TomoSeq data search

Data search

Results for MligTC455_42003

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_42003

140

2.91

Mlig455_022863

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.408

GFRA3

Mlig455_022863 {REF} {Length: 4157} {Pfam: GDNF/GAS1 domain [PF02351.18, score=44.8]} {Human: ENSG00000146013, GFRA3, GDNF family receptor alpha 3, [RH, Score=53.9, Expect=7e-07]} {RNA1509_30984} {RNA1310_17179, RNA1509_30984} {RNA1509_30984, RNA815_27672}

Cumulative graph for MligTC455_42003

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.109	2.211	0.59024	1.00000
RegionR2	1.329	2.211	0.09204	0.37219
RegionR3	-1.938	2.211	0.02583	0.27456
RegionR4	-0.392	2.211	0.60052	0.91351
RegionR5	0.279	2.211	0.62526	0.97964
RegionR6	1.15	2.211	0.06032	0.46161
RegionR7	-0.446	2.211	0.68286	1.00000
RegionR8	1.128	2.211	0.26832	0.89179

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-4.184	2.211	0.51193	1.00000
RegenerationR2	-0.352	2.211	0.53498	0.88634
RegenerationR3	1.353	2.211	0.13034	0.55351
RegenerationR4	-1.654	2.211	0.03198	0.28915
RegenerationR5	0.313	2.211	0.59137	0.90629
RegenerationR6	-1.731	2.211	0.02398	0.19254
RegenerationBL	-2.195	2.211	0.08569	0.34309
RegenerationTP	0.273	2.211	0.77896	1.00000

Genes with expression patterns similar to MligTC455_42003

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_42003	140	2.91	Mlig455_022863	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.408	GFRA3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_022863 {REF} {Length: 4157} {Pfam: GDNF/GAS1 domain [PF02351.18, score=44.8]} {Human: ENSG00000146013, GFRA3, GDNF family receptor alpha 3, [RH, Score=53.9, Expect=7e-07]} {RNA1509_30984} {RNA1310_17179, RNA1509_30984} {RNA1509_30984, RNA815_27672}
2.	MligTC455_39265	459	9.57	Mlig455_025157, Mlig455_063935	Neo: - Age: Down-Up-Down	PRX	1.75	-	-	-	0.796	0.954	-	Mlig455_025157 {REF} {Length: 1721} {RNA1509_50938} {RNA1310_45103} {RNA815_28196.1} Mlig455_063935 {REF} {Length: 4827} {Human: ENSG00000105227, PRX, periaxin, [Score=66.6, Expect=3e-10]} {RNA1509_50938} {RNA1310_7875} {RNA815_14212}
3.	MligTC455_40223	172	3.59	Mlig455_016264	Neo: - Age: - Region-enriched R8: 3.704/0.01076	CHRNA10	1.674	-	-	0.704	-	0.970	-	Mlig455_016264 {REF} {Length: 4782} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=169.5]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=109.0]} {Human: ENSG00000129749, CHRNA10, cholinergic receptor nicotinic alpha 10 subunit, [Score=230, Expect=2e-68]; ENSG00000147432, CHRNB3, cholinergic receptor nicotinic beta 3 subunit, [Score=225, Expect=1e-66]} {Mouse: ENSMUSG00000031492, Chrnb3, cholinergic receptor, nicotinic, beta polypeptide 3, [Score=233, Expect=9e-70]} {Dmel: FBgn0032151, nAChRalpha6, nicotinic Acetylcholine Receptor alpha6, [Score=236, Expect=2e-70]} {Celegans: WBGene00000060, acr-21, AcetylCholine Receptor, [Score=215, Expect=6e-63]} {Smed: dd_Smed_v6_31300_0_1, dd_Smed_v6_31300_0_1, [Score=280, Expect=9e-87]} {RNA1509_35668} {RNA1310_11720.1} {RNA815_6827}
4.	MligTC455_38756	1625	33.85	Mlig455_004697, Mlig455_004770, Mlig455_004857	Neo: - Age: - Regeneration-upregulated BL: 1.787 Regeneration-enriched BL: 1.787		0.97	-	-	-	-	0.970	-	Mlig455_004697 {REF} {Length: 1892} {RNA1509_45157} {RNA1310_17382} {RNA815_6935.1} Mlig455_004770 {REF} {Length: 1735} {RNA1509_45157} {RNA1310_17382} {RNA815_6935.1} Mlig455_004857 {REF} {Length: 3173} {TRANSSPLICED} {Dmel: FBgn0032748, CG10492, [Score=56.2, Expect=1e-07]} {Smed: dd_Smed_v6_11680_0_1, dd_Smed_v6_11680_0_1, [RH, Score=48.5, Expect=1e-05]} {RNA1509_11543, RNA1509_45157} {RNA1310_16859.1, RNA1509_11543, RNA1509_45157} {RNA1509_11543, RNA1509_45157, RNA815_6935.1}
5.	MligTC455_18470	514	10.71	Mlig455_043915	Neo: - Age: -		0.968	-	-	-	-	0.968	-	Mlig455_043915 {REF} {Length: 1376} {RNA1509_15794, RNA1509_31295, RNA1509_46879, RNA1509_48240} {RNA1310_29921.1, RNA1509_15794, RNA1509_31295, RNA1509_46879, RNA1509_48240} {RNA1509_15794, RNA1509_31295, RNA1509_46879, RNA1509_48240, RNA815_24315}
6.	MligTC455_46780	396	8.26	Mlig455_044008	Neo: - Age: Up-Down-Down		0.957	-	-	-	-	0.957	-	Mlig455_044008 {REF} {Length: 5261} {TRANSSPLICED} {Pfam: C2 domain [PF00168.32, score=28.9]} {Dmel: FBgn0034420, CG10737, [RH, Score=70.9, Expect=4e-12]} {Smed: dd_Smed_v6_6358_0_1, dd_Smed_v6_6358_0_1, [Score=55.1, Expect=1e-07]} {RNA1509_17372} {RNA1310_6655, RNA1509_17372} {RNA1509_17372, RNA815_21591}
7.	MligTC455_16957	20	0.41	Mlig455_018871	Neo: - Age: -		0.952	-	-	-	-	0.952	-	Mlig455_018871 {REF} {Length: 844} {NoTransDecoderORF} {RNA1509_20438} {RNA1310_96400} {RNA815_29237}
8.	MligTC455_41039	820	17.08	Mlig455_012731	Neo: - Age: -	FLRT1	0.952	-	-	-	-	0.952	-	Mlig455_012731 {REF} {Length: 2045} {Pfam: Leucine rich repeat [PF13855.8, score=60.6]; Leucine Rich repeats (2 copies) [PF12799.9, score=47.8]; Leucine-rich repeat [PF14580.8, score=22.6]} {Human: ENSG00000126500, FLRT1, fibronectin leucine rich transmembrane protein 1, [Score=67.4, Expect=3e-11]; ENSG00000187122, SLIT1, slit guidance ligand 1, [Score=67.0, Expect=6e-11]; ENSG00000011465, DCN, decorin, [Score=66.2, Expect=4e-11]; ENSG00000184347, SLIT3, slit guidance ligand 3, [Score=65.5, Expect=2e-10]} {Mouse: ENSMUSG00000056427, Slit3, slit guidance ligand 3, [Score=67.0, Expect=4e-11]; ENSMUSG00000025020, Slit1, slit guidance ligand 1, [Score=66.6, Expect=6e-11]; ENSMUSG00000047787, Flrt1, fibronectin leucine rich transmembrane protein 1, [Score=66.2, Expect=6e-11]} {Dmel: FBgn0036995, atk, artichoke, [Score=64.7, Expect=2e-10]} {Celegans: WBGene00020649, sma-10, Leucine-rich repeats and immunoglobulin-like domains protein sma-10, [Score=72.4, Expect=4e-13]} {Smed: dd_Smed_v6_12111_0_1, dd_Smed_v6_12111_0_1, [Score=64.3, Expect=1e-10]} {RNA1509_45627, RNA1509_8353} {RNA1310_14213, RNA1509_45627, RNA1509_8353} {RNA1509_45627, RNA1509_8353, RNA815_5583}
9.	MligTC455_45969	1220	25.42	Mlig455_045083	Neo: - Age: -		0.95	-	-	-	-	0.950	-	Mlig455_045083 {REF} {Length: 2063} {TRANSSPLICED} {RNA1509_16069, RNA1509_41818, RNA1509_49053, RNA1509_56846} {RNA1310_17143, RNA1509_41818, RNA1509_49053, RNA1509_56846} {RNA1509_41818, RNA1509_49053, RNA1509_56846, RNA815_14588}
10.	MligTC455_48597	279	5.8	Mlig455_053761	Neo: - Age: logFC(26M/2M)=0.422 Regeneration-downregulated R6: -2.401 Regeneration-depleted R6: -2.401	LIMA1	0.95	-	-	-	-	0.950	-	Mlig455_053761 {REF} {Length: 1783} {Pfam: LIM domain [PF00412.24, score=52.9]} {Human: ENSG00000050405, LIMA1, LIM domain and actin binding 1, [Score=75.1, Expect=4e-17]} {Mouse: ENSMUSG00000023022, Lima1, LIM domain and actin binding 1, [Score=73.6, Expect=1e-16]; ENSMUSG00000030470, Csrp3, cysteine and glycine-rich protein 3, [Score=70.5, Expect=2e-16]} {Dmel: FBgn0259209, Mlp60A, Muscle LIM protein at 60A, [Score=60.5, Expect=2e-13]} {Celegans: WBGene00003375, mlp-1, MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein), [Score=68.2, Expect=1e-16]} {Smed: dd_Smed_v6_537_0_1, dd_Smed_v6_537_0_1, [RH, Score=111, Expect=5e-34]} {RNA1509_38710} {RNA1310_37566} {RNA815_20664}
11.	MligTC455_52620	26	0.54	Mlig455_024895	Neo: - Age: -	PCF11	0.95	0.950	-	-	-	-	-	Mlig455_024895 {REF} {Length: 3676} {Pfam: CID domain [PF04818.15, score=23.4]} {Human: ENSG00000165494, PCF11, PCF11, cleavage and polyadenylation factor subunit, [Score=84.7, Expect=5e-16]} {Mouse: ENSMUSG00000041328, Pcf11, PCF11 cleavage and polyadenylation factor subunit, [Score=89.7, Expect=1e-17]} {Dmel: FBgn0264962, Pcf11, Protein 1 of cleavage and polyadenylation factor 1, [Score=65.9, Expect=2e-10]} {Celegans: WBGene00020092, pcf-11, Polyadenylation and cleavage factor homolog 11, [Score=58.2, Expect=2e-08]} {Smed: dd_Smed_v6_3280_0_1, dd_Smed_v6_3280_0_1, [Score=125, Expect=2e-29]} {RNA1509_14664} {RNA1310_4848.1, RNA1509_14664} {RNA1509_14664, RNA815_5846}

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