Data search
Results for MligTC455_52455
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_52455 | 332 | 6.92 | Mlig455_050541 | Neo: - Age: logFC(26M/2M)=-0.576 Region-specific R5: 2.003 Region-enriched R5: 1.701/0.00008 |
Mlig455_050541 {REF} {Length: 2385} {TRANSSPLICED} {Smed: dd_Smed_v6_13667_0_2, dd_Smed_v6_13667_0_2, [Score=54.7, Expect=4e-08]} {RNA1509_17264, RNA1509_32423} {RNA1310_24557.1, RNA1509_32423} {RNA1509_32423, RNA815_10482} |
Cumulative graph for MligTC455_52455
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | 1.351 | 3.174 | 0.26772 | 0.91774 | |
| RegionR2 | -0.241 | 3.174 | 0.68400 | 1.00000 | |
| RegionR3 | -0.264 | 3.174 | 0.58074 | 1.00000 | |
| RegionR4 | -0.014 | 3.174 | 0.99310 | 1.00000 | |
| RegionR5 | 1.701 | 3.174 | 0.00000 | 0.00008 | Specific for R5: 2.003 |
| RegionR6 | -0.182 | 3.174 | 0.71090 | 1.00000 | |
| RegionR7 | -0.381 | 3.174 | 0.56159 | 1.00000 | |
| RegionR8 | -1.971 | 3.174 | 0.04876 | 0.43288 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -6.959 | 3.174 | 0.09082 | 0.79971 | |
| RegenerationR2 | -0.19 | 3.174 | 0.69893 | 0.95602 | |
| RegenerationR3 | -0.229 | 3.174 | 0.66901 | 0.93646 | |
| RegenerationR4 | -0.143 | 3.174 | 0.79022 | 0.98401 | |
| RegenerationR5 | -1.53 | 3.174 | 0.00084 | 0.04824 | |
| RegenerationR6 | -0.147 | 3.174 | 0.79563 | 0.97483 | |
| RegenerationBL | -0.468 | 3.174 | 0.62459 | 0.96722 | |
| RegenerationTP | -0.515 | 3.174 | 0.61746 | 0.97080 |
Genes with expression patterns similar to MligTC455_52455
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_52455 | 332 | 6.92 | Mlig455_050541 | Neo: - Age: logFC(26M/2M)=-0.576 Region-specific R5: 2.003 Region-enriched R5: 1.701/0.00008 |
6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_050541 {REF} {Length: 2385} {TRANSSPLICED} {Smed: dd_Smed_v6_13667_0_2, dd_Smed_v6_13667_0_2, [Score=54.7, Expect=4e-08]} {RNA1509_17264, RNA1509_32423} {RNA1310_24557.1, RNA1509_32423} {RNA1509_32423, RNA815_10482} | |
| 2. | MligTC455_12743 | 107 | 2.24 | Mlig455_039861 | Neo: - Age: logFC(26M/2M)=0.596 Region-enriched R2: 5.013/0.00238 |
PHRF1 | 1.864 | 0.904 | - | - | - | 0.960 | - | Mlig455_039861 {REF} {Length: 2094} {TRANSSPLICED} {Human: ENSG00000070047, PHRF1, PHD and ring finger domains 1, [Score=68.6, Expect=7e-12]; ENSG00000274780, PHRF1, PHD and ring finger domains 1, [Score=68.6, Expect=7e-12]} {Mouse: ENSMUSG00000038611, Phrf1, PHD and ring finger domains 1, [Score=68.2, Expect=6e-12]} {Dmel: FBgn0037344, CG2926, [Score=61.2, Expect=6e-10]} {Smed: dd_Smed_v6_5142_0_1, dd_Smed_v6_5142_0_1, [RH, Score=89.0, Expect=3e-19]} {RNA1509_14891} {RNA1310_3964.1} {RNA815_13171} |
| 3. | MligTC455_49044 | 181 | 3.77 | Mlig455_055888 | Neo: - Age: - Region-enriched R4: 5.423/0.00960 |
1.732 | - | - | - | 0.959 | - | 0.773 | Mlig455_055888 {REF} {Length: 508} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_15967} {RNA1310_39655} {RNA815_17269} | |
| 4. | MligTC455_16377 | 279 | 5.82 | Mlig455_038450 | Neo: Irradiation Age: Down-Up-Up Region-enriched R4: 2.295/0.03390 |
MCAT | 1.675 | - | - | 0.958 | - | 0.717 | - | Mlig455_038450 {REF} {Length: 1387} {TRANSSPLICED} {Pfam: Acyl transferase domain [PF00698.23, score=81.5]} {Human: ENSG00000100294, MCAT, malonyl-CoA-acyl carrier protein transacylase, [RH, Score=273, Expect=3e-88]} {Mouse: ENSMUSG00000048755, Mcat, malonyl CoA:ACP acyltransferase (mitochondrial), [RH, Score=268, Expect=1e-86]} {Dmel: FBgn0036691, beg, bad egg, [RH, Score=273, Expect=1e-88]} {Celegans: WBGene00016812, C50D2.9, [RH, Score=215, Expect=5e-66]} {Smed: dd_Smed_v6_10612_0_2, dd_Smed_v6_10612_0_2, [RH, Score=256, Expect=3e-82]} {RNA1509_24521} {RNA1310_12229} {RNA815_4030} |
| 5. | MligTC455_18101 | 519 | 10.82 | Mlig455_049090 | Neo: - Age: - |
RAB39A | 1.667 | - | 0.702 | 0.965 | - | - | - | Mlig455_049090 {REF} {Length: 3973} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=146.2]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=91.4]; ADP-ribosylation factor family [PF00025.23, score=41.0]; 50S ribosome-binding GTPase [PF01926.25, score=27.7]} {Human: ENSG00000179331, RAB39A, RAB39A, member RAS oncogene family, [Score=167, Expect=2e-51]; ENSG00000155961, RAB39B, RAB39B, member RAS oncogene family, [Score=165, Expect=1e-50]} {Mouse: ENSMUSG00000055069, Rab39, RAB39, member RAS oncogene family, [Score=166, Expect=4e-51]; ENSMUSG00000031202, Rab39b, RAB39B, member RAS oncogene family, [Score=165, Expect=1e-50]} {Dmel: FBgn0029959, Rab39, [Score=189, Expect=2e-60]} {Celegans: WBGene00004286, rab-39, RAB family, [Score=161, Expect=2e-49]} {Smed: dd_Smed_v6_3651_0_1, dd_Smed_v6_3651_0_1, [Score=191, Expect=2e-61]} {RNA1509_60116} {RNA1310_40488, RNA1509_60116} {RNA1509_60116, RNA815_35666} |
| 6. | MligTC455_17407 | 327 | 6.8 | Mlig455_044727 | Neo: Irradiation Age: - Region-enriched R5: 2.345/0.00045 |
ZNRF2 | 0.976 | - | - | 0.976 | - | - | - | Mlig455_044727 {REF} {Length: 2427} {TRANSSPLICED} {Pfam: Ring finger domain [PF13639.8, score=39.0]; RING-like zinc finger [PF17123.7, score=26.3]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=24.9]; RING-type zinc-finger [PF13445.8, score=20.4]} {Human: ENSG00000180233, ZNRF2, zinc and ring finger 2, [RH, Score=145, Expect=8e-42]} {Mouse: ENSMUSG00000058446, Znrf2, zinc and ring finger 2, [RH, Score=147, Expect=8e-43]} {Dmel: FBgn0029911, CG14435, [RH, Score=145, Expect=3e-41]} {Celegans: WBGene00022115, Y71F9AL.10, [RH, Score=144, Expect=4e-42]} {Smed: dd_Smed_v6_2436_0_1, dd_Smed_v6_2436_0_1, [RH, Score=130, Expect=1e-36]} {RNA1509_37305} {RNA1310_28658} {RNA815_2923} |
| 7. | MligTC455_18477 | 830 | 17.3 | Mlig455_015447 | Neo: - Age: - |
0.966 | - | - | - | 0.966 | - | - | Mlig455_015447 {REF} {Length: 3676} {TRANSSPLICED} {Pfam: Acyltransferase family [PF01757.24, score=87.9]; Nose resistant-to-fluoxetine protein, N-terminal domain [PF20146.1, score=67.7]} {Mouse: ENSMUSG00000046610, Oacyl, O-acyltransferase like, [RH, Score=181, Expect=1e-47]} {Dmel: FBgn0052645, CG32645, [RH, Score=279, Expect=1e-81]} {Celegans: WBGene00003813, nrf-6, Nose resistant to fluoxetine protein 6, [RH, Score=259, Expect=1e-74]} {RNA1509_20123, RNA1509_5690} {RNA1310_4250.1, RNA1509_20123} {RNA1509_20123, RNA815_5869} | |
| 8. | MligTC455_44616 | 479 | 9.98 | Mlig455_033771 | Neo: Irradiation Age: - Region-enriched R5: 1.279/0.00108 |
TENT4B | 0.965 | - | - | 0.965 | - | - | - | Mlig455_033771 {REF} {Length: 2918} {TRANSSPLICED} {Pfam: Cid1 family poly A polymerase [PF03828.21, score=52.2]; Nucleotidyltransferase domain [PF01909.25, score=52.0]; TUTase nucleotidyltransferase domain [PF19088.2, score=46.8]} {Human: ENSG00000121274, TENT4B, terminal nucleotidyltransferase 4B, [RH, Score=343, Expect=4e-112]} {Mouse: ENSMUSG00000036779, Tent4b, terminal nucleotidyltransferase 4B, [RH, Score=342, Expect=5e-112]} {Dmel: FBgn0030049, Trf4-1, Topoisomerase related function 4-1, [RH, Score=330, Expect=4e-106]} {Celegans: WBGene00014115, gld-4, Poly(A) RNA polymerase gld-4, [RH, Score=206, Expect=1e-59]} {Smed: dd_Smed_v6_5011_0_1, dd_Smed_v6_5011_0_1, [Score=290, Expect=3e-93]} {RNA1509_20907, RNA1509_24204, RNA1509_41340} {RNA1310_14335, RNA1509_20907, RNA1509_24204, RNA1509_41340} {RNA1509_20907, RNA1509_24204, RNA1509_41340, RNA815_10759} |
| 9. | MligTC455_25165 | 244 | 5.09 | Mlig455_036819 | Neo: - Age: - |
CLIP3 | 0.963 | - | - | - | 0.963 | - | - | Mlig455_036819 {REF} {Length: 2475} {Pfam: CAP-Gly domain [PF01302.27, score=231.5]; Ankyrin repeats (3 copies) [PF12796.9, score=47.6]; Ankyrin repeat [PF00023.32, score=28.8]; Ankyrin repeats (many copies) [PF13637.8, score=26.1]; Protein of unknown function (DUF2722) [PF10846.10, score=22.1]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=20.5]} {Human: ENSG00000105270, CLIP3, CAP-Gly domain containing linker protein 3, [RH, Score=226, Expect=6e-66]} {Mouse: ENSMUSG00000013921, Clip3, CAP-GLY domain containing linker protein 3, [RH, Score=222, Expect=8e-65]} {Dmel: FBgn0020503, CLIP-190, Cytoplasmic linker protein 190, [Score=146, Expect=2e-36]} {Celegans: WBGene00009987, tbcb-1, Tubulin-specific chaperone B, [Score=67.0, Expect=2e-12]} {Smed: dd_Smed_v6_6540_0_1, dd_Smed_v6_6540_0_1, [RH, Score=418, Expect=2e-138]} {RNA1509_29697} {RNA1310_15773, RNA1509_29697} {RNA1509_29697, RNA815_18829} |
| 10. | MligTC455_19446 | 334 | 6.96 | Mlig455_058253 | Neo: - Age: - Region-enriched R5: 1.502/0.00083 |
0.958 | - | - | - | - | 0.958 | - | Mlig455_058253 {REF} {Length: 1699} {TRANSSPLICED} {tRNA: Gln(TTG), score=76.3} {Pfam: Uncharacterised protein family UPF0542 [PF15086.8, score=82.7]} {Smed: dd_Smed_v6_2870_0_1, dd_Smed_v6_2870_0_1, [RH, Score=57.0, Expect=6e-12]} {RNA1509_15931, RNA1509_41745} {RNA1310_23211.1, RNA1509_15931, RNA1509_41745} {RNA1509_15931, RNA1509_41745, RNA815_18569.1} | |
| 11. | MligTC455_04709 | 274 | 5.71 | Mlig455_057310, Mlig455_059596 | Neo: - Age: - |
FUT8 | 0.956 | - | - | - | - | 0.956 | - | Mlig455_057310 {REF} {Length: 4269} {TRANSSPLICED} {Pfam: Alpha-(1,6)-fucosyltransferase N- and catalytic domains [PF19745.1, score=638.5]; Variant SH3 domain [PF14604.8, score=40.9]} {Human: ENSG00000033170, FUT8, fucosyltransferase 8, [RH, Score=472, Expect=1e-160]} {Mouse: ENSMUSG00000021065, Fut8, fucosyltransferase 8, [RH, Score=467, Expect=5e-159]} {Dmel: FBgn0030327, FucT6, alpha1,6-fucosyltransferase, [RH, Score=428, Expect=4e-143]} {Celegans: WBGene00001508, fut-8, Alpha-(1,6)-fucosyltransferase, [RH, Score=387, Expect=3e-128]} {Smed: dd_Smed_v6_6671_0_1, dd_Smed_v6_6671_0_1, [RH, Score=385, Expect=2e-127]} {RNA1509_54922, RNA1509_58653} {RNA1310_10253, RNA1509_54922, RNA1509_58653} {RNA1509_54922, RNA1509_58653, RNA815_5051} Mlig455_059596 {REF} {Length: 4115} {TRANSSPLICED} {Pfam: Alpha-(1,6)-fucosyltransferase N- and catalytic domains [PF19745.1, score=638.5]; Variant SH3 domain [PF14604.8, score=40.9]} {Human: ENSG00000033170, FUT8, fucosyltransferase 8, [RH, Score=472, Expect=1e-160]} {Mouse: ENSMUSG00000021065, Fut8, fucosyltransferase 8, [RH, Score=467, Expect=5e-159]} {Dmel: FBgn0030327, FucT6, alpha1,6-fucosyltransferase, [RH, Score=428, Expect=4e-143]} {Celegans: WBGene00001508, fut-8, Alpha-(1,6)-fucosyltransferase, [RH, Score=387, Expect=3e-128]} {Smed: dd_Smed_v6_6671_0_1, dd_Smed_v6_6671_0_1, [RH, Score=385, Expect=2e-127]} {RNA1509_24064} {RNA1310_10253, RNA1509_24064} {RNA1509_24064, RNA815_5051} |
| 12. | MligTC455_27947 | 353 | 7.35 | Mlig455_049351 | Neo: - Age: Up-Down-Down |
BCAT2 | 0.953 | - | - | 0.953 | - | - | - | Mlig455_049351 {REF} {Length: 3773} {Pfam: Amino-transferase class IV [PF01063.21, score=94.8]} {Human: ENSG00000105552, BCAT2, branched chain amino acid transaminase 2, [Score=364, Expect=2e-123]; ENSG00000060982, BCAT1, branched chain amino acid transaminase 1, [Score=362, Expect=2e-122]} {Mouse: ENSMUSG00000030826, Bcat2, branched chain aminotransferase 2, mitochondrial, [Score=379, Expect=3e-129]; ENSMUSG00000030268, Bcat1, branched chain aminotransferase 1, cytosolic, [Score=370, Expect=4e-126]} {Dmel: FBgn0030482, CG1673, [Score=370, Expect=2e-125]} {Celegans: WBGene00001149, bcat-1, Branched-chain-amino-acid aminotransferase, cytosolic, [RH, Score=372, Expect=2e-126]} {Smed: dd_Smed_v6_3721_0_1, dd_Smed_v6_3721_0_1, [RH, Score=410, Expect=7e-142]} {RNA1509_24419, RNA1509_52594} {RNA1310_21362.1, RNA1509_52594} {RNA1509_52594, RNA815_10816} |
| 13. | MligTC455_20299 | 295 | 6.15 | Mlig455_059102 | Neo: - Age: - |
SLC17A5 | 0.951 | - | - | - | 0.951 | - | - | Mlig455_059102 {REF} {Length: 2831} {Pfam: Major Facilitator Superfamily [PF07690.18, score=144.7]; Uncharacterised MFS-type transporter YbfB [PF06779.16, score=26.7]; Sugar (and other) transporter [PF00083.26, score=20.2]} {Human: ENSG00000119899, SLC17A5, solute carrier family 17 member 5, [Score=186, Expect=2e-53]} {Mouse: ENSMUSG00000049624, Slc17a5, solute carrier family 17 (anion/sugar transporter), member 5, [Score=181, Expect=2e-51]} {Dmel: FBgn0038799, MFS9, Major Facilitator Superfamily Transporter 9, [Score=159, Expect=1e-43]} {Celegans: WBGene00022647, slc-17.1, SLC (SoLute Carrier) homolog, [Score=144, Expect=3e-38]} {Smed: dd_Smed_v6_6845_0_1, dd_Smed_v6_6845_0_1, [RH, Score=494, Expect=2e-174]} {RNA1509_39490} {RNA1310_17100} {RNA815_9623} |
Berezikov Lab - 2020-2021 © ERIBA