M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_52181

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_52181 7 0.15 Mlig455_014956

Neo: -

Age: -

 Mlig455_014956 {REF} {Length: 717} {NoTransDecoderORF} {RNA1509_59012} {RNA1310_70807} {RNA815_13116}

Cumulative graph for MligTC455_52181

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.92 0.548 0.99987 1.00000
RegionR2 -1.251 0.548 0.99979 1.00000
RegionR3 0.287 0.548 0.99992 1.00000
RegionR4 2.34 0.548 0.99971 1.00000
RegionR5 1.265 0.548 0.99990 1.00000
RegionR6 0.492 0.548 0.99998 1.00000
RegionR7 -0.42 0.548 0.99993 1.00000
RegionR8 -0.794 0.548 0.99995 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.324 0.548 0.99984 1.00000
RegenerationR2 2.312 0.548 0.99956 1.00000
RegenerationR3 -0.542 0.548 0.99989 1.00000
RegenerationR4 -0.087 0.548 0.99990 1.00000
RegenerationR5 0.978 0.548 1.00000 1.00000
RegenerationR6 1.65 0.548 0.99962 1.00000
RegenerationBL -0.95 0.548 0.99992 1.00000
RegenerationTP -0.661 0.548 0.99995 1.00000


Genes with expression patterns similar to MligTC455_52181

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_52181 7 0.15 Mlig455_014956

Neo: -

Age: -

 1 - - - 1.000 - - Mlig455_014956 {REF} {Length: 717} {NoTransDecoderORF} {RNA1509_59012} {RNA1310_70807} {RNA815_13116}
2. MligTC455_38966 79 1.65 Mlig455_032200, Mlig455_054191

Neo: -

Age: Up-Down-Down

 UTRN 0.972 - - - 0.972 - -

Mlig455_032200 {REF} {Length: 2203} {Human: ENSG00000152818, UTRN, utrophin, [Score=65.9, Expect=8e-12]} {Mouse: ENSMUSG00000019820, Utrn, utrophin, [Score=62.8, Expect=6e-11]} {Dmel: FBgn0260003, Dys, Dystrophin, [Score=58.2, Expect=1e-09]} {Smed: dd_Smed_v6_5325_0_1, dd_Smed_v6_5325_0_1, [Score=91.3, Expect=4e-21]} {RNA1509_38827} {RNA1310_32833} {RNA815_17087}

Mlig455_054191 {REF} {Length: 7646} {Pfam: EF-hand [PF09069.13, score=126.3]; EF hand [PF09068.13, score=102.4]; Zinc finger, ZZ type [PF00569.19, score=36.5]; WW domain [PF00397.28, score=19.9]} {Human: ENSG00000152818, UTRN, utrophin, [RH, Score=493, Expect=2e-140]; ENSG00000198947, DMD, dystrophin, [RH, Score=491, Expect=8e-145]} {Mouse: ENSMUSG00000045103, Dmd, dystrophin, muscular dystrophy, [RH, Score=488, Expect=4e-139]; ENSMUSG00000019820, Utrn, utrophin, [RH, Score=485, Expect=5e-138]} {Dmel: FBgn0260003, Dys, Dystrophin, [RH, Score=520, Expect=1e-155]} {Celegans: WBGene00001131, dys-1, Dystrophin-1, [RH, Score=344, Expect=1e-94]} {Smed: dd_Smed_v6_5325_0_3, dd_Smed_v6_5325_0_3, [RH, Score=302, Expect=7e-82]} {RNA1509_38827} {RNA1310_24533} {RNA815_12379}
3. MligTC455_28335 535 11.15 Mlig455_036210, Mlig455_043836

Neo: -

Age: Down-Up-Down

 0.959 - - - 0.959 - -

Mlig455_036210 {REF} {Length: 2133} {TRANSSPLICED} {RNA1509_17829} {RNA1310_2040.1} {RNA815_23112}

Mlig455_043836 {REF} {Length: 2125} {TRANSSPLICED} {RNA1509_17829} {RNA1310_2040.1} {RNA815_23112}
4. MligTC455_21520 23 0.48 Mlig455_037412

Neo: -

Age: -

 ANGPT1 0.957 - - - 0.957 - - Mlig455_037412 {REF} {Length: 6121} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=118.1]} {Human: ENSG00000154188, ANGPT1, angiopoietin 1, [Score=105, Expect=9e-26]; ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=99.8, Expect=7e-23]} {Mouse: ENSMUSG00000022309, Angpt1, angiopoietin 1, [Score=105, Expect=3e-25]} {Dmel: FBgn0034160, CG5550, [Score=98.6, Expect=4e-24]} {Celegans: WBGene00020516, T15B7.1, [Score=60.5, Expect=3e-10]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=94.4, Expect=2e-21]} {RNA1509_46308} {RNA1310_83695, RNA1509_46308} {RNA1509_46308, RNA815_21157}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA