_0_1, dd_Smed_v6_6402_0_1, [RH, Score=812, Expect=0.0]} {RNA1509_9441} {RNA1310_7284} {RNA815_5790}
6.	MligTC455_34249	231	4.81	Mlig455_062909	Neo: Int S/G2/M Age: Up-Down-Down	YTHDC2	0.965	-	-	-	0.965	-	-	Mlig455_062909 {REF} {Length: 6356} {TRANSSPLICED} {Pfam: Helicase associated domain (HA2) [PF04408.25, score=67.8]; Helicase conserved C-terminal domain [PF00271.33, score=48.5]; Oligonucleotide/oligosaccharide-binding (OB)-fold [PF07717.18, score=39.3]; R3H domain [PF01424.24, score=36.0]; AAA domain [PF13245.8, score=29.1]; KaiC [PF06745.15, score=20.4]} {Human: ENSG00000047188, YTHDC2, YTH domain containing 2, [RH, Score=917, Expect=0.0]} {Mouse: ENSMUSG00000034653, Ythdc2, YTH domain containing 2, [RH, Score=928, Expect=0.0]} {Dmel: FBgn0004581, bgcn, benign gonial cell neoplasm, [RH, Score=259, Expect=5e-70]} {Celegans: WBGene00009922, F52B5.3, [RH, Score=212, Expect=4e-55]} {Smed: dd_Smed_v6_4815_0_1, dd_Smed_v6_4815_0_1, [Score=214, Expect=7e-56]} {RNA1509_15401} {RNA1310_1583.1} {RNA815_6960}
7.	MligTC455_27130	286	5.96	Mlig455_034303	Neo: - Age: Down-Up-Down		0.963	-	-	-	0.963	-	-	Mlig455_034303 {REF} {Length: 3045} {TRANSSPLICED} {Pfam: E3 Ubiquitin Ligase RBR C-terminal domain [PF18091.3, score=22.4]; Zn-finger in Ran binding protein and others [PF00641.20, score=18.0]} {RNA1509_8153} {RNA1310_4894.1} {RNA815_2603.1}
8.	MligTC455_53101	861	17.94	Mlig455_002632	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.796		0.956	-	-	-	0.956	-	-	Mlig455_002632 {REF} {Length: 2212} {TRANSSPLICED} {Pfam: Ragulator complex protein LAMTOR5 [PF16672.7, score=64.8]; Roadblock/LC7 domain [PF03259.19, score=24.2]} {RNA1509_23665, RNA1509_7057} {RNA1310_14581.1, RNA1509_23665} {RNA1509_23665, RNA815_27600.1}
9.	MligTC455_08171	40	0.83	Mlig455_026527, Mlig455_032833	Neo: - Age: -		0.955	-	-	-	0.955	-	-	Mlig455_026527 {REF} {Length: 198} {NoTransDecoderORF} {RNA1310_39508} Mlig455_032833 {REF} {Length: 268} {NoTransDecoderORF} {RNA1310_39508}
10.	MligTC455_11542	573	11.94	Mlig455_044768, Mlig455_053665	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-1.653 Region-enriched R4: 2.751/0.02031 Region-enriched R5: 2.169/0.03057		0.954	-	-	-	0.954	-	-	Mlig455_044768 {REF} {Length: 686} {RNA1509_9067} {RNA1310_61939} {RNA815_30221.1} Mlig455_053665 {REF} {Length: 674} {RNA1509_9067} {RNA1310_61939} {RNA815_30221.1}
11.	MligTC455_48719	1459	30.39	Mlig455_053641	Neo: Int S/G2/M Age: -	COA4	0.953	-	-	-	0.953	-	-	Mlig455_053641 {REF} {Length: 578} {TRANSSPLICED} {Pfam: CHCH domain [PF06747.15, score=23.2]} {Human: ENSG00000181924, COA4, cytochrome c oxidase assembly factor 4 homolog, [RH, Score=63.2, Expect=2e-14]} {Mouse: ENSMUSG00000044881, Coa4, cytochrome c oxidase assembly factor 4, [RH, Score=65.1, Expect=2e-15]} {Dmel: FBgn0265083, CG44194, [RH, Score=62.4, Expect=1e-14]} {Celegans: WBGene00011857, T20D3.3, [RH, Score=63.2, Expect=9e-15]} {Smed: dd_Smed_v6_4811_0_1, dd_Smed_v6_4811_0_1, [RH, Score=62.4, Expect=6e-15]} {RNA1509_11132, RNA1509_14110, RNA1509_17460} {RNA1310_61414, RNA1509_11132, RNA1509_14110, RNA1509_17460} {RNA1509_11132, RNA1509_14110, RNA1509_17460, RNA815_16665.1}
12.	MligTC455_11057	29	0.6	Mlig455_021175, Mlig455_021221, Mlig455_057876	Neo: - Age: -	ZFP36L1	0.95	-	-	-	0.950	-	-	Mlig455_021175 {REF} {Length: 1478} {Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=58.8]; Zinc finger domain [PF18345.3, score=35.7]; RNA-binding, Nab2-type zinc finger [PF14608.8, score=29.0]; CCCH-type zinc finger [PF18044.3, score=28.1]} {Human: ENSG00000185650, ZFP36L1, ZFP36 ring finger protein like 1, [Score=67.8, Expect=2e-14]; ENSG00000152518, ZFP36L2, ZFP36 ring finger protein like 2, [Score=66.2, Expect=9e-14]} {Mouse: ENSMUSG00000059334, Zfp36l3, zinc finger protein 36, C3H type-like 3, [Score=69.7, Expect=4e-15]; ENSMUSG00000021127, Zfp36l1, zinc finger protein 36, C3H type-like 1, [Score=68.6, Expect=7e-15]} {Dmel: FBgn0011837, Tis11, Tis11 zinc finger protein, [Score=69.3, Expect=4e-15]} {Celegans: WBGene00007961, C35D6.4, [RH, Score=66.6, Expect=6e-15]} {RNA1310_91211} {RNA815_52611} Mlig455_021221 {REF} {Length: 3154} {RNA1509_23663} {RNA1310_23883} {RNA815_16092} Mlig455_057876 {REF} {Length: 2829} {RNA1509_23663} {RNA1310_23883} {RNA815_16092}

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