M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_52211

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_52211 42 0.87 Mlig455_014438

Neo: -

Age: -

 Mlig455_014438 {REF} {Length: 697} {Pfam: Domain of unknown function (DUF4573) [PF15140.8, score=20.7]} {RNA1509_54058} {RNA1310_50296} {RNA815_23688.2}

Cumulative graph for MligTC455_52211

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.896 1.097 1.00000 1.00000
RegionR2 1.682 1.097 0.28362 0.67026
RegionR3 0.519 1.097 0.46769 0.97402
RegionR4 1.323 1.097 0.99992 1.00000
RegionR5 -1.014 1.097 1.00000 1.00000
RegionR6 -0.756 1.097 0.76470 1.00000
RegionR7 -0.03 1.097 0.58846 1.00000
RegionR8 2.172 1.097 0.16345 0.73133

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.036 1.097 1.00000 1.00000
RegenerationR2 -1.862 1.097 0.07822 0.45146
RegenerationR3 -1.77 1.097 0.19886 0.63349
RegenerationR4 -1.289 1.097 0.65483 0.93532
RegenerationR5 -1.23 1.097 0.78172 0.98218
RegenerationR6 0.094 1.097 0.97850 1.00000
RegenerationBL -1.585 1.097 0.41358 0.78288
RegenerationTP -2.907 1.097 0.19217 0.63032


Genes with expression patterns similar to MligTC455_52211

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_52211 42 0.87 Mlig455_014438

Neo: -

Age: -

 3 1.000 - 1.000 1.000 - - Mlig455_014438 {REF} {Length: 697} {Pfam: Domain of unknown function (DUF4573) [PF15140.8, score=20.7]} {RNA1509_54058} {RNA1310_50296} {RNA815_23688.2}
2. MligTC455_37989 83 1.72 Mlig455_018192

Neo: -

Age: -

 1.694 0.955 - - 0.739 - - Mlig455_018192 {REF} {Length: 1275} {Pfam: EF-hand domain pair [PF13499.8, score=36.8]; EF-hand domain [PF13405.8, score=31.2]; EF hand [PF00036.34, score=29.3]; EF-hand domain pair [PF13833.8, score=20.5]; EF hand [PF13202.8, score=19.4]} {Smed: dd_Smed_v6_1010_0_1, dd_Smed_v6_1010_0_1, [Score=105, Expect=6e-27]} {RNA1310_31713.1} {RNA815_36423}
3. MligTC455_12032 92 1.91 Mlig455_044477

Neo: -

Age: -

 KCNIP1 1.656 0.954 - 0.702 - - - Mlig455_044477 {REF} {Length: 1077} {Pfam: EF hand [PF00036.34, score=60.1]; EF-hand domain [PF13405.8, score=57.2]; EF-hand domain pair [PF13499.8, score=54.7]; EF-hand domain pair [PF13833.8, score=47.2]; EF hand [PF13202.8, score=43.0]} {Human: ENSG00000182132, KCNIP1, potassium voltage-gated channel interacting protein 1, [Score=169, Expect=9e-52]; ENSG00000120049, KCNIP2, potassium voltage-gated channel interacting protein 2, [Score=164, Expect=7e-49]} {Mouse: ENSMUSG00000053519, Kcnip1, Kv channel-interacting protein 1, [Score=170, Expect=2e-52]} {Dmel: FBgn0039380, CG5890, [Score=150, Expect=5e-45]} {Celegans: WBGene00008998, ncs-4, Neuronal Calcium Sensor family, [RH, Score=121, Expect=1e-33]} {Smed: dd_Smed_v6_9727_0_1, dd_Smed_v6_9727_0_1, [Score=163, Expect=6e-50]} {RNA1310_40826} {RNA815_29104}
4. MligTC455_13502 5 0.1 Mlig455_053841

Neo: -

Age: -

 0.962 - - - 0.962 - - Mlig455_053841 {REF} {Length: 1670} {RNA1310_108641}
5. MligTC455_16405 50 1.04 Mlig455_005897

Neo: -

Age: logFC(26M/2M)=-0.520

 0.962 - - - 0.962 - - Mlig455_005897 {REF} {Length: 1462} {TRANSSPLICED} {RNA1509_47366} {RNA1310_11431.1} {RNA815_31453}
6. MligTC455_52195 4 0.09 Mlig455_042416

Neo: -

Age: -

 0.962 - - - 0.962 - - Mlig455_042416 {REF} {Length: 1754} {TRANSSPLICED} {Pfam: WSC domain [PF01822.21, score=47.7]} {RNA1310_29401} {RNA815_27180}
7. MligTC455_07354 54 1.12 Mlig455_034242, Mlig455_034274, Mlig455_067276

Neo: -

Age: -

 0.96 - - - 0.960 - -

Mlig455_034242 {REF} {Length: 492} {NoTransDecoderORF} {RNA1509_22608} {RNA1310_64029} {RNA815_10085.1}

Mlig455_034274 {REF} {Length: 319} {NoTransDecoderORF} {RNA1509_22608} {RNA1310_125781} {RNA815_10085.1}

Mlig455_067276 {REF} {Length: 1126} {NoTransDecoderORF} {RNA1509_22608} {RNA1310_57776} {RNA815_33265}
8. MligTC455_18343 24 0.51 Mlig455_009752, Mlig455_070106

Neo: -

Age: -

Region-enriched R4: 7.167/0.04292

 0.96 - - - 0.960 - -

Mlig455_009752 {REF} {Length: 389} {NoTransDecoderORF} {RNA1509_25325} {RNA1310_117642} {RNA815_17620.2}

Mlig455_070106 {REF} {Length: 478} {NoTransDecoderORF} {RNA1509_53541} {RNA1310_117642} {RNA815_17620.2}
9. MligTC455_40051 36 0.76 Mlig455_025990

Neo: -

Age: logFC(26M/2M)=-0.633

 PRKCE 0.96 - - - 0.960 - - Mlig455_025990 {REF} {Length: 2622} {Pfam: Protein kinase domain [PF00069.27, score=102.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=69.5]; Kinase-like [PF14531.8, score=19.5]} {Human: ENSG00000171132, PRKCE, protein kinase C epsilon, [Score=84.3, Expect=1e-16]} {Mouse: ENSMUSG00000045038, Prkce, protein kinase C, epsilon, [Score=82.0, Expect=5e-16]} {Dmel: FBgn0283472, S6k, Ribosomal protein S6 kinase, [Score=79.0, Expect=2e-15]} {Celegans: WBGene00009793, pkn-1, Protein Kinase N (PKN) homolog, [Score=73.2, Expect=2e-13]} {Smed: dd_Smed_v6_8010_0_1, dd_Smed_v6_8010_0_1, [Score=77.8, Expect=4e-15]} {RNA1509_36146} {RNA1310_24732} {RNA815_64704}
10. MligTC455_40365 195 4.05 Mlig455_038370

Neo: -

Age: Down-Up-Down

Region-enriched R2: 3.989/0.00156

 0.959 0.959 - - - - - Mlig455_038370 {REF} {Length: 3062} {RNA1509_57598} {RNA1310_48414, RNA1509_57598} {RNA1509_57598, RNA815_41099}
11. MligTC455_41138 172 3.59 Mlig455_056871

Neo: -

Age: -

 GNG7 0.958 0.958 - - - - - Mlig455_056871 {REF} {Length: 584} {Pfam: GGL domain [PF00631.24, score=50.2]} {Human: ENSG00000176533, GNG7, G protein subunit gamma 7, [Score=50.4, Expect=3e-09]} {Mouse: ENSMUSG00000036402, Gng12, guanine nucleotide binding protein (G protein), gamma 12, [Score=48.9, Expect=9e-09]; ENSMUSG00000032766, Gng11, guanine nucleotide binding protein (G protein), gamma 11, [Score=47.8, Expect=3e-08]} {Dmel: FBgn0263029, CG43324, [Score=53.9, Expect=7e-11]} {Celegans: WBGene00001681, gpc-1, Guanine nucleotide-binding protein subunit gamma, [Score=51.2, Expect=5e-10]} {Smed: dd_Smed_v6_1237_0_2, dd_Smed_v6_1237_0_2, [Score=102, Expect=4e-30]} {RNA1509_49315} {RNA1310_60760.1} {RNA815_37265}
12. MligTC455_10196 48 1 Mlig455_035825

