M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_52478

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_52478 375 7.81 Mlig455_060315

Neo: -

Age: -

 Mlig455_060315 {REF} {Length: 433} {TRANSSPLICED} {RNA1509_28551} {RNA1310_65756} {RNA815_32050}

Cumulative graph for MligTC455_52478

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.406 3.422 0.73833 1.00000
RegionR2 0.306 3.422 0.59629 0.94793
RegionR3 0.893 3.422 0.01870 0.22769
RegionR4 0.226 3.422 0.65715 0.95762
RegionR5 0.584 3.422 0.09349 0.29167
RegionR6 0.219 3.422 0.61687 1.00000
RegionR7 -1.089 3.422 0.11705 0.64670
RegionR8 -1.545 3.422 0.09199 0.57295

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.174 3.422 0.32049 1.00000
RegenerationR2 0.538 3.422 0.23361 0.68130
RegenerationR3 0.533 3.422 0.23125 0.66588
RegenerationR4 0.769 3.422 0.11754 0.52282
RegenerationR5 0.623 3.422 0.10938 0.49990
RegenerationR6 0.77 3.422 0.12290 0.43119
RegenerationBL 1.603 3.422 0.03806 0.22095
RegenerationTP 1.358 3.422 0.10673 0.50488


Genes with expression patterns similar to MligTC455_52478

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_52478 375 7.81 Mlig455_060315

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_060315 {REF} {Length: 433} {TRANSSPLICED} {RNA1509_28551} {RNA1310_65756} {RNA815_32050}
2. MligTC455_06033 226 4.71 Mlig455_065384

Neo: -

Age: Up-Down-Down

 FBXO38 2.571 - - - 0.825 0.958 0.788 Mlig455_065384 {REF} {Length: 5994} {TRANSSPLICED} {Pfam: F-box-like [PF12937.9, score=28.4]} {Human: ENSG00000145868, FBXO38, F-box protein 38, [Score=224, Expect=3e-60]} {Mouse: ENSMUSG00000042211, Fbxo38, F-box protein 38, [Score=223, Expect=1e-59]} {Smed: dd_Smed_v6_7155_0_1, dd_Smed_v6_7155_0_1, [RH, Score=229, Expect=1e-61]} {RNA1509_15272, RNA1509_18946, RNA1509_38039, RNA1509_53129, RNA1509_54927} {RNA1310_5356, RNA1509_15272, RNA1509_18946, RNA1509_38039, RNA1509_53129, RNA1509_54927} {RNA1509_15272, RNA1509_18946, RNA1509_38039, RNA1509_53129, RNA1509_54927, RNA815_4972.1}
3. MligTC455_41755 273 5.69 Mlig455_062496

Neo: -

Age: -

 RBBP5 0.963 - - 0.963 - - - Mlig455_062496 {REF} {Length: 1970} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=51.9]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=36.0]} {Human: ENSG00000117222, RBBP5, RB binding protein 5, histone lysine methyltransferase complex subunit, [RH, Score=555, Expect=0.0]} {Mouse: ENSMUSG00000026439, Rbbp5, retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit, [RH, Score=554, Expect=0.0]} {Dmel: FBgn0036973, Rbbp5, Retinoblastoma binding protein 5, [RH, Score=561, Expect=0.0]} {Celegans: WBGene00017683, rbbp-5, Retinoblastoma-binding protein homolog 5, [RH, Score=300, Expect=4e-96]} {Smed: dd_Smed_v6_4897_0_1, dd_Smed_v6_4897_0_1, [RH, Score=525, Expect=0.0]} {RNA1509_24461, RNA1509_36823} {RNA1310_14133, RNA1509_24461, RNA1509_36823} {RNA1509_24461, RNA1509_36823, RNA815_5169}
4. MligTC455_46408 224 4.66 Mlig455_050923

Neo: Int S/G2/M

Age: Up-Down-Down

Region-enriched R4: 2.042/0.02257

 PIAS3 0.957 - - - - - 0.957 Mlig455_050923 {REF} {Length: 5417} {Pfam: MIZ/SP-RING zinc finger [PF02891.22, score=75.8]; PINIT domain [PF14324.8, score=61.1]; Zinc-finger of the MIZ type in Nse subunit [PF11789.10, score=27.4]} {Human: ENSG00000131788, PIAS3, protein inhibitor of activated STAT 3, [Score=174, Expect=1e-45]; ENSG00000078043, PIAS2, protein inhibitor of activated STAT 2, [Score=171, Expect=1e-44]} {Mouse: ENSMUSG00000028101, Pias3, protein inhibitor of activated STAT 3, [Score=172, Expect=6e-45]; ENSMUSG00000025423, Pias2, protein inhibitor of activated STAT 2, [Score=171, Expect=7e-45]} {Dmel: FBgn0003612, Su(var)2-10, Suppressor of variegation 2-10, [Score=198, Expect=1e-53]} {Celegans: WBGene00001574, gei-17, E3 SUMO-protein ligase gei-17, [Score=135, Expect=1e-32]} {Smed: dd_Smed_v6_7152_0_2, dd_Smed_v6_7152_0_2, [RH, Score=131, Expect=3e-31]} {RNA1509_14084, RNA1509_36989, RNA1509_43113, RNA1509_52988, RNA1509_55658} {RNA1310_11729.1, RNA1509_36989, RNA1509_43113, RNA1509_52988, RNA1509_55658} {RNA1509_36989, RNA1509_43113, RNA1509_52988, RNA1509_55658, RNA815_11469.1}
5. MligTC455_33175 175 3.64 Mlig455_043352

Neo: -

Age: Up-Down-Down

 PPP1R12A 0.954 - - - - - 0.954 Mlig455_043352 {REF} {Length: 6024} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=98.4]; Ankyrin repeats (3 copies) [PF12796.9, score=97.7]; Ankyrin repeats (many copies) [PF13857.8, score=85.9]; Ankyrin repeat [PF00023.32, score=70.9]; Ankyrin repeat [PF13606.8, score=62.6]; cGMP-dependent protein kinase interacting domain [PF15898.7, score=41.6]} {Human: ENSG00000058272, PPP1R12A, protein phosphatase 1 regulatory subunit 12A, [Score=264, Expect=3e-74]} {Mouse: ENSMUSG00000019907, Ppp1r12a, protein phosphatase 1, regulatory subunit 12A, [Score=263, Expect=5e-74]} {Dmel: FBgn0005536, Mbs, Myosin binding subunit, [Score=239, Expect=2e-71]} {Celegans: WBGene00003196, mel-11, MEL-11, [Score=237, Expect=1e-65]} {Smed: dd_Smed_v6_8624_0_1, dd_Smed_v6_8624_0_1, [RH, Score=234, Expect=6e-66]} {RNA1509_16757, RNA1509_39080} {RNA1310_5211.1, RNA1509_39080} {RNA1509_39080, RNA815_18256.1}
6. MligTC455_23016 740 15.41 Mlig455_044458, Mlig455_046750

Neo: -

Age: Down-Up-Down

 ACTR10 0.953 - - 0.953 - - -

Mlig455_044458 {REF} {Length: 2559} {Pfam: Actin [PF00022.21, score=165.9]} {Human: ENSG00000131966, ACTR10, actin related protein 10 homolog, [RH, Score=331, Expect=3e-110]} {Mouse: ENSMUSG00000021076, Actr10, ARP10 actin-related protein 10, [RH, Score=335, Expect=1e-111]} {Dmel: FBgn0031050, Arp10, Actin-related protein 10, [RH, Score=271, Expect=1e-87]} {Celegans: WBGene00016793, arp-11, Actin-Related Proteins, [RH, Score=140, Expect=1e-37]} {Smed: dd_Smed_v6_2141_0_3, dd_Smed_v6_2141_0_3, [RH, Score=277, Expect=8e-90]} {RNA1509_14893} {RNA1310_17436.1, RNA1509_14893} {RNA1509_14893, RNA815_13290.1}

Mlig455_046750 {REF} {Length: 2683} {Pfam: Actin [PF00022.21, score=167.7]} {Human: ENSG00000131966, ACTR10, actin related protein 10 homolog, [RH, Score=332, Expect=3e-110]} {Mouse: ENSMUSG00000021076, Actr10, ARP10 actin-related protein 10, [RH, Score=336, Expect=5e-112]} {Dmel: FBgn0031050, Arp10, Actin-related protein 10, [RH, Score=271, Expect=2e-87]} {Celegans: WBGene00016793, arp-11, Actin-Related Proteins, [RH, Score=144, Expect=6e-39]} {Smed: dd_Smed_v6_2141_0_3, dd_Smed_v6_2141_0_3, [RH, Score=279, Expect=2e-90]} {RNA1509_14893} {RNA1310_14286} {RNA815_22726}
7. MligTC455_47506 2016 42 Mlig455_022609, Mlig455_063634

Neo: -

Age: -

Region-enriched R4: 1.114/0.00086

 0.951 0.951 - - - - -

Mlig455_022609 {REF} {Length: 1920} {TRANSSPLICED} {Pfam: Mitochondrial and peroxisomal fission factor Mff [PF05644.13, score=85.8]} {RNA1509_24447} {RNA1310_29887} {RNA815_20947}

Mlig455_063634 {REF} {Length: 1609} {TRANSSPLICED} {Pfam: Mitochondrial and peroxisomal fission factor Mff [PF05644.13, score=67.6]} {RNA1509_24447} {RNA1310_53535, RNA1509_24447} {RNA1509_24447, RNA815_33306}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA