M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_52273

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_52273 134 2.79 Mlig455_014598

Neo: -

Age: Up-Down-Down

 Mlig455_014598 {REF} {Length: 2227} {NoTransDecoderORF} {RNA1509_27455} {RNA1310_27102.1, RNA1509_27455} {RNA1509_27455, RNA815_38357}

Cumulative graph for MligTC455_52273

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.846 2.028 0.47822 1.00000
RegionR2 0.196 2.028 0.78161 1.00000
RegionR3 -0.142 2.028 0.89375 1.00000
RegionR4 0.799 2.028 0.47473 0.80252
RegionR5 -1.992 2.028 0.99942 1.00000
RegionR6 -0.563 2.028 0.96297 1.00000
RegionR7 2.557 2.028 0.01043 0.17599
RegionR8 2.991 2.028 0.00964 0.18503

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.531 2.028 0.99996 1.00000
RegenerationR2 1.23 2.028 0.09934 0.49893
RegenerationR3 1 2.028 0.28153 0.71337
RegenerationR4 0.293 2.028 0.74221 0.96827
RegenerationR5 3.001 2.028 0.00179 0.07301
RegenerationR6 1.413 2.028 0.16231 0.49135
RegenerationBL -1.165 2.028 0.30889 0.67404
RegenerationTP 0.008 2.028 0.99829 1.00000


Genes with expression patterns similar to MligTC455_52273

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_52273 134 2.79 Mlig455_014598

Neo: -

Age: Up-Down-Down

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_014598 {REF} {Length: 2227} {NoTransDecoderORF} {RNA1509_27455} {RNA1310_27102.1, RNA1509_27455} {RNA1509_27455, RNA815_38357}
2. MligTC455_19444 2615 54.48 Mlig455_002765, Mlig455_050252

Neo: Irradiation

Age: Down-Up-Down, logFC(26M/2M)=-0.567

 1.753 0.962 - - - 0.791 -

Mlig455_002765 {REF} {Length: 718} {RNA1509_22419} {RNA1310_5535, RNA1509_22419} {RNA1509_22419, RNA815_6435}

Mlig455_050252 {REF} {Length: 956} {RNA1509_22419} {RNA1310_5535} {RNA815_6435}
3. MligTC455_40810 75 1.56 Mlig455_009123, Mlig455_021293

Neo: -

Age: Up-Down-Down

 NYNRIN 1.699 - - 0.961 - - 0.738

Mlig455_009123 {REF} {Length: 6436} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=110.4]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=69.5]; Integrase zinc binding domain [PF17921.3, score=53.2]; Integrase core domain [PF00665.28, score=44.5]; H2C2 zinc finger [PF09337.12, score=20.6]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=73.2, Expect=3e-12]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=68.6, Expect=5e-11]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=314, Expect=2e-90]} {RNA1509_37150} {RNA1310_27350} {RNA815_53591}

Mlig455_021293 {REF} {Length: 3539} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=110.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.9]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=90.7]; Integrase zinc binding domain [PF17921.3, score=53.3]; Integrase core domain [PF00665.28, score=44.5]; H2C2 zinc finger [PF09337.12, score=20.7]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=75.1, Expect=8e-13]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=70.1, Expect=2e-11]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=313, Expect=3e-90]} {RNA1509_24311} {RNA1310_18657.1} {RNA815_49943}
4. MligTC455_52769 73 1.51 Mlig455_005296

Neo: -

Age: Up-Down-Up

 1.666 - - - - 0.955 0.711 Mlig455_005296 {REF} {Length: 1157} {TRANSSPLICED} {RNA1509_54814} {RNA1310_30336.1} {RNA815_6347.1}
5. MligTC455_06325 70 1.46 Mlig455_044796

Neo: -

Age: logFC(26M/2M)=-0.321

Region-enriched R8: 5.027/0.00229
Region-enriched R7: 4.676/0.00041

 SVEP1 0.971 0.971 - - - - - Mlig455_044796 {REF} {Length: 2733} {TRANSSPLICED} {Pfam: EGF-like domain [PF00008.29, score=37.1]; Human growth factor-like EGF [PF12661.9, score=29.1]; EGF-like domain [PF07974.15, score=22.7]} {Human: ENSG00000165124, SVEP1, sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, [Score=104, Expect=4e-22]; ENSG00000235396, NOTCH4, notch 4, [Score=101, Expect=2e-21]; ENSG00000223355, NOTCH4, notch 4, [Score=101, Expect=2e-21]; ENSG00000204301, NOTCH4, notch 4, [Score=101, Expect=2e-21]; ENSG00000234876, NOTCH4, notch 4, [Score=101, Expect=2e-21]; ENSG00000232339, NOTCH4, notch 4, [Score=101, Expect=2e-21]; ENSG00000206312, NOTCH4, notch 4, [Score=101, Expect=2e-21]} {Mouse: ENSMUSG00000026923, Notch1, notch 1, [Score=94.4, Expect=3e-19]} {Dmel: FBgn0051665, wry, weary, [Score=116, Expect=2e-26]} {Celegans: WBGene00003001, lin-12, [Score=82.8, Expect=5e-16]} {Smed: dd_Smed_v6_7067_0_1, dd_Smed_v6_7067_0_1, [Score=104, Expect=7e-23]} {RNA1509_13430} {RNA1310_7596.1} {RNA815_13746}
6. MligTC455_42325 270 5.62 Mlig455_016673

Neo: -

Age: Down-Up-Up

Region-enriched R7: 4.030/0.00009

 EVX1 0.971 0.971 - - - - - Mlig455_016673 {REF} {Length: 1449} {Pfam: Homeodomain [PF00046.31, score=74.8]} {Human: ENSG00000106038, EVX1, even-skipped homeobox 1, [RH, Score=131, Expect=1e-34]; ENSG00000174279, EVX2, even-skipped homeobox 2, [RH, Score=130, Expect=7e-34]} {Mouse: ENSMUSG00000005503, Evx1, even-skipped homeobox 1, [RH, Score=131, Expect=1e-34]; ENSMUSG00000001815, Evx2, even-skipped homeobox 2, [RH, Score=131, Expect=3e-34]} {Dmel: FBgn0000606, eve, even skipped, [RH, Score=136, Expect=4e-37]} {Celegans: WBGene00006873, vab-7, Homeobox protein vab-7, [RH, Score=110, Expect=3e-28]} {Smed: dd_Smed_v6_18147_0_1, dd_Smed_v6_18147_0_1, [RH, Score=117, Expect=2e-32]} {RNA1509_36832} {RNA1310_42544, RNA1509_36832} {RNA1509_36832, RNA815_33148}
7. MligTC455_54178 434 9.04 Mlig455_020796

Neo: -

Age: Down-Down-Up

Region-enriched R7: 1.941/0.00397

 0.97 0.970 - - - - - Mlig455_020796 {REF} {Length: 2879} {Smed: dd_Smed_v6_5057_0_1, dd_Smed_v6_5057_0_1, [RH, Score=91.7, Expect=4e-20]} {RNA1509_10580} {RNA1310_9366, RNA1509_10580} {RNA1509_10580, RNA815_2566}
8. MligTC455_09828 80 1.67 Mlig455_052764

Neo: -

Age: -

 0.963 - - 0.963 - - - Mlig455_052764 {REF} {Length: 1206} {NoTransDecoderORF} {RNA1310_17510.1} {RNA815_9674}
9. MligTC455_24295 106 2.2 Mlig455_004579

Neo: -

Age: Down-Up-Up

 0.963 - - - - 0.963 - Mlig455_004579 {REF} {Length: 2376} {TRANSSPLICED} {Pfam: Protein of unknown function, DUF547 [PF04784.16, score=122.1]; Glutaredoxin [PF00462.26, score=24.9]} {Celegans: WBGene00012869, Y45F10A.7, [RH, Score=189, Expect=2e-53]} {RNA1310_53091} {RNA815_39737}
10. MligTC455_50571 198 4.12 Mlig455_000342

Neo: -

Age: -

 0.963 - - 0.963 - - - Mlig455_000342 {REF} {Length: 1957} {NoTransDecoderORF} {RNA1509_45664} {RNA1310_34272, RNA1509_45664} {RNA1509_45664, RNA815_43019}
11. MligTC455_41024 246 5.13 Mlig455_056037

Neo: -

Age: Up-Down-Down

 0.961 0.961 - - - - - Mlig455_056037 {REF} {Length: 1624} {Pfam: Toxin SymE, type I toxin-antitoxin system [PF08845.12, score=22.3]} {RNA1310_70391.1} {RNA815_43265}
12. MligTC455_12187 171 3.55 Mlig455_035674

Neo: -

Age: logFC(26M/2M)=0.689

 HSD17B8 0.959 - - 0.959 - - - Mlig455_035674 {REF} {Length: 2526} {Pfam: Enoyl-(Acyl carrier protein) reductase [PF13561.8, score=170.4]; short chain dehydrogenase [PF00106.27, score=131.4]; KR domain [PF08659.12, score=29.1]} {Human: ENSG00000112474, HSD17B8, hydroxysteroid 17-beta dehydrogenase 8, [RH, Score=105, Expect=6e-26]; ENSG00000228357, HSD17B8, hydroxysteroid 17-beta dehydrogenase 8, [RH, Score=105, Expect=6e-26]; ENSG00000232357, HSD17B8, hydroxysteroid 17-beta dehydrogenase 8, [RH, Score=105, Expect=6e-26]; ENSG00000204228, HSD17B8, hydroxysteroid 17-beta dehydrogenase 8, [RH, Score=105, Expect=6e-26]; ENSG00000228712, HSD17B8, hydroxysteroid 17-beta dehydrogenase 8, [RH, Score=105, Expect=6e-26]; ENSG00000225312, HSD17B8, hydroxysteroid 17-beta dehydrogenase 8, [RH, Score=105, Expect=6e-26]} {Mouse: ENSMUSG00000030825, Hsd17b14, hydroxysteroid (17-beta) dehydrogenase 14, [Score=123, Expect=1e-32]} {Dmel: FBgn0040349, CG3699, [Score=109, Expect=6e-28]} {Celegans: WBGene00000974, dhs-11, DeHydrogenases, Short chain, [Score=93.2, Expect=4e-22]} {Smed: dd_Smed_v6_2290_0_1, dd_Smed_v6_2290_0_1, [Score=97.8, Expect=1e-23]} {RNA1509_6455} {RNA1310_4640} {RNA815_8535.1}
13. MligTC455_16387 315 6.57 Mlig455_017640, Mlig455_058958

Neo: -

Age: Down-Up-Down

 ZMYM1 0.958 0.958 - - - - -

Mlig455_017640 {REF} {Length: 1887} {Pfam: Domain of unknown function (DUF4371) [PF14291.8, score=72.8]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=23.9]} {Human: ENSG00000197056, ZMYM1, zinc finger MYM-type containing 1, [Score=63.9, Expect=2e-10]} {Mouse: ENSMUSG00000043872, Zmym1, zinc finger, MYM domain containing 1, [Score=53.9, Expect=2e-07]} {Smed: dd_Smed_v6_27814_0_2, dd_Smed_v6_27814_0_2, [Score=98.6, Expect=1e-24]} {RNA1509_38621} {RNA1310_17933.1} {RNA815_25414.1}

Mlig455_058958 {REF} {Length: 2000} {RNA1509_38621} {RNA1310_17933.1} {RNA815_25414.1}
14. MligTC455_40018 295 6.15 Mlig455_037646, Mlig455_069914

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.048

Region-enriched R8: 4.445/0.00001
Region-enriched R7: 3.788/0.00007

 AC243734.1, CHRNA2 0.957 0.957 - - - - -

Mlig455_037646 {REF} {Length: 2101} {TRANSSPLICED} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=46.2]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=27.0]} {Human: ENSG00000120903, CHRNA2, cholinergic receptor nicotinic alpha 2 subunit, [Score=68.9, Expect=6e-12]; ENSG00000101204, CHRNA4, cholinergic receptor nicotinic alpha 4 subunit, [Score=65.5, Expect=8e-11]} {Mouse: ENSMUSG00000035594, Chrna5, cholinergic receptor, nicotinic, alpha polypeptide 5, [Score=75.5, Expect=3e-14]; ENSMUSG00000022041, Chrna2, cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal), [Score=73.2, Expect=2e-13]} {Dmel: FBgn0032151, nAChRalpha6, nicotinic Acetylcholine Receptor alpha6, [Score=82.8, Expect=9e-17]} {Celegans: WBGene00006774, unc-38, Acetylcholine receptor subunit alpha-type unc-38, [Score=71.2, Expect=4e-13]} {Smed: dd_Smed_v6_8486_0_1, dd_Smed_v6_8486_0_1, [Score=78.2, Expect=2e-15]} {RNA1509_50033} {RNA1310_22440} {RNA815_15508}

Mlig455_069914 {REF} {Length: 3748} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=68.5]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=60.3]} {Human: ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=108, Expect=5e-25]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=108, Expect=9e-25]; ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=108, Expect=5e-25]} {Mouse: ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=107, Expect=1e-24]} {Dmel: FBgn0086778, nAChRalpha7, nicotinic Acetylcholine Receptor alpha7, [Score=99.4, Expect=5e-22]} {Celegans: WBGene00000951, deg-3, Acetylcholine receptor subunit alpha-type deg-3, [Score=94.0, Expect=3e-20]} {Smed: dd_Smed_v6_23922_0_1, dd_Smed_v6_23922_0_1, [Score=113, Expect=7e-27]} {RNA1509_50033} {RNA1310_16096, RNA1509_50033} {RNA1509_50033, RNA815_15508}
15. MligTC455_50558 173 3.61 Mlig455_005169

Neo: -

Age: Up-Up-Down

 ELP2 0.956 - - 0.956 - - - Mlig455_005169 {REF} {Length: 3996} {Pfam: WD domain, G-beta repeat [PF00400.34, score=78.5]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=26.4]} {Human: ENSG00000134759, ELP2, elongator acetyltransferase complex subunit 2, [RH, Score=317, Expect=3e-96]} {Mouse: ENSMUSG00000024271, Elp2, elongator acetyltransferase complex subunit 2, [RH, Score=315, Expect=6e-96]} {Dmel: FBgn0033540, Elp2, Elongator complex protein 2, [Score=339, Expect=1e-105]} {Celegans: WBGene00013738, elpc-2, ELongator complex Protein Component, [RH, Score=255, Expect=2e-74]} {Smed: dd_Smed_v6_8224_0_1, dd_Smed_v6_8224_0_1, [RH, Score=260, Expect=2e-76]} {RNA1509_24068} {RNA1310_6574.1, RNA1509_24068} {RNA1509_24068, RNA815_5329}
16. MligTC455_51246 58 1.2 Mlig455_014016

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_014016 {REF} {Length: 2834} {NoTransDecoderORF} {RNA1509_57004} {RNA1310_22299} {RNA815_15623}
17. MligTC455_26302 103 2.15 Mlig455_042038

Neo: -

Age: -

 0.954 - - 0.954 - - - Mlig455_042038 {REF} {Length: 2829} {TRANSSPLICED} {Pfam: Soluble NSF attachment protein, SNAP [PF14938.8, score=175.4]; Tetratricopeptide repeat [PF13424.8, score=29.5]} {Celegans: WBGene00017016, snap-1, SNAP (Soluble NSF Attachment Protein) homolog, [Score=130, Expect=2e-35]} {Smed: dd_Smed_v6_2480_0_1, dd_Smed_v6_2480_0_1, [Score=113, Expect=6e-29]} {RNA1509_29458} {RNA1310_28569} {RNA815_7911}
18. MligTC455_22875 197 4.1 Mlig455_031908, Mlig455_045532, Mlig455_049396

Neo: -

Age: -

 0.953 - - - - 0.953 -

Mlig455_031908 {REF} {Length: 388} {NoTransDecoderORF} {RNA1509_13897} {RNA1310_25119} {RNA815_11593}

Mlig455_045532 {REF} {Length: 924} {NoTransDecoderORF} {RNA1509_13897} {RNA1310_19938.1} {RNA815_11593}

Mlig455_049396 {REF} {Length: 738} {NoTransDecoderORF} {RNA1509_13897} {RNA1310_19938.1} {RNA815_11593}
19. MligTC455_28684 179 3.74 Mlig455_027569

Neo: -

Age: Down-Up-Up

 0.953 - - - - 0.953 - Mlig455_027569 {REF} {Length: 1247} {RNA1509_49958} {RNA1310_47608, RNA1509_49958} {RNA1509_49958, RNA815_33601}
20. MligTC455_42234 27 0.57 Mlig455_050011

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_050011 {REF} {Length: 2713} {Pfam: PHD-finger [PF00628.31, score=19.0]} {RNA1509_29965} {RNA1310_21136.1}
21. MligTC455_00601 133 2.77 Mlig455_054054

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_054054 {REF} {Length: 2328} {RNA1509_1755} {RNA1310_2220.1} {RNA815_703.1}
22. MligTC455_12693 100 2.08 Mlig455_046969

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_046969 {REF} {Length: 967} {NoTransDecoderORF} {RNA1509_27679} {RNA1310_48137} {RNA815_1247.1}
23. MligTC455_37221 155 3.24 Mlig455_053581

Neo: -

Age: -

Region-enriched R8: 6.080/0.00000
Region-enriched R7: 4.687/0.00015

 FMNL3 0.952 0.952 - - - - - Mlig455_053581 {REF} {Length: 3204} {Pfam: Formin Homology 2 Domain [PF02181.25, score=166.7]} {Human: ENSG00000161791, FMNL3, formin like 3, [Score=117, Expect=3e-26]; ENSG00000157827, FMNL2, formin like 2, [Score=117, Expect=6e-26]} {Mouse: ENSMUSG00000055805, Fmnl1, formin-like 1, [Score=127, Expect=2e-29]} {Dmel: FBgn0267795, Frl, Formin-like, [Score=103, Expect=4e-22]} {Celegans: WBGene00021698, frl-1, FRL (Formin Related gene in Leukocytes) homolog, [Score=84.7, Expect=2e-16]} {Smed: dd_Smed_v6_3917_0_2, dd_Smed_v6_3917_0_2, [Score=79.0, Expect=1e-14]} {RNA1509_29857} {RNA1310_4919} {RNA815_9351}
24. MligTC455_40223 172 3.59 Mlig455_016264

Neo: -

Age: -

Region-enriched R8: 3.704/0.01076

 CHRNA10 0.951 - - 0.951 - - - Mlig455_016264 {REF} {Length: 4782} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=169.5]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=109.0]} {Human: ENSG00000129749, CHRNA10, cholinergic receptor nicotinic alpha 10 subunit, [Score=230, Expect=2e-68]; ENSG00000147432, CHRNB3, cholinergic receptor nicotinic beta 3 subunit, [Score=225, Expect=1e-66]} {Mouse: ENSMUSG00000031492, Chrnb3, cholinergic receptor, nicotinic, beta polypeptide 3, [Score=233, Expect=9e-70]} {Dmel: FBgn0032151, nAChRalpha6, nicotinic Acetylcholine Receptor alpha6, [Score=236, Expect=2e-70]} {Celegans: WBGene00000060, acr-21, AcetylCholine Receptor, [Score=215, Expect=6e-63]} {Smed: dd_Smed_v6_31300_0_1, dd_Smed_v6_31300_0_1, [Score=280, Expect=9e-87]} {RNA1509_35668} {RNA1310_11720.1} {RNA815_6827}
25. MligTC455_50328 128 2.66 Mlig455_039843

Neo: -

Age: -

 SCNN1B 0.95 - - 0.950 - - - Mlig455_039843 {REF} {Length: 2793} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=206.6]} {Human: ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=69.3, Expect=1e-11]} {Mouse: ENSMUSG00000000216, Scnn1g, sodium channel, nonvoltage-gated 1 gamma, [Score=58.9, Expect=1e-08]; ENSMUSG00000030873, Scnn1b, sodium channel, nonvoltage-gated 1 beta, [Score=57.4, Expect=4e-08]} {Celegans: WBGene00006832, unc-105, Degenerin-like protein unc-105, [Score=75.5, Expect=8e-14]} {Smed: dd_Smed_v6_23028_0_1, dd_Smed_v6_23028_0_1, [RH, Score=366, Expect=3e-118]} {RNA1509_37054} {RNA1310_10450, RNA1509_37054} {RNA1509_37054, RNA815_17111}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA