TomoSeq data search

Data search

Results for MligTC455_52638

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_52638

55

1.15

Mlig455_013830, Mlig455_059928

Neo: -

Age: -

Mlig455_013830 {REF} {Length: 4150} {Pfam: OB-fold nucleic acid binding domain [PF01336.27, score=32.8]} {Celegans: WBGene00017546, rpa-1, Probable replication factor A 73 kDa subunit, [Score=53.1, Expect=2e-09]} {Smed: dd_Smed_v6_3342_0_1, dd_Smed_v6_3342_0_1, [Score=57.8, Expect=4e-11]} {RNA1509_30354} {RNA1310_40374} {RNA815_53737}

Mlig455_059928 {REF} {Length: 3973} {Pfam: OB-fold nucleic acid binding domain [PF01336.27, score=32.8]} {Celegans: WBGene00017546, rpa-1, Probable replication factor A 73 kDa subunit, [Score=53.1, Expect=2e-09]} {Smed: dd_Smed_v6_3342_0_1, dd_Smed_v6_3342_0_1, [Score=57.8, Expect=4e-11]} {RNA1509_30354} {RNA1310_40374} {RNA815_53737}

Cumulative graph for MligTC455_52638

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-4.678	1.393	0.99959	1.00000
RegionR2	3.672	1.393	0.03732	0.22353
RegionR3	1.342	1.393	0.29638	0.83805
RegionR4	-0.285	1.393	0.77699	1.00000
RegionR5	1.039	1.393	0.37355	0.72668
RegionR6	0.807	1.393	0.49537	1.00000
RegionR7	-1.106	1.393	0.99971	1.00000
RegionR8	-0.791	1.393	0.99957	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	3.868	1.393	0.99981	1.00000
RegenerationR2	0.393	1.393	0.75339	0.97449
RegenerationR3	2.657	1.393	0.02706	0.29586
RegenerationR4	2.09	1.393	0.06654	0.41146
RegenerationR5	2.383	1.393	0.01052	0.18129
RegenerationR6	2.999	1.393	0.02742	0.20692
RegenerationBL	5.85	1.393	0.00054	0.01484
RegenerationTP	6.569	1.393	0.00147	0.06002

Genes with expression patterns similar to MligTC455_52638

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_52638	55	1.15	Mlig455_013830, Mlig455_059928	Neo: - Age: -		5	1.000	1.000	-	1.000	1.000	1.000	Mlig455_013830 {REF} {Length: 4150} {Pfam: OB-fold nucleic acid binding domain [PF01336.27, score=32.8]} {Celegans: WBGene00017546, rpa-1, Probable replication factor A 73 kDa subunit, [Score=53.1, Expect=2e-09]} {Smed: dd_Smed_v6_3342_0_1, dd_Smed_v6_3342_0_1, [Score=57.8, Expect=4e-11]} {RNA1509_30354} {RNA1310_40374} {RNA815_53737} Mlig455_059928 {REF} {Length: 3973} {Pfam: OB-fold nucleic acid binding domain [PF01336.27, score=32.8]} {Celegans: WBGene00017546, rpa-1, Probable replication factor A 73 kDa subunit, [Score=53.1, Expect=2e-09]} {Smed: dd_Smed_v6_3342_0_1, dd_Smed_v6_3342_0_1, [Score=57.8, Expect=4e-11]} {RNA1509_30354} {RNA1310_40374} {RNA815_53737}
2.	MligTC455_10254	139	2.9	Mlig455_036134	Neo: Irradiation Age: -		0.996	-	-	-	0.996	-	-	Mlig455_036134 {REF} {Length: 892} {NoTransDecoderORF} {RNA1509_3689} {RNA1310_47816} {RNA815_22951.1}
3.	MligTC455_39172	41	0.86	Mlig455_043927	Neo: Irradiation Age: Up-Down-Down Region-enriched R4: 3.276/0.02206		0.976	-	-	-	0.976	-	-	Mlig455_043927 {REF} {Length: 1153} {RNA1509_1029} {RNA1310_32039} {RNA815_16431}
4.	MligTC455_17516	39	0.8	Mlig455_054636, Mlig455_054645	Neo: - Age: Up-Down-Up	DHX8	0.973	-	-	-	0.973	-	-	Mlig455_054636 {REF} {Length: 5827} {Pfam: Helicase conserved C-terminal domain [PF00271.33, score=57.6]; IBR domain, a half RING-finger domain [PF01485.23, score=48.9]; Helicase associated domain (HA2) [PF04408.25, score=40.0]; Oligonucleotide/oligosaccharide-binding (OB)-fold [PF07717.18, score=34.0]; DEAD/DEAH box helicase [PF00270.31, score=32.6]; Ring finger domain [PF13639.8, score=19.6]; zinc-RING finger domain [PF14634.8, score=19.4]; RING-type zinc-finger [PF13445.8, score=19.3]} {Human: ENSG00000067596, DHX8, DEAH-box helicase 8, [Score=351, Expect=1e-99]; ENSG00000233418, DHX16, DEAH-box helicase 16, [Score=348, Expect=7e-100]; ENSG00000231377, DHX16, DEAH-box helicase 16, [Score=348, Expect=7e-100]; ENSG00000226171, DHX16, DEAH-box helicase 16, [Score=348, Expect=7e-100]; ENSG00000233049, DHX16, DEAH-box helicase 16, [Score=348, Expect=7e-100]; ENSG00000204560, DHX16, DEAH-box helicase 16, [Score=348, Expect=7e-100]; ENSG00000233561, DHX16, DEAH-box helicase 16, [Score=348, Expect=7e-100]; ENSG00000140829, DHX38, DEAH-box helicase 38, [Score=347, Expect=3e-98]; ENSG00000206486, DHX16, DEAH-box helicase 16, [Score=346, Expect=4e-99]; ENSG00000109606, DHX15, DEAH-box helicase 15, [Score=334, Expect=4e-97]} {Mouse: ENSMUSG00000034931, Dhx8, DEAH (Asp-Glu-Ala-His) box polypeptide 8, [Score=352, Expect=7e-100]; ENSMUSG00000024422, Dhx16, DEAH (Asp-Glu-Ala-His) box polypeptide 16, [Score=349, Expect=3e-100]; ENSMUSG00000037993, Dhx38, DEAH (Asp-Glu-Ala-His) box polypeptide 38, [Score=346, Expect=6e-98]} {Dmel: FBgn0086444, l(2)37Cb, lethal (2) 37Cb, [Score=351, Expect=3e-102]} {Celegans: WBGene00003393, mog-5, Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5, [Score=356, Expect=1e-101]} {Smed: dd_Smed_v6_8181_0_1, dd_Smed_v6_8181_0_1, [Score=370, Expect=1e-106]} {RNA1509_5727} {RNA1310_864.1} {RNA815_215} Mlig455_054645 {REF} {Length: 5938} {Pfam: Helicase conserved C-terminal domain [PF00271.33, score=57.6]; IBR domain, a half RING-finger domain [PF01485.23, score=48.9]; Helicase associated domain (HA2) [PF04408.25, score=40.0]; Oligonucleotide/oligosaccharide-binding (OB)-fold [PF07717.18, score=34.0]; DEAD/DEAH box helicase [PF00270.31, score=32.6]; Ring finger domain [PF13639.8, score=19.6]; zinc-RING finger domain [PF14634.8, score=19.4]; RING-type zinc-finger [PF13445.8, score=19.3]} {Human: ENSG00000067596, DHX8, DEAH-box helicase 8, [Score=351, Expect=1e-99]; ENSG00000233418, DHX16, DEAH-box helicase 16, [Score=348, Expect=7e-100]; ENSG00000231377, DHX16, DEAH-box helicase 16, [Score=348, Expect=7e-100]; ENSG00000226171, DHX16, DEAH-box helicase 16, [Score=348, Expect=7e-100]; ENSG00000233049, DHX16, DEAH-box helicase 16, [Score=348, Expect=7e-100]; ENSG00000204560, DHX16, DEAH-box helicase 16, [Score=348, Expect=7e-100]; ENSG00000233561, DHX16, DEAH-box helicase 16, [Score=348, Expect=7e-100]; ENSG00000140829, DHX38, DEAH-box helicase 38, [Score=347, Expect=3e-98]; ENSG00000206486, DHX16, DEAH-box helicase 16, [Score=346, Expect=4e-99]; ENSG00000109606, DHX15, DEAH-box helicase 15, [Score=334, Expect=4e-97]} {Mouse: ENSMUSG00000034931, Dhx8, DEAH (Asp-Glu-Ala-His) box polypeptide 8, [Score=352, Expect=7e-100]; ENSMUSG00000024422, Dhx16, DEAH (Asp-Glu-Ala-His) box polypeptide 16, [Score=349, Expect=3e-100]; ENSMUSG00000037993, Dhx38, DEAH (Asp-Glu-Ala-His) box polypeptide 38, [Score=346, Expect=6e-98]} {Dmel: FBgn0086444, l(2)37Cb, lethal (2) 37Cb, [Score=351, Expect=3e-102]} {Celegans: WBGene00003393, mog-5, Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5, [Score=356, Expect=1e-101]} {Smed: dd_Smed_v6_8181_0_1, dd_Smed_v6_8181_0_1, [Score=370, Expect=1e-106]} {RNA1509_44680, RNA1509_5727} {RNA1310_864.1, RNA1509_44680} {RNA1509_44680, RNA815_215}
5.	MligTC455_39158	46	0.97	Mlig455_052312	Neo: - Age: -	UNC93A	0.973	-	-	-	0.973	-	-	Mlig455_052312 {REF} {Length: 1515} {Pfam: Major Facilitator Superfamily [PF07690.18, score=40.4]} {Human: ENSG00000112494, UNC93A, unc-93 homolog A, [Score=169, Expect=6e-47]} {Mouse: ENSMUSG00000056133, Unc93a2, unc-93 homolog A2, [Score=162, Expect=1e-44]; ENSMUSG00000067049, Unc93a, unc-93 homolog A, [Score=162, Expect=2e-44]} {Dmel: FBgn0027556, CG4928, [Score=197, Expect=3e-57]} {Celegans: WBGene00006822, unc-93, Putative potassium channel regulatory protein unc-93, [Score=145, Expect=2e-37]} {RNA1310_8603.1} {RNA815_11843}
6.	MligTC455_41680	26	0.53	Mlig455_058492	Neo: - Age: Down-Up-Down	MPC1	0.971	-	-	-	0.971	-	-	Mlig455_058492 {REF} {Length: 1288} {TRANSSPLICED} {Pfam: Mitochondrial pyruvate carriers [PF03650.15, score=119.1]} {Human: ENSG00000060762, MPC1, mitochondrial pyruvate carrier 1, [RH, Score=136, Expect=6e-42]} {Mouse: ENSMUSG00000023861, Mpc1, mitochondrial pyruvate carrier 1, [RH, Score=139, Expect=2e-43]} {Dmel: FBgn0038662, Mpc1, Mitochondrial pyruvate carrier, [RH, Score=135, Expect=6e-42]} {Celegans: WBGene00011119, mpc-1, Probable mitochondrial pyruvate carrier 1, [RH, Score=142, Expect=3e-44]} {Smed: dd_Smed_v6_2127_0_1, dd_Smed_v6_2127_0_1, [RH, Score=175, Expect=8e-58]} {RNA1509_12486} {RNA1310_9093} {RNA815_8014}
7.	MligTC455_24718	65	1.35	Mlig455_015385	Neo: - Age: -	COG7	0.97	-	-	-	-	0.970	-	Mlig455_015385 {REF} {Length: 4070} {Pfam: Golgi complex component 7 (COG7) [PF10191.11, score=297.7]} {Human: ENSG00000168434, COG7, component of oligomeric golgi complex 7, [RH, Score=217, Expect=2e-59]} {Mouse: ENSMUSG00000034951, Cog7, component of oligomeric golgi complex 7, [RH, Score=210, Expect=3e-57]} {Dmel: FBgn0051040, Cog7, [RH, Score=141, Expect=2e-34]} {Smed: dd_Smed_v6_3661_0_1, dd_Smed_v6_3661_0_1, [RH, Score=241, Expect=2e-68]} {RNA1509_16994} {RNA1310_8228.1} {RNA815_3568}
8.	MligTC455_06320	14	0.29	Mlig455_029459	Neo: - Age: -		0.961	-	-	-	0.961	-	-	Mlig455_029459 {REF} {Length: 2352} {RNA1509_17934} {RNA1310_2972.1} {RNA815_23370.1}
9.	MligTC455_13163	441	9.19	Mlig455_014952, Mlig455_045139, Mlig455_045175	Neo: Germline Age: Up-Down-Down		0.961	-	-	-	0.961	-	-	Mlig455_014952 {REF} {Length: 1185} {RNA1509_23568} {RNA1310_59807} {RNA815_51781} Mlig455_045139 {REF} {Length: 1184} {RNA1509_23568} {RNA1310_59807} {RNA815_51781} Mlig455_045175 {REF} {Length: 1176} {RNA1509_23568} {RNA1310_59807} {RNA815_51781}
10.	MligTC455_17096	145	3.03	Mlig455_032374, Mlig455_032416	Neo: - Age: -	ANKRD39	0.96	-	-	-	0.960	-	-	Mlig455_032374 {REF} {Length: 2034} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=109.1]; Ankyrin repeats (many copies) [PF13637.8, score=95.7]; Ankyrin repeats (many copies) [PF13857.8, score=68.3]; Ankyrin repeat [PF00023.32, score=61.6]; Ankyrin repeat [PF13606.8, score=58.4]} {Human: ENSG00000213337, ANKRD39, ankyrin repeat domain 39, [RH, Score=123, Expect=1e-35]} {Mouse: ENSMUSG00000079610, Ankrd39, ankyrin repeat domain 39, [RH, Score=128, Expect=7e-38]} {Dmel: FBgn0264743, CG44001, [RH, Score=103, Expect=2e-28]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=71.6, Expect=5e-15]} {Smed: dd_Smed_v6_11856_0_1, dd_Smed_v6_11856_0_1, [RH, Score=121, Expect=7e-36]} {RNA1509_48457} {RNA1310_45113.1} {RNA815_60764} Mlig455_032416 {REF} {Length: 1099} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=110.0]; Ankyrin repeats (many copies) [PF13637.8, score=99.3]; Ankyrin repeats (many copies) [PF13857.8, score=68.3]; Ankyrin repeat [PF00023.32, score=61.6]; Ankyrin repeat [PF13606.8, score=58.4]} {Human: ENSG00000213337, ANKRD39, ankyrin repeat domain 39, [RH, Score=122, Expect=2e-35]} {Mouse: ENSMUSG00000079610, Ankrd39, ankyrin repeat domain 39, [RH, Score=128, Expect=1e-37]} {Dmel: FBgn0264743, CG44001, [RH, Score=103, Expect=3e-28]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=71.6, Expect=5e-15]} {Smed: dd_Smed_v6_11856_0_1, dd_Smed_v6_11856_0_1, [RH, Score=121, Expect=8e-36]} {RNA1509_48457} {RNA1310_45113.1} {RNA815_58210}
11.	MligTC455_28840	138	2.87	Mlig455_009294	Neo: - Age: Up-Down-Up		0.96	-	-	-	-	0.960	-	Mlig455_009294 {REF} {Length: 2701} {RNA1509_41127} {RNA1310_36587.1} {RNA815_7423}
12.	MligTC455_12651	877	18.27	Mlig455_061117	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.727		0.957	-	-	-	-	0.957	-	Mlig455_061117 {REF} {Length: 921} {Pfam: Kazal-type serine protease inhibitor domain [PF00050.23, score=30.1]} {RNA1509_16147} {RNA1310_40437} {RNA815_22118}
13.	MligTC455_45568	73	1.52	Mlig455_045036	Neo: Int S/G2/M Age: Up-Down-Up Region-enriched R5: 2.439/0.00238	PRDX2	0.957	-	-	-	0.957	-	-	Mlig455_045036 {REF} {Length: 1089} {TRANSSPLICED} {Pfam: AhpC/TSA family [PF00578.23, score=126.9]; Redoxin [PF08534.12, score=59.0]; C-terminal domain of 1-Cys peroxiredoxin [PF10417.11, score=52.3]} {Human: ENSG00000167815, PRDX2, peroxiredoxin 2, [RH, Score=271, Expect=8e-92]} {Mouse: ENSMUSG00000005161, Prdx2, peroxiredoxin 2, [RH, Score=277, Expect=2e-94]} {Dmel: FBgn0040309, Jafrac1, thioredoxin peroxidase 1, [Score=268, Expect=4e-91]} {Celegans: WBGene00006434, prdx-2, PeRoxireDoXin, [Score=262, Expect=9e-89]} {Smed: dd_Smed_v6_7781_0_2, dd_Smed_v6_7781_0_2, [RH, Score=284, Expect=1e-97]} {RNA1509_41676} {RNA1310_17406, RNA1509_41676} {RNA1509_41676, RNA815_10619}
14.	MligTC455_52787	48	1	Mlig455_052115, Mlig455_054117	Neo: Int S/G2/M Age: Up-Down-Up, logFC(26M/2M)=0.454	NDUFAF7	0.957	-	-	-	0.957	-	-	Mlig455_052115 {REF} {Length: 2507} {TRANSSPLICED} {Pfam: Putative S-adenosyl-L-methionine-dependent methyltransferase [PF02636.19, score=173.8]} {Human: ENSG00000003509, NDUFAF7, NADH:ubiquinone oxidoreductase complex assembly factor 7, [RH, Score=257, Expect=6e-81]} {Mouse: ENSMUSG00000024082, Ndufaf7, NADH:ubiquinone oxidoreductase complex assembly factor 7, [RH, Score=261, Expect=7e-83]} {Dmel: FBgn0037880, CG17726, [RH, Score=237, Expect=1e-73]} {Celegans: WBGene00014227, ZK1128.1, Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial, [RH, Score=202, Expect=1e-60]} {Smed: dd_Smed_v6_10508_0_1, dd_Smed_v6_10508_0_1, [RH, Score=245, Expect=2e-77]} {RNA1509_44403} {RNA1310_21801, RNA1509_44403} {RNA1509_44403, RNA815_5908} Mlig455_054117 {REF} {Length: 2019} {Pfam: Putative S-adenosyl-L-methionine-dependent methyltransferase [PF02636.19, score=174.4]} {Human: ENSG00000003509, NDUFAF7, NADH:ubiquinone oxidoreductase complex assembly factor 7, [Score=190, Expect=1e-55]} {Mouse: ENSMUSG00000024082, Ndufaf7, NADH:ubiquinone oxidoreductase complex assembly factor 7, [Score=194, Expect=2e-57]} {Dmel: FBgn0037880, CG17726, [Score=169, Expect=5e-48]} {Celegans: WBGene00014227, ZK1128.1, Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial, [Score=147, Expect=6e-40]} {Smed: dd_Smed_v6_10508_0_1, dd_Smed_v6_10508_0_1, [Score=177, Expect=1e-51]} {RNA1509_44403} {RNA1310_23552} {RNA815_5908}
15.	MligTC455_32011	104	2.18	Mlig455_027366	Neo: - Age: - Region-enriched R5: 3.000/0.00093	EXT1	0.955	-	-	-	-	0.955	-	Mlig455_027366 {REF} {Length: 3069} {TRANSSPLICED} {Pfam: Exostosin family [PF03016.17, score=191.2]; Glycosyl transferase family 64 domain [PF09258.12, score=69.6]} {Human: ENSG00000182197, EXT1, exostosin glycosyltransferase 1, [RH, Score=443, Expect=9e-145]} {Mouse: ENSMUSG00000061731, Ext1, exostoses (multiple) 1, [RH, Score=444, Expect=3e-145]} {Dmel: FBgn0265974, ttv, tout-velu, [RH, Score=474, Expect=3e-157]} {Celegans: WBGene00004360, rib-1, Exostosin-1 homolog, [RH, Score=319, Expect=3e-102]} {Smed: dd_Smed_v6_11944_0_1, dd_Smed_v6_11944_0_1, [RH, Score=384, Expect=2e-126]} {RNA1509_20261} {RNA1310_9259.1} {RNA815_8522.1}
16.	MligTC455_09555	530	11.05	Mlig455_046149	Neo: Irradiation Age: Up-Down-Down Region-specific R4: 5.371 Region-enriched R4: 2.820/0.00001 Regeneration-downregulated R4: -2.473 Regeneration-depleted R4: -2.473		0.95	-	-	-	0.950	-	-	Mlig455_046149 {REF} {Length: 3133} {RNA1509_25242, RNA1509_34940, RNA1509_50428} {RNA1310_33337, RNA1509_25242, RNA1509_34940, RNA1509_50428} {RNA1509_25242, RNA1509_34940, RNA1509_50428, RNA815_16747}

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