M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_33175

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_33175 175 3.64 Mlig455_043352

Neo: -

Age: Up-Down-Down

 PPP1R12A Mlig455_043352 {REF} {Length: 6024} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=98.4]; Ankyrin repeats (3 copies) [PF12796.9, score=97.7]; Ankyrin repeats (many copies) [PF13857.8, score=85.9]; Ankyrin repeat [PF00023.32, score=70.9]; Ankyrin repeat [PF13606.8, score=62.6]; cGMP-dependent protein kinase interacting domain [PF15898.7, score=41.6]} {Human: ENSG00000058272, PPP1R12A, protein phosphatase 1 regulatory subunit 12A, [Score=264, Expect=3e-74]} {Mouse: ENSMUSG00000019907, Ppp1r12a, protein phosphatase 1, regulatory subunit 12A, [Score=263, Expect=5e-74]} {Dmel: FBgn0005536, Mbs, Myosin binding subunit, [Score=239, Expect=2e-71]} {Celegans: WBGene00003196, mel-11, MEL-11, [Score=237, Expect=1e-65]} {Smed: dd_Smed_v6_8624_0_1, dd_Smed_v6_8624_0_1, [RH, Score=234, Expect=6e-66]} {RNA1509_16757, RNA1509_39080} {RNA1310_5211.1, RNA1509_39080} {RNA1509_39080, RNA815_18256.1}

Cumulative graph for MligTC455_33175

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.394 2.594 0.81818 1.00000
RegionR2 0.402 2.594 0.59278 0.94535
RegionR3 -0.388 2.594 0.49515 0.99163
RegionR4 0.265 2.594 0.70411 0.99201
RegionR5 0.297 2.594 0.53584 0.89867
RegionR6 0.085 2.594 0.88536 1.00000
RegionR7 -0.124 2.594 0.86652 1.00000
RegionR8 -0.932 2.594 0.36742 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.511 2.594 0.44367 1.00000
RegenerationR2 -0.591 2.594 0.32676 0.76486
RegenerationR3 0.688 2.594 0.30024 0.73177
RegenerationR4 0.43 2.594 0.52823 0.88358
RegenerationR5 -0.1 2.594 0.86984 1.00000
RegenerationR6 0.078 2.594 0.90372 1.00000
RegenerationBL -1.08 2.594 0.41926 0.78776
RegenerationTP 0.307 2.594 0.76658 1.00000


Genes with expression patterns similar to MligTC455_33175

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_33175 175 3.64 Mlig455_043352

Neo: -

Age: Up-Down-Down

 PPP1R12A 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_043352 {REF} {Length: 6024} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=98.4]; Ankyrin repeats (3 copies) [PF12796.9, score=97.7]; Ankyrin repeats (many copies) [PF13857.8, score=85.9]; Ankyrin repeat [PF00023.32, score=70.9]; Ankyrin repeat [PF13606.8, score=62.6]; cGMP-dependent protein kinase interacting domain [PF15898.7, score=41.6]} {Human: ENSG00000058272, PPP1R12A, protein phosphatase 1 regulatory subunit 12A, [Score=264, Expect=3e-74]} {Mouse: ENSMUSG00000019907, Ppp1r12a, protein phosphatase 1, regulatory subunit 12A, [Score=263, Expect=5e-74]} {Dmel: FBgn0005536, Mbs, Myosin binding subunit, [Score=239, Expect=2e-71]} {Celegans: WBGene00003196, mel-11, MEL-11, [Score=237, Expect=1e-65]} {Smed: dd_Smed_v6_8624_0_1, dd_Smed_v6_8624_0_1, [RH, Score=234, Expect=6e-66]} {RNA1509_16757, RNA1509_39080} {RNA1310_5211.1, RNA1509_39080} {RNA1509_39080, RNA815_18256.1}
2. MligTC455_16058 347 7.23 Mlig455_056205

Neo: -

Age: -

 GDAP2 1.756 - - - - 0.960 0.796 Mlig455_056205 {REF} {Length: 3217} {TRANSSPLICED} {Pfam: Divergent CRAL/TRIO domain [PF13716.8, score=42.0]} {Human: ENSG00000196505, GDAP2, ganglioside induced differentiation associated protein 2, [Score=199, Expect=8e-57]} {Mouse: ENSMUSG00000027865, Gdap2, ganglioside-induced differentiation-associated-protein 2, [Score=194, Expect=2e-54]} {Dmel: FBgn0042135, CG18812, [Score=153, Expect=4e-40]} {Smed: dd_Smed_v6_8031_0_1, dd_Smed_v6_8031_0_1, [Score=63.2, Expect=2e-10]} {RNA1509_36908} {RNA1310_9273.1} {RNA815_3097}
3. MligTC455_34636 156 3.25 Mlig455_024580

Neo: -

Age: -

 GALT 1.688 - - - - 0.737 0.951 Mlig455_024580 {REF} {Length: 3303} {TRANSSPLICED} {Pfam: Galactose-1-phosphate uridyl transferase, C-terminal domain [PF02744.19, score=198.0]; Galactose-1-phosphate uridyl transferase, N-terminal domain [PF01087.24, score=193.6]} {Human: ENSG00000213930, GALT, galactose-1-phosphate uridylyltransferase, [RH, Score=417, Expect=3e-145]} {Mouse: ENSMUSG00000036073, Galt, galactose-1-phosphate uridyl transferase, [RH, Score=421, Expect=2e-147]} {Dmel: FBgn0263200, Galt, Galactose-1-phosphate uridylyltransferase, [RH, Score=409, Expect=1e-142]} {Celegans: WBGene00014203, ZK1058.3, Probable galactose-1-phosphate uridylyltransferase, [RH, Score=363, Expect=1e-124]} {Smed: dd_Smed_v6_5995_0_1, dd_Smed_v6_5995_0_1, [RH, Score=389, Expect=3e-135]} {RNA1509_12200} {RNA1310_17669} {RNA815_12773}
4. MligTC455_20046 292 6.08 Mlig455_028903

Neo: -

Age: -

 WDR89 1.681 - - - - 0.729 0.952 Mlig455_028903 {REF} {Length: 1762} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=20.3]} {Human: ENSG00000140006, WDR89, WD repeat domain 89, [RH, Score=108, Expect=1e-25]} {Mouse: ENSMUSG00000045690, Wdr89, WD repeat domain 89, [RH, Score=110, Expect=1e-26]} {Dmel: FBgn0033471, CG12134, [RH, Score=76.3, Expect=8e-15]} {Smed: dd_Smed_v6_13963_0_1, dd_Smed_v6_13963_0_1, [RH, Score=65.5, Expect=8e-12]} {RNA1509_41108, RNA1509_53990} {RNA1310_19275, RNA1509_41108, RNA1509_53990} {RNA1509_41108, RNA1509_53990, RNA815_7400}
5. MligTC455_03723 113 2.36 Mlig455_021604

Neo: -

Age: -

 POU6F2 0.967 - - - - 0.967 - Mlig455_021604 {REF} {Length: 3537} {TRANSSPLICED} {Pfam: Pou domain - N-terminal to homeobox domain [PF00157.19, score=101.1]; Uncharacterized conserved domain (SAYSvFN) [PF10260.11, score=75.9]; Homeodomain [PF00046.31, score=59.3]} {Human: ENSG00000106536, POU6F2, POU class 6 homeobox 2, [RH, Score=247, Expect=1e-71]} {Mouse: ENSMUSG00000009734, Pou6f2, POU domain, class 6, transcription factor 2, [RH, Score=247, Expect=3e-72]} {Dmel: FBgn0261588, pdm3, pou domain motif 3, [RH, Score=243, Expect=2e-67]} {Celegans: WBGene00000441, ceh-18, Homeobox protein ceh-18, [Score=123, Expect=2e-29]} {Smed: dd_Smed_v6_13010_0_1, dd_Smed_v6_13010_0_1, [RH, Score=231, Expect=2e-67]} {RNA1509_23034, RNA1509_27833, RNA1509_54528} {RNA1310_7430, RNA1509_27833, RNA1509_54528} {RNA1509_27833, RNA1509_54528, RNA815_11647}
6. MligTC455_29597 76 1.58 Mlig455_006922, Mlig455_017936

Neo: -

Age: -

 0.965 - - - 0.965 - -

Mlig455_006922 {REF} {Length: 940} {NoTransDecoderORF} {RNA1509_52102} {RNA1310_142651} {RNA815_35011}

Mlig455_017936 {REF} {Length: 214} {NoTransDecoderORF} {RNA1310_91364}
7. MligTC455_46999 1066 22.21 Mlig455_019051, Mlig455_055638, Mlig455_055655

Neo: Int S/G2/M

Age: -

 ABHD18 0.963 - - - - - 0.963

Mlig455_019051 {REF} {Length: 1989} {TRANSSPLICED} {Pfam: Alpha/beta hydrolase domain containing 18 [PF09752.11, score=229.2]} {Human: ENSG00000164074, ABHD18, abhydrolase domain containing 18, [Score=188, Expect=3e-54]} {Mouse: ENSMUSG00000115963, Abhd18, abhydrolase domain containing 18, [Score=193, Expect=2e-56]; ENSMUSG00000037818, Abhd18, abhydrolase domain containing 18, [Score=193, Expect=2e-56]} {Dmel: FBgn0052112, CG32112, [Score=189, Expect=2e-54]} {Celegans: WBGene00008317, C54G4.7, [RH, Score=161, Expect=2e-45]} {Smed: dd_Smed_v6_10447_0_1, dd_Smed_v6_10447_0_1, [Score=224, Expect=3e-68]} {RNA1509_25668, RNA1509_9676} {RNA1310_3443.1, RNA1509_25668, RNA1509_9676} {RNA1509_25668, RNA1509_9676, RNA815_5047}

Mlig455_055638 {REF} {Length: 2520} {TRANSSPLICED} {Pfam: Alpha/beta hydrolase domain containing 18 [PF09752.11, score=263.3]} {Human: ENSG00000164074, ABHD18, abhydrolase domain containing 18, [RH, Score=222, Expect=6e-65]} {Mouse: ENSMUSG00000037818, Abhd18, abhydrolase domain containing 18, [RH, Score=227, Expect=6e-67]; ENSMUSG00000115963, Abhd18, abhydrolase domain containing 18, [RH, Score=227, Expect=6e-67]} {Dmel: FBgn0052112, CG32112, [RH, Score=215, Expect=5e-62]} {Celegans: WBGene00008317, C54G4.7, [RH, Score=162, Expect=3e-44]} {Smed: dd_Smed_v6_10447_0_1, dd_Smed_v6_10447_0_1, [RH, Score=243, Expect=7e-73]} {RNA1509_25668} {RNA1310_3443.1} {RNA815_5047}

Mlig455_055655 {REF} {Length: 1909} {Pfam: Alpha/beta hydrolase domain containing 18 [PF09752.11, score=259.4]} {Human: ENSG00000164074, ABHD18, abhydrolase domain containing 18, [Score=207, Expect=4e-61]} {Mouse: ENSMUSG00000115963, Abhd18, abhydrolase domain containing 18, [Score=212, Expect=5e-63]; ENSMUSG00000037818, Abhd18, abhydrolase domain containing 18, [Score=212, Expect=5e-63]} {Dmel: FBgn0052112, CG32112, [Score=204, Expect=1e-59]} {Celegans: WBGene00008317, C54G4.7, [RH, Score=155, Expect=1e-42]} {Smed: dd_Smed_v6_10447_0_1, dd_Smed_v6_10447_0_1, [Score=221, Expect=8e-67]} {RNA1509_25668, RNA1509_31851} {RNA1310_3443.1, RNA1509_31851} {RNA1509_31851, RNA815_5047}
8. MligTC455_54032 232 4.84 Mlig455_005624

Neo: -

Age: -

 MAPKAP1 0.956 - - - - 0.956 - Mlig455_005624 {REF} {Length: 3831} {TRANSSPLICED} {Pfam: SAPK-interacting protein 1 (Sin1), middle CRIM domain [PF16978.7, score=71.6]} {Human: ENSG00000119487, MAPKAP1, mitogen-activated protein kinase associated protein 1, [RH, Score=143, Expect=7e-36]} {Mouse: ENSMUSG00000038696, Mapkap1, mitogen-activated protein kinase associated protein 1, [RH, Score=144, Expect=2e-36]} {Smed: dd_Smed_v6_11576_0_1, dd_Smed_v6_11576_0_1, [RH, Score=106, Expect=5e-24]} {RNA1509_21486} {RNA1310_4164.1} {RNA815_4596}
9. MligTC455_52478 375 7.81 Mlig455_060315

Neo: -

Age: -

 0.954 - - - - - 0.954 Mlig455_060315 {REF} {Length: 433} {TRANSSPLICED} {RNA1509_28551} {RNA1310_65756} {RNA815_32050}
10. MligTC455_08847 129 2.69 Mlig455_036624, Mlig455_036701

Neo: -

Age: -

 0.953 - - 0.953 - - -

Mlig455_036624 {REF} {Length: 113} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_98531} {RNA815_35529}

Mlig455_036701 {REF} {Length: 497} {TRANSSPLICED} {RNA1310_86926} {RNA815_35529}
11. MligTC455_11697 21 0.43 Mlig455_062586

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_062586 {REF} {Length: 2170} {NoTransDecoderORF} {RNA1509_17674} {RNA1310_18091} {RNA815_51575}
12. MligTC455_28398 370 7.71 Mlig455_045614

Neo: -

Age: -

 RCAN1 0.953 - - - - 0.953 - Mlig455_045614 {REF} {Length: 2097} {TRANSSPLICED} {Pfam: Calcipressin [PF04847.14, score=91.9]} {Human: ENSG00000159200, RCAN1, regulator of calcineurin 1, [Score=108, Expect=3e-30]} {Mouse: ENSMUSG00000022951, Rcan1, regulator of calcineurin 1, [Score=108, Expect=3e-30]} {Dmel: FBgn0086370, sra, sarah, [Score=81.6, Expect=4e-19]} {Celegans: WBGene00004321, rcan-1, Calcipressin-like protein, [Score=77.8, Expect=2e-18]} {Smed: dd_Smed_v6_4483_0_1, dd_Smed_v6_4483_0_1, [Score=93.6, Expect=3e-24]} {RNA1509_27315, RNA1509_46576, RNA1509_9962} {RNA1310_32387, RNA1509_27315, RNA1509_46576, RNA1509_9962} {RNA1509_27315, RNA1509_46576, RNA1509_9962, RNA815_9658}
13. MligTC455_17398 1473 30.69 Mlig455_056391, Mlig455_058599, Mlig455_070776

Neo: -

Age: -

 0.951 - - - 0.951 - -

Mlig455_056391 {REF} {Length: 476} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_29664} {RNA1310_86041} {RNA815_53979}

Mlig455_058599 {REF} {Length: 447} {NoTransDecoderORF} {RNA1509_29664} {RNA1310_86041} {RNA815_53979}

Mlig455_070776 {REF} {Length: 473} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_29664} {RNA1310_86041} {RNA815_53979}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA