TomoSeq data search

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Results for MligTC455_52396

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_52396

1387

28.90

Mlig455_003700, Mlig455_003743, Mlig455_003906

Neo: Irradiation

Age: -

TBC1D31

Mlig455_003700 {REF} {Length: 4125} {Pfam: Rab-GTPase-TBC domain [PF00566.20, score=32.7]; WD domain, G-beta repeat [PF00400.34, score=27.0]} {Human: ENSG00000156787, TBC1D31, TBC1 domain family member 31, [RH, Score=427, Expect=4e-134]} {Mouse: ENSMUSG00000022364, Tbc1d31, TBC1 domain family, member 31, [RH, Score=424, Expect=1e-132]} {Dmel: FBgn0035073, CG16896, [RH, Score=189, Expect=4e-49]} {RNA1509_5616} {RNA1310_7289} {RNA815_1732}

Mlig455_003743 {REF} {Length: 4634} {Pfam: Rab-GTPase-TBC domain [PF00566.20, score=32.4]; WD domain, G-beta repeat [PF00400.34, score=27.4]} {Human: ENSG00000156787, TBC1D31, TBC1 domain family member 31, [RH, Score=428, Expect=1e-132]} {Mouse: ENSMUSG00000022364, Tbc1d31, TBC1 domain family, member 31, [RH, Score=422, Expect=3e-131]} {Dmel: FBgn0035073, CG16896, [RH, Score=189, Expect=6e-49]} {RNA1509_35761, RNA1509_5616} {RNA1310_7289, RNA1509_35761} {RNA1509_35761, RNA815_1732}

Mlig455_003906 {REF} {Length: 4759} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=44.6]; Rab-GTPase-TBC domain [PF00566.20, score=32.1]; WD domain, G-beta repeat [PF00400.34, score=27.2]} {Human: ENSG00000156787, TBC1D31, TBC1 domain family member 31, [RH, Score=428, Expect=2e-131]} {Mouse: ENSMUSG00000022364, Tbc1d31, TBC1 domain family, member 31, [RH, Score=422, Expect=3e-130]} {Dmel: FBgn0035073, CG16896, [RH, Score=190, Expect=4e-49]} {RNA1509_5616} {RNA1310_7289} {RNA815_1732}

Cumulative graph for MligTC455_52396

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.623	5.101	0.53398	1.00000
RegionR2	-0.188	5.101	0.71853	1.00000
RegionR3	-0.073	5.101	0.86744	1.00000
RegionR4	1.173	5.101	0.01844	0.09619
RegionR5	0.757	5.101	0.04930	0.18560
RegionR6	0.076	5.101	0.85912	1.00000
RegionR7	-0.436	5.101	0.37086	1.00000
RegionR8	-0.685	5.101	0.25452	0.87384

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.808	5.101	0.51801	1.00000
RegenerationR2	0.335	5.101	0.48479	0.86531
RegenerationR3	-0.02	5.101	0.96795	1.00000
RegenerationR4	-0.456	5.101	0.39836	0.81232
RegenerationR5	-0.431	5.101	0.38037	0.78689
RegenerationR6	-0.189	5.101	0.71702	0.93373
RegenerationBL	0.92	5.101	0.06669	0.30086
RegenerationTP	-0.69	5.101	0.26523	0.71321

Genes with expression patterns similar to MligTC455_52396

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_52396	1387	28.9	Mlig455_003700, Mlig455_003743, Mlig455_003906	Neo: Irradiation Age: -	TBC1D31	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_003700 {REF} {Length: 4125} {Pfam: Rab-GTPase-TBC domain [PF00566.20, score=32.7]; WD domain, G-beta repeat [PF00400.34, score=27.0]} {Human: ENSG00000156787, TBC1D31, TBC1 domain family member 31, [RH, Score=427, Expect=4e-134]} {Mouse: ENSMUSG00000022364, Tbc1d31, TBC1 domain family, member 31, [RH, Score=424, Expect=1e-132]} {Dmel: FBgn0035073, CG16896, [RH, Score=189, Expect=4e-49]} {RNA1509_5616} {RNA1310_7289} {RNA815_1732} Mlig455_003743 {REF} {Length: 4634} {Pfam: Rab-GTPase-TBC domain [PF00566.20, score=32.4]; WD domain, G-beta repeat [PF00400.34, score=27.4]} {Human: ENSG00000156787, TBC1D31, TBC1 domain family member 31, [RH, Score=428, Expect=1e-132]} {Mouse: ENSMUSG00000022364, Tbc1d31, TBC1 domain family, member 31, [RH, Score=422, Expect=3e-131]} {Dmel: FBgn0035073, CG16896, [RH, Score=189, Expect=6e-49]} {RNA1509_35761, RNA1509_5616} {RNA1310_7289, RNA1509_35761} {RNA1509_35761, RNA815_1732} Mlig455_003906 {REF} {Length: 4759} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=44.6]; Rab-GTPase-TBC domain [PF00566.20, score=32.1]; WD domain, G-beta repeat [PF00400.34, score=27.2]} {Human: ENSG00000156787, TBC1D31, TBC1 domain family member 31, [RH, Score=428, Expect=2e-131]} {Mouse: ENSMUSG00000022364, Tbc1d31, TBC1 domain family, member 31, [RH, Score=422, Expect=3e-130]} {Dmel: FBgn0035073, CG16896, [RH, Score=190, Expect=4e-49]} {RNA1509_5616} {RNA1310_7289} {RNA815_1732}
2.	MligTC455_13219	500	10.42	Mlig455_035258	Neo: - Age: -	CTU1	1.756	-	-	-	0.975	-	0.781	Mlig455_035258 {REF} {Length: 2034} {TRANSSPLICED} {Pfam: Zinc-ribbon [PF16503.7, score=56.0]; PP-loop family [PF01171.22, score=51.6]} {Human: ENSG00000142544, CTU1, cytosolic thiouridylase subunit 1, [RH, Score=313, Expect=6e-105]} {Mouse: ENSMUSG00000038888, Ctu1, cytosolic thiouridylase subunit 1, [RH, Score=314, Expect=3e-104]} {Dmel: FBgn0033375, CG8078, [RH, Score=411, Expect=8e-144]} {Celegans: WBGene00017928, tut-1, Cytoplasmic tRNA 2-thiolation protein 1, [RH, Score=388, Expect=3e-134]} {Smed: dd_Smed_v6_9291_0_1, dd_Smed_v6_9291_0_1, [RH, Score=409, Expect=7e-143]} {RNA1509_16428} {RNA1310_13891.2} {RNA815_8994.1}
3.	MligTC455_15942	908	18.92	Mlig455_035020, Mlig455_053446	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.273	NR1I2	0.964	-	-	-	0.964	-	-	Mlig455_035020 {REF} {Length: 4424} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=73.8]} {Human: ENSG00000144852, NR1I2, nuclear receptor subfamily 1 group I member 2, [Score=87.4, Expect=1e-17]} {Mouse: ENSMUSG00000022809, Nr1i2, nuclear receptor subfamily 1, group I, member 2, [Score=84.3, Expect=6e-17]; ENSMUSG00000022479, Vdr, vitamin D (1,25-dihydroxyvitamin D3) receptor, [Score=81.3, Expect=6e-16]} {Dmel: FBgn0003720, tll, tailless, [Score=82.0, Expect=3e-16]} {Celegans: WBGene00000908, daf-12, Nuclear hormone receptor family member daf-12, [Score=99.4, Expect=2e-21]} {Smed: dd_Smed_v6_5200_0_1, dd_Smed_v6_5200_0_1, [Score=91.3, Expect=3e-19]} {RNA1509_8358} {RNA1310_9876} {RNA815_22592} Mlig455_053446 {REF} {Length: 4372} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=73.7]} {Human: ENSG00000144852, NR1I2, nuclear receptor subfamily 1 group I member 2, [Score=87.0, Expect=2e-17]} {Mouse: ENSMUSG00000022809, Nr1i2, nuclear receptor subfamily 1, group I, member 2, [Score=84.0, Expect=9e-17]; ENSMUSG00000022479, Vdr, vitamin D (1,25-dihydroxyvitamin D3) receptor, [Score=80.9, Expect=8e-16]; ENSMUSG00000002393, Nr2f6, nuclear receptor subfamily 2, group F, member 6, [Score=80.1, Expect=1e-15]} {Dmel: FBgn0003720, tll, tailless, [Score=82.4, Expect=3e-16]} {Celegans: WBGene00000908, daf-12, Nuclear hormone receptor family member daf-12, [Score=99.8, Expect=1e-21]} {Smed: dd_Smed_v6_5200_0_1, dd_Smed_v6_5200_0_1, [Score=91.3, Expect=2e-19]} {RNA1509_8358} {RNA1310_9876} {RNA815_22592}
4.	MligTC455_01387	262	5.45	Mlig455_009872	Neo: - Age: Down-Up-Up	SOX14	0.962	-	-	-	0.962	-	-	Mlig455_009872 {REF} {Length: 3140} {Pfam: HMG (high mobility group) box [PF00505.21, score=95.1]; HMG-box domain [PF09011.12, score=40.1]} {Human: ENSG00000168875, SOX14, SRY-box 14, [RH, Score=181, Expect=1e-53]; ENSG00000125285, SOX21, SRY-box 21, [RH, Score=178, Expect=4e-52]} {Mouse: ENSMUSG00000053747, Sox14, SRY (sex determining region Y)-box 14, [RH, Score=181, Expect=7e-54]; ENSMUSG00000061517, Sox21, SRY (sex determining region Y)-box 21, [RH, Score=178, Expect=3e-52]} {Dmel: FBgn0042630, Sox21b, [RH, Score=174, Expect=8e-48]} {Celegans: WBGene00004950, sox-3, SOX (Mammalian SRY box) family, [RH, Score=168, Expect=3e-49]} {Smed: dd_Smed_v6_36521_0_1, dd_Smed_v6_36521_0_1, [RH, Score=177, Expect=1e-51]} {RNA1509_35476} {RNA1310_17227} {RNA815_15861.1}
5.	MligTC455_17642	473	9.85	Mlig455_053823	Neo: - Age: -	ME1	0.962	-	-	-	-	0.962	-	Mlig455_053823 {REF} {Length: 4736} {TRANSSPLICED} {Pfam: Malic enzyme, NAD binding domain [PF03949.17, score=307.8]; Malic enzyme, N-terminal domain [PF00390.21, score=257.1]} {Human: ENSG00000065833, ME1, malic enzyme 1, [RH, Score=682, Expect=0.0]; ENSG00000151376, ME3, malic enzyme 3, [RH, Score=676, Expect=0.0]} {Mouse: ENSMUSG00000030621, Me3, malic enzyme 3, NADP(+)-dependent, mitochondrial, [RH, Score=687, Expect=0.0]; ENSMUSG00000032418, Me1, malic enzyme 1, NADP(+)-dependent, cytosolic, [RH, Score=676, Expect=0.0]} {Dmel: FBgn0029155, Men-b, Malic enzyme b, [RH, Score=652, Expect=0.0]} {Celegans: WBGene00012983, men-1, Malic enzyme, [RH, Score=605, Expect=0.0]} {Smed: dd_Smed_v6_2140_0_2, dd_Smed_v6_2140_0_2, [RH, Score=650, Expect=0.0]} {RNA1509_4479} {RNA1310_12690.1} {RNA815_3699}
6.	MligTC455_46054	113	2.34	Mlig455_047566	Neo: - Age: -		0.961	-	-	-	0.961	-	-	Mlig455_047566 {REF} {Length: 3957} {RNA1509_22963} {RNA1310_2801, RNA1509_22963} {RNA1509_22963, RNA815_21724}
7.	MligTC455_27481	495	10.31	Mlig455_052751	Neo: - Age: logFC(26M/2M)=-0.237	CNTLN	0.96	-	-	-	-	0.960	-	Mlig455_052751 {REF} {Length: 5068} {TRANSSPLICED} {Pfam: Flagella accessory protein C (FlaC) [PF05377.13, score=20.7]} {Human: ENSG00000044459, CNTLN, centlein, [RH, Score=109, Expect=2e-23]} {Mouse: ENSMUSG00000038070, Cntln, centlein, centrosomal protein, [RH, Score=108, Expect=1e-23]} {Dmel: FBgn0040232, cmet, CENP-meta, [Score=50.8, Expect=7e-06]} {Smed: dd_Smed_v6_9882_0_1, dd_Smed_v6_9882_0_1, [RH, Score=136, Expect=2e-32]} {RNA1509_44233, RNA1509_8651} {RNA1310_8336.1, RNA1509_44233, RNA1509_8651} {RNA1509_44233, RNA1509_8651, RNA815_2280.1}
8.	MligTC455_25384	164	3.42	Mlig455_017652	Neo: - Age: - Regeneration-enriched R6: 4.225 Regeneration-enriched R3: 3.829 Regeneration-enriched R5: 3.262 Regeneration-enriched R4: 3.234	SF3B3	0.957	-	-	-	-	-	0.957	Mlig455_017652 {REF} {Length: 4056} {Pfam: Mono-functional DNA-alkylating methyl methanesulfonate N-term [PF10433.11, score=591.2]; CPSF A subunit region [PF03178.17, score=274.4]} {Human: ENSG00000189091, SF3B3, splicing factor 3b subunit 3, [RH, Score=1840, Expect=0.0]} {Mouse: ENSMUSG00000033732, Sf3b3, splicing factor 3b, subunit 3, [RH, Score=1841, Expect=0.0]} {Dmel: FBgn0035162, Sf3b3, Splicing factor 3b subunit 3, [RH, Score=1713, Expect=0.0]} {Celegans: WBGene00019323, teg-4, Tumorous Enhancer of Glp-1(Gf), [RH, Score=1405, Expect=0.0]} {Smed: dd_Smed_v6_4241_0_1, dd_Smed_v6_4241_0_1, [RH, Score=1600, Expect=0.0]} {RNA1509_25911} {RNA1310_2503} {RNA815_4779}
9.	MligTC455_21096	421	8.77	Mlig455_014961	Neo: Int S/G2/M Age: Up-Down-Down	BTBD2	0.956	-	-	-	0.956	-	-	Mlig455_014961 {REF} {Length: 2694} {TRANSSPLICED} {Pfam: BTB/POZ domain [PF00651.33, score=87.1]; BTB And C-terminal Kelch [PF07707.17, score=22.2]} {Human: ENSG00000133243, BTBD2, BTB domain containing 2, [Score=105, Expect=1e-23]; ENSG00000064726, BTBD1, BTB domain containing 1, [Score=102, Expect=5e-23]} {Mouse: ENSMUSG00000003344, Btbd2, BTB (POZ) domain containing 2, [Score=104, Expect=1e-23]; ENSMUSG00000025103, Btbd1, BTB (POZ) domain containing 1, [Score=100, Expect=2e-22]} {Dmel: FBgn0262871, lute, [Score=89.7, Expect=9e-19]} {Celegans: WBGene00006415, tag-30, [Score=90.9, Expect=3e-19]} {Smed: dd_Smed_v6_7778_0_1, dd_Smed_v6_7778_0_1, [Score=64.7, Expect=4e-11]} {RNA1509_25011, RNA1509_33923, RNA1509_53477, RNA1509_58365} {RNA1310_22545, RNA1509_25011, RNA1509_53477, RNA1509_58365} {RNA1509_25011, RNA1509_53477, RNA1509_58365, RNA815_19917}
10.	MligTC455_52963	94	1.95	Mlig455_019424, Mlig455_058390	Neo: Int S/G2/M Age: -	ZC3H3	0.951	-	-	-	-	-	0.951	Mlig455_019424 {REF} {Length: 3114} {TRANSSPLICED} {Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=23.1]} {Human: ENSG00000014164, ZC3H3, zinc finger CCCH-type containing 3, [RH, Score=95.9, Expect=7e-21]} {Mouse: ENSMUSG00000075600, Zc3h3, zinc finger CCCH type containing 3, [RH, Score=100, Expect=2e-22]} {Dmel: FBgn0035900, ZC3H3, [RH, Score=67.0, Expect=9e-12]} {RNA1509_37082} {RNA1310_10963.2} {RNA815_18673} Mlig455_058390 {REF} {Length: 2783} {TRANSSPLICED} {Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=24.1]} {Human: ENSG00000014164, ZC3H3, zinc finger CCCH-type containing 3, [RH, Score=96.3, Expect=6e-21]} {Mouse: ENSMUSG00000075600, Zc3h3, zinc finger CCCH type containing 3, [RH, Score=99.8, Expect=3e-22]} {Dmel: FBgn0035900, ZC3H3, [RH, Score=67.4, Expect=6e-12]} {RNA1509_34328} {RNA1310_10963.2} {RNA815_18673}

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