Neo: -

Age: logFC(26M/2M)=-0.579

 SOX7 0.957 - - - 0.957 - - Mlig455_035825 {REF} {Length: 1154} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=74.3]; HMG-box domain [PF09011.12, score=30.4]; Pleckstrin homology domain [PF15404.8, score=20.3]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=19.5]} {Human: ENSG00000285438, SOX7, SRY-box 7, [Score=116, Expect=8e-30]; ENSG00000171056, SOX7, SRY-box 7, [Score=116, Expect=8e-30]; ENSG00000203883, SOX18, SRY-box 18, [Score=115, Expect=3e-29]; ENSG00000125398, SOX9, SRY-box 9, [Score=113, Expect=5e-28]; ENSG00000164736, SOX17, SRY-box 17, [Score=113, Expect=2e-28]} {Mouse: ENSMUSG00000025902, Sox17, SRY (sex determining region Y)-box 17, [RH, Score=123, Expect=2e-34]} {Dmel: FBgn0005613, Sox15, Sox box protein 15, [Score=116, Expect=4e-29]} {Celegans: WBGene00004950, sox-3, SOX (Mammalian SRY box) family, [Score=107, Expect=5e-28]} {Smed: dd_Smed_v6_36521_0_1, dd_Smed_v6_36521_0_1, [Score=105, Expect=1e-26]} {RNA1310_54737.1} {RNA815_42176}
13. MligTC455_08987 16 0.34 Mlig455_069457

Neo: -

Age: -

 SLC18A2 0.951 - - - 0.951 - - Mlig455_069457 {REF} {Length: 1774} {Pfam: Major Facilitator Superfamily [PF07690.18, score=103.9]} {Human: ENSG00000165646, SLC18A2, solute carrier family 18 member A2, [Score=276, Expect=4e-86]} {Mouse: ENSMUSG00000025094, Slc18a2, solute carrier family 18 (vesicular monoamine), member 2, [Score=280, Expect=4e-88]} {Dmel: FBgn0260964, Vmat, Vesicular monoamine transporter, [Score=267, Expect=3e-82]} {Celegans: WBGene00000295, cat-1, [Score=240, Expect=2e-73]} {Smed: dd_Smed_v6_16043_0_1, dd_Smed_v6_16043_0_1, [Score=258, Expect=8e-80]}
14. MligTC455_04681 43 0.89 Mlig455_024946

Neo: -

Age: Down-Up-Up

 SLC13A2 0.95 - - - 0.950 - - Mlig455_024946 {REF} {Length: 2102} {Pfam: Sodium:sulfate symporter transmembrane region [PF00939.21, score=196.7]; Citrate transporter [PF03600.18, score=64.6]} {Human: ENSG00000007216, SLC13A2, solute carrier family 13 member 2, [Score=254, Expect=3e-76]; ENSG00000158296, SLC13A3, solute carrier family 13 member 3, [Score=253, Expect=2e-75]; ENSG00000141485, SLC13A5, solute carrier family 13 member 5, [Score=245, Expect=8e-73]} {Mouse: ENSMUSG00000001095, Slc13a2, solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, [Score=258, Expect=1e-77]} {Dmel: FBgn0036816, Indy, I'm not dead yet, [Score=209, Expect=6e-60]} {Celegans: WBGene00003517, nac-1, Sodium-dependent low-affinity dicarboxylate transporter 1, [Score=222, Expect=1e-64]} {Smed: dd_Smed_v6_12964_0_8, dd_Smed_v6_12964_0_8, [Score=240, Expect=2e-71]} {RNA1509_34369} {RNA1310_13750.2} {RNA815_9737}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA