TomoSeq data search

Data search

Results for MligTC455_52963

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_52963

94

1.95

Mlig455_019424, Mlig455_058390

Neo: Int S/G2/M

Age: -

ZC3H3

Mlig455_019424 {REF} {Length: 3114} {TRANSSPLICED} {Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=23.1]} {Human: ENSG00000014164, ZC3H3, zinc finger CCCH-type containing 3, [RH, Score=95.9, Expect=7e-21]} {Mouse: ENSMUSG00000075600, Zc3h3, zinc finger CCCH type containing 3, [RH, Score=100, Expect=2e-22]} {Dmel: FBgn0035900, ZC3H3, [RH, Score=67.0, Expect=9e-12]} {RNA1509_37082} {RNA1310_10963.2} {RNA815_18673}

Mlig455_058390 {REF} {Length: 2783} {TRANSSPLICED} {Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=24.1]} {Human: ENSG00000014164, ZC3H3, zinc finger CCCH-type containing 3, [RH, Score=96.3, Expect=6e-21]} {Mouse: ENSMUSG00000075600, Zc3h3, zinc finger CCCH type containing 3, [RH, Score=99.8, Expect=3e-22]} {Dmel: FBgn0035900, ZC3H3, [RH, Score=67.4, Expect=6e-12]} {RNA1509_34328} {RNA1310_10963.2} {RNA815_18673}

Cumulative graph for MligTC455_52963

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-4.138	1.978	0.99990	1.00000
RegionR2	3.222	1.978	0.01124	0.10815
RegionR3	2.354	1.978	0.02061	0.24110
RegionR4	1.362	1.978	0.22683	0.51908
RegionR5	1.672	1.978	0.09386	0.29248
RegionR6	-3.727	1.978	1.00000	1.00000
RegionR7	2.76	1.978	0.03481	0.35529
RegionR8	-3.505	1.978	0.99961	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	2.676	1.978	0.99994	1.00000
RegenerationR2	0.51	1.978	0.52740	0.88295
RegenerationR3	1.34	1.978	0.12420	0.54470
RegenerationR4	2.002	1.978	0.03903	0.31851
RegenerationR5	2.306	1.978	0.00265	0.09014
RegenerationR6	5.606	1.978	0.00262	0.05834
RegenerationBL	4.506	1.978	0.01179	0.11088
RegenerationTP	3.456	1.978	0.07959	0.44971

Genes with expression patterns similar to MligTC455_52963

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_52963	94	1.95	Mlig455_019424, Mlig455_058390	Neo: Int S/G2/M Age: -	ZC3H3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_019424 {REF} {Length: 3114} {TRANSSPLICED} {Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=23.1]} {Human: ENSG00000014164, ZC3H3, zinc finger CCCH-type containing 3, [RH, Score=95.9, Expect=7e-21]} {Mouse: ENSMUSG00000075600, Zc3h3, zinc finger CCCH type containing 3, [RH, Score=100, Expect=2e-22]} {Dmel: FBgn0035900, ZC3H3, [RH, Score=67.0, Expect=9e-12]} {RNA1509_37082} {RNA1310_10963.2} {RNA815_18673} Mlig455_058390 {REF} {Length: 2783} {TRANSSPLICED} {Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=24.1]} {Human: ENSG00000014164, ZC3H3, zinc finger CCCH-type containing 3, [RH, Score=96.3, Expect=6e-21]} {Mouse: ENSMUSG00000075600, Zc3h3, zinc finger CCCH type containing 3, [RH, Score=99.8, Expect=3e-22]} {Dmel: FBgn0035900, ZC3H3, [RH, Score=67.4, Expect=6e-12]} {RNA1509_34328} {RNA1310_10963.2} {RNA815_18673}
2.	MligTC455_12744	227	4.72	Mlig455_039893	Neo: Irradiation Age: Down-Up-Down	PHRF1	1.677	-	-	0.958	-	0.719	-	Mlig455_039893 {REF} {Length: 4208} {TRANSSPLICED} {Pfam: PHD-finger [PF00628.31, score=47.9]; Ring finger domain [PF13639.8, score=42.3]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=23.5]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=21.8]; PHD-finger [PF13831.8, score=18.9]} {Human: ENSG00000070047, PHRF1, PHD and ring finger domains 1, [RH, Score=122, Expect=1e-27]; ENSG00000274780, PHRF1, PHD and ring finger domains 1, [RH, Score=122, Expect=1e-27]} {Mouse: ENSMUSG00000038611, Phrf1, PHD and ring finger domains 1, [RH, Score=118, Expect=2e-26]} {Dmel: FBgn0037344, CG2926, [RH, Score=110, Expect=5e-24]} {Celegans: WBGene00001470, baz-2, Bromodomain Adjacent to Zinc finger domain, 2A/2B, homolog, [Score=58.9, Expect=1e-08]} {Smed: dd_Smed_v6_12548_0_1, dd_Smed_v6_12548_0_1, [RH, Score=132, Expect=3e-31]} {RNA1509_14891} {RNA1310_3964.1, RNA1509_14891} {RNA1509_14891, RNA815_13171}
3.	MligTC455_46828	665	13.86	Mlig455_012351, Mlig455_012728	Neo: Irradiation Age: - Region-specific R4: 5.663 Region-enriched R1: 4.372/0.02033 Region-enriched R4: 4.297/0.00000		0.991	-	-	-	0.991	-	-	Mlig455_012351 {REF} {Length: 676} {NoTransDecoderORF} {RNA1509_17480, RNA1509_39462} {RNA1310_86260, RNA1509_17480, RNA1509_39462} {RNA1509_17480, RNA1509_39462, RNA815_45334} Mlig455_012728 {REF} {Length: 574} {NoTransDecoderORF} {RNA1509_17480} {RNA1310_110978} {RNA815_45334}
4.	MligTC455_49670	33	0.68	Mlig455_047674	Neo: Int S/G2/M Age: - Region-enriched R2: 4.520/0.04813 Region-enriched R4: 3.300/0.03683	WSCD2	0.977	-	-	-	0.977	-	-	Mlig455_047674 {REF} {Length: 875} {Pfam: WSC domain [PF01822.21, score=55.1]; PAN domain [PF00024.28, score=19.2]} {Human: ENSG00000075035, WSCD2, WSC domain containing 2, [Score=53.1, Expect=9e-08]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=52.8, Expect=9e-08]} {RNA1509_29094} {RNA1310_84271.1} {RNA815_51632}
5.	MligTC455_50092	140	2.92	Mlig455_041942	Neo: Irradiation Age: -	RNF216	0.973	-	-	0.973	-	-	-	Mlig455_041942 {REF} {Length: 2906} {TRANSSPLICED} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=26.8]} {Human: ENSG00000011275, RNF216, ring finger protein 216, [Score=176, Expect=1e-45]} {Mouse: ENSMUSG00000045078, Rnf216, ring finger protein 216, [Score=173, Expect=5e-45]} {Dmel: FBgn0025186, ari-2, ariadne 2, [Score=61.6, Expect=1e-09]} {Celegans: WBGene00016157, C27A12.7, [Score=68.9, Expect=5e-12]} {Smed: dd_Smed_v6_4224_0_1, dd_Smed_v6_4224_0_1, [Score=63.9, Expect=1e-10]} {RNA1509_15865} {RNA1310_11127, RNA1509_15865} {RNA1509_15865, RNA815_4010.1}
6.	MligTC455_08738	150	3.12	Mlig455_044163	Neo: - Age: Up-Down-Up, logFC(26M/2M)=1.136		0.972	-	-	-	0.972	-	-	Mlig455_044163 {REF} {Length: 1945} {TRANSSPLICED} {RNA1509_20698} {RNA1310_12115, RNA1509_20698} {RNA1509_20698, RNA815_7721}
7.	MligTC455_36815	42	0.88	Mlig455_027859	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.807	TRPM3	0.964	-	-	0.964	-	-	-	Mlig455_027859 {REF} {Length: 5435} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=93.4]; Ankyrin repeats (many copies) [PF13637.8, score=66.4]; Ankyrin repeats (many copies) [PF13857.8, score=50.5]; Ankyrin repeat [PF13606.8, score=40.2]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=77.8, Expect=2e-13]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=79.0, Expect=6e-14]; ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=77.0, Expect=2e-13]} {Dmel: FBgn0016920, nompC, no mechanoreceptor potential C, [Score=63.9, Expect=1e-09]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=80.5, Expect=1e-14]} {Smed: dd_Smed_v6_13669_0_1, dd_Smed_v6_13669_0_1, [Score=84.0, Expect=5e-16]} {RNA1509_30268} {RNA1310_2381} {RNA815_861}
8.	MligTC455_27329	53	1.1	Mlig455_027779, Mlig455_063482	Neo: - Age: Down-Down-Down		0.96	-	-	0.960	-	-	-	Mlig455_027779 {REF} {Length: 621} {NoTransDecoderORF} {RNA1310_134251} {RNA815_21359} Mlig455_063482 {REF} {Length: 3434} {Pfam: TIR domain [PF13676.8, score=60.3]} {Smed: dd_Smed_v6_9242_0_1, dd_Smed_v6_9242_0_1, [Score=140, Expect=2e-34]} {RNA1509_39812} {RNA1310_13757.1} {RNA815_21359}
9.	MligTC455_47768	38	0.79	Mlig455_034040	Neo: - Age: -	CHRNA3	0.96	-	-	0.960	-	-	-	Mlig455_034040 {REF} {Length: 2559} {Pfam: Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=94.2]; Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=25.8]} {Human: ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=139, Expect=1e-36]; ENSG00000275917, CHRFAM7A, CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, [Score=139, Expect=4e-37]; ENSG00000166664, CHRFAM7A, CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, [Score=139, Expect=8e-37]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=139, Expect=3e-36]; ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=139, Expect=1e-36]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=138, Expect=3e-36]; ENSG00000174343, CHRNA9, cholinergic receptor nicotinic alpha 9 subunit, [Score=135, Expect=5e-35]} {Mouse: ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=142, Expect=7e-38]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=136, Expect=2e-35]; ENSMUSG00000029205, Chrna9, cholinergic receptor, nicotinic, alpha polypeptide 9, [Score=135, Expect=2e-35]} {Dmel: FBgn0086778, nAChRalpha7, nicotinic Acetylcholine Receptor alpha7, [Score=160, Expect=3e-44]} {Celegans: WBGene00043066, acr-25, AcetylCholine Receptor, [Score=144, Expect=1e-38]} {Smed: dd_Smed_v6_31300_0_1, dd_Smed_v6_31300_0_1, [Score=149, Expect=3e-40]} {RNA1310_10964.1} {RNA815_16260.1}
10.	MligTC455_35686	65	1.36	Mlig455_038919	Neo: - Age: -		0.959	-	-	0.959	-	-	-	Mlig455_038919 {REF} {Length: 2464} {RNA1509_23775} {RNA1310_8867} {RNA815_5748.1}
11.	MligTC455_16401	133	2.77	Mlig455_007676, Mlig455_020991	Neo: Int S/G2/M Age: Up-Down-Down Region-enriched R4: 3.542/0.01108	DIAPH3	0.955	-	-	-	0.955	-	-	Mlig455_007676 {REF} {Length: 4598} {Pfam: Formin Homology 2 Domain [PF02181.25, score=195.1]; Diaphanous FH3 Domain [PF06367.18, score=69.7]; Diaphanous GTPase-binding Domain [PF06371.15, score=27.3]} {Human: ENSG00000139734, DIAPH3, diaphanous related formin 3, [Score=206, Expect=2e-53]} {Mouse: ENSMUSG00000022021, Diaph3, diaphanous related formin 3, [Score=191, Expect=9e-49]; ENSMUSG00000034480, Diaph2, diaphanous related formin 2, [Score=184, Expect=1e-46]} {Dmel: FBgn0011202, dia, diaphanous, [Score=174, Expect=1e-43]} {Celegans: WBGene00000872, cyk-1, CYtoKinesis defect, [Score=147, Expect=1e-35]} {Smed: dd_Smed_v6_18017_0_1, dd_Smed_v6_18017_0_1, [Score=194, Expect=1e-50]} {RNA1509_49678} {RNA1310_17988} {RNA815_38243} Mlig455_020991 {REF} {Length: 4524} {TRANSSPLICED} {Pfam: Formin Homology 2 Domain [PF02181.25, score=190.3]; Diaphanous FH3 Domain [PF06367.18, score=81.7]; Diaphanous GTPase-binding Domain [PF06371.15, score=27.4]} {Human: ENSG00000139734, DIAPH3, diaphanous related formin 3, [Score=209, Expect=1e-54]} {Mouse: ENSMUSG00000022021, Diaph3, diaphanous related formin 3, [Score=195, Expect=3e-50]; ENSMUSG00000034480, Diaph2, diaphanous related formin 2, [Score=189, Expect=2e-48]} {Dmel: FBgn0011202, dia, diaphanous, [Score=172, Expect=2e-43]} {Celegans: WBGene00000872, cyk-1, CYtoKinesis defect, [Score=122, Expect=6e-28]} {Smed: dd_Smed_v6_18017_0_1, dd_Smed_v6_18017_0_1, [Score=193, Expect=4e-50]} {RNA1509_50077} {RNA1310_16740} {RNA815_38243}
12.	MligTC455_36366	31	0.65	Mlig455_044914, Mlig455_055521, Mlig455_055535	Neo: - Age: -		0.954	-	-	-	0.954	-	-	Mlig455_044914 {REF} {Length: 467} {RNA1509_45173} {RNA1310_56841} {RNA815_31799} Mlig455_055521 {REF} {Length: 1591} {RNA1509_46145} {RNA1310_42249} {RNA815_5444.1} Mlig455_055535 {REF} {Length: 963} {RNA1509_45173} {RNA1310_6693.2, RNA1509_45173} {RNA1509_45173, RNA815_38657}
13.	MligTC455_52396	1387	28.9	Mlig455_003700, Mlig455_003743, Mlig455_003906	Neo: Irradiation Age: -	TBC1D31	0.951	-	-	-	-	-	0.951	Mlig455_003700 {REF} {Length: 4125} {Pfam: Rab-GTPase-TBC domain [PF00566.20, score=32.7]; WD domain, G-beta repeat [PF00400.34, score=27.0]} {Human: ENSG00000156787, TBC1D31, TBC1 domain family member 31, [RH, Score=427, Expect=4e-134]} {Mouse: ENSMUSG00000022364, Tbc1d31, TBC1 domain family, member 31, [RH, Score=424, Expect=1e-132]} {Dmel: FBgn0035073, CG16896, [RH, Score=189, Expect=4e-49]} {RNA1509_5616} {RNA1310_7289} {RNA815_1732} Mlig455_003743 {REF} {Length: 4634} {Pfam: Rab-GTPase-TBC domain [PF00566.20, score=32.4]; WD domain, G-beta repeat [PF00400.34, score=27.4]} {Human: ENSG00000156787, TBC1D31, TBC1 domain family member 31, [RH, Score=428, Expect=1e-132]} {Mouse: ENSMUSG00000022364, Tbc1d31, TBC1 domain family, member 31, [RH, Score=422, Expect=3e-131]} {Dmel: FBgn0035073, CG16896, [RH, Score=189, Expect=6e-49]} {RNA1509_35761, RNA1509_5616} {RNA1310_7289, RNA1509_35761} {RNA1509_35761, RNA815_1732} Mlig455_003906 {REF} {Length: 4759} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=44.6]; Rab-GTPase-TBC domain [PF00566.20, score=32.1]; WD domain, G-beta repeat [PF00400.34, score=27.2]} {Human: ENSG00000156787, TBC1D31, TBC1 domain family member 31, [RH, Score=428, Expect=2e-131]} {Mouse: ENSMUSG00000022364, Tbc1d31, TBC1 domain family, member 31, [RH, Score=422, Expect=3e-130]} {Dmel: FBgn0035073, CG16896, [RH, Score=190, Expect=4e-49]} {RNA1509_5616} {RNA1310_7289} {RNA815_1732}

Berezikov Lab - 2020-2021 © ERIBA