M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_52620

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_52620 26 0.54 Mlig455_024895

Neo: -

Age: -

 PCF11 Mlig455_024895 {REF} {Length: 3676} {Pfam: CID domain [PF04818.15, score=23.4]} {Human: ENSG00000165494, PCF11, PCF11, cleavage and polyadenylation factor subunit, [Score=84.7, Expect=5e-16]} {Mouse: ENSMUSG00000041328, Pcf11, PCF11 cleavage and polyadenylation factor subunit, [Score=89.7, Expect=1e-17]} {Dmel: FBgn0264962, Pcf11, Protein 1 of cleavage and polyadenylation factor 1, [Score=65.9, Expect=2e-10]} {Celegans: WBGene00020092, pcf-11, Polyadenylation and cleavage factor homolog 11, [Score=58.2, Expect=2e-08]} {Smed: dd_Smed_v6_3280_0_1, dd_Smed_v6_3280_0_1, [Score=125, Expect=2e-29]} {RNA1509_14664} {RNA1310_4848.1, RNA1509_14664} {RNA1509_14664, RNA815_5846}

Cumulative graph for MligTC455_52620

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 3.279 0.852 0.25738 0.90534
RegionR2 -1.352 0.852 0.96842 1.00000
RegionR3 -0.487 0.852 0.67191 1.00000
RegionR4 -0.062 0.852 0.89400 1.00000
RegionR5 0.765 0.852 0.49453 0.85799
RegionR6 0.039 0.852 0.75375 1.00000
RegionR7 -3.627 0.852 0.16099 0.74136
RegionR8 1.444 0.852 0.69022 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.202 0.852 0.98098 1.00000
RegenerationR2 0.529 0.852 0.86163 1.00000
RegenerationR3 0.072 0.852 0.41867 0.81403
RegenerationR4 -0.475 0.852 0.50442 0.87141
RegenerationR5 -0.671 0.852 0.42343 0.81348
RegenerationR6 -1.024 0.852 0.88492 1.00000
RegenerationBL 0.281 0.852 0.99965 1.00000
RegenerationTP -1.299 0.852 0.99976 1.00000


Genes with expression patterns similar to MligTC455_52620

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_52620 26 0.54 Mlig455_024895

Neo: -

Age: -

 PCF11 2 1.000 1.000 - - - - Mlig455_024895 {REF} {Length: 3676} {Pfam: CID domain [PF04818.15, score=23.4]} {Human: ENSG00000165494, PCF11, PCF11, cleavage and polyadenylation factor subunit, [Score=84.7, Expect=5e-16]} {Mouse: ENSMUSG00000041328, Pcf11, PCF11 cleavage and polyadenylation factor subunit, [Score=89.7, Expect=1e-17]} {Dmel: FBgn0264962, Pcf11, Protein 1 of cleavage and polyadenylation factor 1, [Score=65.9, Expect=2e-10]} {Celegans: WBGene00020092, pcf-11, Polyadenylation and cleavage factor homolog 11, [Score=58.2, Expect=2e-08]} {Smed: dd_Smed_v6_3280_0_1, dd_Smed_v6_3280_0_1, [Score=125, Expect=2e-29]} {RNA1509_14664} {RNA1310_4848.1, RNA1509_14664} {RNA1509_14664, RNA815_5846}
2. MligTC455_18412 142 2.96 Mlig455_013438

Neo: -

Age: -

 WDR41 0.969 0.969 - - - - - Mlig455_013438 {REF} {Length: 2509} {Pfam: WD domain, G-beta repeat [PF00400.34, score=31.8]} {Human: ENSG00000164253, WDR41, WD repeat domain 41, [RH, Score=60.1, Expect=3e-09]} {Mouse: ENSMUSG00000042015, Wdr41, WD repeat domain 41, [Score=56.6, Expect=3e-08]} {RNA1509_34814} {RNA1310_18965} {RNA815_22933}
3. MligTC455_52728 106 2.22 Mlig455_070290

Neo: -

Age: -

 0.962 0.962 - - - - - Mlig455_070290 {REF} {Length: 1652} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=55.7]; TcdA/TcdB catalytic glycosyltransferase domain [PF12919.9, score=18.2]} {Smed: dd_Smed_v6_6819_0_1, dd_Smed_v6_6819_0_1, [Score=128, Expect=4e-34]} {RNA1509_41314} {RNA1310_26265} {RNA815_9728}
4. MligTC455_20024 159 3.31 Mlig455_069868

Neo: Irradiation

Age: -

 NSD2 0.961 0.961 - - - - - Mlig455_069868 {REF} {Length: 3452} {Pfam: PWWP domain [PF00855.19, score=106.0]; PHD-finger [PF00628.31, score=32.7]; AWS domain [PF17907.3, score=22.2]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=18.4]} {Human: ENSG00000109685, NSD2, nuclear receptor binding SET domain protein 2, [Score=209, Expect=2e-54]} {Mouse: ENSMUSG00000057406, Nsd2, nuclear receptor binding SET domain protein 2, [Score=209, Expect=8e-55]; ENSMUSG00000021488, Nsd1, nuclear receptor-binding SET-domain protein 1, [Score=200, Expect=1e-51]} {Dmel: FBgn0039559, NSD, Nuclear receptor binding SET domain protein, [Score=172, Expect=2e-43]} {Smed: dd_Smed_v6_4755_0_2, dd_Smed_v6_4755_0_2, [Score=186, Expect=6e-49]} {RNA1509_22588} {RNA1310_10794.1} {RNA815_16118}
5. MligTC455_18883 535 11.15 Mlig455_026108, Mlig455_043087

Neo: -

Age: -

Region-enriched R5: 1.224/0.02634

 0.96 0.960 - - - - -

Mlig455_026108 {REF} {Length: 2218} {TRANSSPLICED} {RNA1509_32569} {RNA1310_12856.1} {RNA815_5134.1}

Mlig455_043087 {REF} {Length: 2053} {TRANSSPLICED} {RNA1509_32569, RNA1509_39797} {RNA1310_13286, RNA1509_32569, RNA1509_39797} {RNA1509_32569, RNA1509_39797, RNA815_5134.1}
6. MligTC455_07645 30 0.62 Mlig455_037688

Neo: Int S/G2/M

Age: -

 0.959 0.959 - - - - - Mlig455_037688 {REF} {Length: 227} {NoTransDecoderORF} {RNA1509_26125} {RNA1310_19678} {RNA815_30245}
7. MligTC455_16368 545 11.35 Mlig455_024319

Neo: -

Age: -

 ZNF628 0.957 0.957 - - - - - Mlig455_024319 {REF} {Length: 4468} {TRANSSPLICED} {Pfam: Zinc-finger double domain [PF13465.8, score=45.6]; Zinc finger, C2H2 type [PF00096.28, score=37.3]; C2H2-type zinc finger [PF13894.8, score=31.3]} {Human: ENSG00000197483, ZNF628, zinc finger protein 628, [Score=98.6, Expect=4e-21]; ENSG00000130856, ZNF236, zinc finger protein 236, [Score=98.6, Expect=5e-21]; ENSG00000152454, ZNF256, zinc finger protein 256, [Score=98.6, Expect=3e-21]; ENSG00000122386, ZNF205, zinc finger protein 205, [Score=95.5, Expect=3e-20]; ENSG00000178187, ZNF454, zinc finger protein 454, [Score=95.1, Expect=3e-20]; ENSG00000141040, ZNF287, zinc finger protein 287, [Score=94.7, Expect=6e-20]; ENSG00000102870, ZNF629, zinc finger protein 629, [Score=94.7, Expect=6e-20]} {Mouse: ENSMUSG00000041258, Zfp236, zinc finger protein 236, [Score=97.8, Expect=6e-21]; ENSMUSG00000074406, Zfp628, zinc finger protein 628, [Score=95.9, Expect=2e-20]; ENSMUSG00000045639, Zfp629, zinc finger protein 629, [Score=95.9, Expect=2e-20]; ENSMUSG00000072915, Gm12258, predicted gene 12258, [Score=95.1, Expect=8e-23]; ENSMUSG00000093910, Zfp853, zinc finger protein 853, [Score=95.1, Expect=2e-20]; ENSMUSG00000058291, Zfp68, zinc finger protein 68, [Score=94.7, Expect=4e-20]; ENSMUSG00000059897, Zfp930, zinc finger protein 930, [Score=94.7, Expect=2e-20]; ENSMUSG00000048728, Zfp454, zinc finger protein 454, [Score=93.2, Expect=1e-19]} {Dmel: FBgn0035625, Blimp-1, [Score=92.8, Expect=1e-19]} {Celegans: WBGene00000483, che-1, Transcription factor che-1, [Score=87.4, Expect=5e-19]} {Smed: dd_Smed_v6_85977_0_1, dd_Smed_v6_85977_0_1, [Score=97.4, Expect=9e-24]} {RNA1509_14204, RNA1509_40122} {RNA1310_11199, RNA1509_14204, RNA1509_40122} {RNA1509_14204, RNA1509_40122, RNA815_8539.1}
8. MligTC455_38549 344 7.16 Mlig455_006164, Mlig455_013267, Mlig455_013280, Mlig455_023833, Mlig455_029034, Mlig455_029140, Mlig455_032354, Mlig455_063867, Mlig455_065760

Neo: -

Age: -

 0.957 0.957 - - - - -

Mlig455_006164 {REF} {Length: 866} {Pfam: Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=21.4]} {Smed: dd_Smed_v6_9908_0_3, dd_Smed_v6_9908_0_3, [Score=101, Expect=1e-25]} {RNA1509_13774} {RNA1310_6053.2} {RNA815_18197}

Mlig455_013267 {REF} {Length: 915} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=26.0]} {RNA1509_13774} {RNA1310_6053.2} {RNA815_16908}

Mlig455_013280 {REF} {Length: 524} {Pfam: Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=24.5]} {Smed: dd_Smed_v6_9908_0_1, dd_Smed_v6_9908_0_1, [Score=91.7, Expect=2e-23]} {RNA1509_13774} {RNA1310_6053.2} {RNA815_18197}

Mlig455_023833 {REF} {Length: 1044} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=26.3]} {RNA1509_13774} {RNA1310_6053.2} {RNA815_16908}

Mlig455_029034 {REF} {Length: 728} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=27.2]} {RNA1509_13774} {RNA1310_6053.2} {RNA815_16908}

Mlig455_029140 {REF} {Length: 1376} {Pfam: Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=23.9]} {Smed: dd_Smed_v6_9908_0_1, dd_Smed_v6_9908_0_1, [Score=75.9, Expect=5e-16]} {RNA1509_52826} {RNA1310_8972.1} {RNA815_20093}

Mlig455_032354 {REF} {Length: 1259} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=25.4]} {Smed: dd_Smed_v6_9908_0_3, dd_Smed_v6_9908_0_3, [Score=60.5, Expect=1e-10]} {RNA1509_13774} {RNA1310_6053.2} {RNA815_16908}

Mlig455_063867 {REF} {Length: 7691} {TRANSSPLICED} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=24.4]} {RNA1509_13774} {RNA1310_8972.1} {RNA815_14657}

Mlig455_065760 {REF} {Length: 887} {TRANSSPLICED} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=25.9]} {RNA1509_13774} {RNA1310_6053.2} {RNA815_16908}
9. MligTC455_44749 480 10 Mlig455_017988

Neo: Int S/G2/M

Age: -

 LIPT2 0.955 0.955 - - - - - Mlig455_017988 {REF} {Length: 2697} {TRANSSPLICED} {Human: ENSG00000175536, LIPT2, lipoyl(octanoyl) transferase 2, [RH, Score=164, Expect=3e-46]} {Mouse: ENSMUSG00000030725, Lipt2, lipoyl(octanoyl) transferase 2 (putative), [RH, Score=168, Expect=1e-47]} {Dmel: FBgn0037251, CG9804, [RH, Score=205, Expect=1e-61]} {Celegans: WBGene00003066, lpl-1, LiPoate Ligase; Ny, [RH, Score=181, Expect=1e-52]} {Smed: dd_Smed_v6_8145_0_1, dd_Smed_v6_8145_0_1, [RH, Score=190, Expect=2e-56]} {RNA1509_28130} {RNA1310_21849} {RNA815_986}
10. MligTC455_30795 267 5.55 Mlig455_038560, Mlig455_052196

Neo: -

Age: Down-Up-Down

 0.954 0.954 - - - - -

Mlig455_038560 {REF} {Length: 898} {NoTransDecoderORF} {RNA1509_51837} {RNA1310_28092} {RNA815_16672}

Mlig455_052196 {REF} {Length: 891} {RNA1509_51837} {RNA1310_28092} {RNA815_16672}
11. MligTC455_30796 133 2.77 Mlig455_053456

Neo: -

Age: -

 0.954 0.954 - - - - - Mlig455_053456 {REF} {Length: 2288} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=102.0]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=60.1, Expect=5e-11]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_6291.1}
12. MligTC455_17485 238 4.96 Mlig455_013047

Neo: -

Age: Down-Up-Down

 ARNT 0.951 0.951 - - - - - Mlig455_013047 {REF} {Length: 3020} {TRANSSPLICED} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=49.1]; PAS fold [PF08447.14, score=47.7]; PAS fold [PF00989.27, score=42.6]; PAS fold [PF08448.12, score=29.5]; PAS domain [PF14598.8, score=27.2]} {Human: ENSG00000143437, ARNT, aryl hydrocarbon receptor nuclear translocator, [Score=312, Expect=6e-96]; ENSG00000172379, ARNT2, aryl hydrocarbon receptor nuclear translocator 2, [Score=305, Expect=6e-94]} {Mouse: ENSMUSG00000015522, Arnt, aryl hydrocarbon receptor nuclear translocator, [Score=309, Expect=4e-95]; ENSMUSG00000015709, Arnt2, aryl hydrocarbon receptor nuclear translocator 2, [Score=303, Expect=3e-93]} {Dmel: FBgn0264075, tgo, tango, [Score=325, Expect=2e-102]} {Celegans: WBGene00000095, aha-1, Aryl hydrocarbon receptor nuclear translocator homolog, [Score=256, Expect=1e-78]} {Smed: dd_Smed_v6_9171_0_1, dd_Smed_v6_9171_0_1, [Score=344, Expect=2e-109]} {RNA1509_20140} {RNA1310_12680} {RNA815_8463}
13. MligTC455_32517 153 3.19 Mlig455_064987

Neo: -

Age: Up-Down-Up

 OTUD7B 0.951 0.951 - - - - - Mlig455_064987 {REF} {Length: 3738} {TRANSSPLICED} {Pfam: OTU-like cysteine protease [PF02338.21, score=67.6]; A20-like zinc finger [PF01754.18, score=22.3]} {Human: ENSG00000264522, OTUD7B, OTU deubiquitinase 7B, [RH, Score=251, Expect=6e-72]} {Mouse: ENSMUSG00000038495, Otud7b, OTU domain containing 7B, [RH, Score=251, Expect=5e-72]; ENSMUSG00000033510, Otud7a, OTU domain containing 7A, [RH, Score=247, Expect=1e-71]} {Dmel: FBgn0037734, trbd, trabid, [Score=125, Expect=3e-29]} {Celegans: WBGene00021733, otub-2, OTUBain deubiquitylating protease homolog, [RH, Score=238, Expect=4e-69]} {Smed: dd_Smed_v6_10637_0_1, dd_Smed_v6_10637_0_1, [Score=246, Expect=3e-73]} {RNA1509_13944} {RNA1310_14040.1} {RNA815_8064}
14. MligTC455_42003 140 2.91 Mlig455_022863

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.408

 GFRA3 0.95 0.950 - - - - - Mlig455_022863 {REF} {Length: 4157} {Pfam: GDNF/GAS1 domain [PF02351.18, score=44.8]} {Human: ENSG00000146013, GFRA3, GDNF family receptor alpha 3, [RH, Score=53.9, Expect=7e-07]} {RNA1509_30984} {RNA1310_17179, RNA1509_30984} {RNA1509_30984, RNA815_27672}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA