M. lignano Tomo-Seq
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Results for MligTC455_52655

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_52655 410 8.53 Mlig455_019237, Mlig455_035541

Neo: -

Age: -

 PXDN

Mlig455_019237 {REF} {Length: 3563} {Pfam: Animal haem peroxidase [PF03098.17, score=611.8]; Immunoglobulin domain [PF13927.8, score=51.1]; Immunoglobulin I-set domain [PF07679.18, score=38.0]; Immunoglobulin domain [PF00047.27, score=37.1]} {Human: ENSG00000130508, PXDN, peroxidasin, [RH, Score=749, Expect=0.0]} {Mouse: ENSMUSG00000020674, Pxdn, peroxidasin, [RH, Score=735, Expect=0.0]} {Dmel: FBgn0011828, Pxn, Peroxidasin, [RH, Score=673, Expect=0.0]} {Celegans: WBGene00004256, pxn-1, Peroxidasin homolog, [RH, Score=648, Expect=0.0]} {Smed: dd_Smed_v6_3603_0_1, dd_Smed_v6_3603_0_1, [RH, Score=852, Expect=0.0]} {RNA1509_23355} {RNA1310_15949} {RNA815_14560}

Mlig455_035541 {REF} {Length: 4018} {Pfam: Animal haem peroxidase [PF03098.17, score=613.2]; Immunoglobulin domain [PF13927.8, score=51.2]; Immunoglobulin I-set domain [PF07679.18, score=39.6]; Immunoglobulin domain [PF00047.27, score=37.4]} {Human: ENSG00000130508, PXDN, peroxidasin, [RH, Score=746, Expect=0.0]} {Mouse: ENSMUSG00000020674, Pxdn, peroxidasin, [RH, Score=732, Expect=0.0]} {Dmel: FBgn0011828, Pxn, Peroxidasin, [RH, Score=670, Expect=0.0]} {Celegans: WBGene00004256, pxn-1, Peroxidasin homolog, [RH, Score=646, Expect=0.0]} {Smed: dd_Smed_v6_3603_0_1, dd_Smed_v6_3603_0_1, [RH, Score=850, Expect=0.0]} {RNA1509_23355} {RNA1310_15949} {RNA815_14560}

Cumulative graph for MligTC455_52655

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.288 3.515 0.10363 0.67760
RegionR2 1.734 3.515 0.03168 0.20190
RegionR3 0.519 3.515 0.56357 1.00000
RegionR4 0.165 3.515 0.78459 1.00000
RegionR5 -0.557 3.515 0.96113 1.00000
RegionR6 1.073 3.515 0.18352 0.74785
RegionR7 1.81 3.515 0.02166 0.27409
RegionR8 1.545 3.515 0.12246 0.64284

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.141 3.515 0.99999 1.00000
RegenerationR2 0.165 3.515 0.73012 0.96570
RegenerationR3 0.817 3.515 0.15024 0.57957
RegenerationR4 1.03 3.515 0.07248 0.42826
RegenerationR5 0.964 3.515 0.09919 0.48084
RegenerationR6 0.687 3.515 0.20653 0.54900
RegenerationBL -1.783 3.515 0.02409 0.17047
RegenerationTP -0.845 3.515 0.23193 0.67717


Genes with expression patterns similar to MligTC455_52655

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_52655 410 8.53 Mlig455_019237, Mlig455_035541

Neo: -

Age: -

 PXDN 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_019237 {REF} {Length: 3563} {Pfam: Animal haem peroxidase [PF03098.17, score=611.8]; Immunoglobulin domain [PF13927.8, score=51.1]; Immunoglobulin I-set domain [PF07679.18, score=38.0]; Immunoglobulin domain [PF00047.27, score=37.1]} {Human: ENSG00000130508, PXDN, peroxidasin, [RH, Score=749, Expect=0.0]} {Mouse: ENSMUSG00000020674, Pxdn, peroxidasin, [RH, Score=735, Expect=0.0]} {Dmel: FBgn0011828, Pxn, Peroxidasin, [RH, Score=673, Expect=0.0]} {Celegans: WBGene00004256, pxn-1, Peroxidasin homolog, [RH, Score=648, Expect=0.0]} {Smed: dd_Smed_v6_3603_0_1, dd_Smed_v6_3603_0_1, [RH, Score=852, Expect=0.0]} {RNA1509_23355} {RNA1310_15949} {RNA815_14560}

Mlig455_035541 {REF} {Length: 4018} {Pfam: Animal haem peroxidase [PF03098.17, score=613.2]; Immunoglobulin domain [PF13927.8, score=51.2]; Immunoglobulin I-set domain [PF07679.18, score=39.6]; Immunoglobulin domain [PF00047.27, score=37.4]} {Human: ENSG00000130508, PXDN, peroxidasin, [RH, Score=746, Expect=0.0]} {Mouse: ENSMUSG00000020674, Pxdn, peroxidasin, [RH, Score=732, Expect=0.0]} {Dmel: FBgn0011828, Pxn, Peroxidasin, [RH, Score=670, Expect=0.0]} {Celegans: WBGene00004256, pxn-1, Peroxidasin homolog, [RH, Score=646, Expect=0.0]} {Smed: dd_Smed_v6_3603_0_1, dd_Smed_v6_3603_0_1, [RH, Score=850, Expect=0.0]} {RNA1509_23355} {RNA1310_15949} {RNA815_14560}
2. MligTC455_39708 428 8.91 Mlig455_037474, Mlig455_044499

Neo: -

Age: -

Region-enriched R4: 3.201/0.00580

 LIMD1 1.677 0.711 - - - 0.966 -

Mlig455_037474 {REF} {Length: 2250} {Pfam: LIM domain [PF00412.24, score=93.6]} {Human: ENSG00000144791, LIMD1, LIM domains containing 1, [RH, Score=236, Expect=3e-70]; ENSG00000142279, WTIP, WT1 interacting protein, [RH, Score=229, Expect=1e-69]} {Mouse: ENSMUSG00000025239, Limd1, LIM domains containing 1, [RH, Score=237, Expect=2e-70]; ENSMUSG00000036459, Wtip, WT1-interacting protein, [RH, Score=230, Expect=9e-71]} {Dmel: FBgn0030530, jub, Ajuba LIM protein, [RH, Score=238, Expect=2e-70]} {Celegans: WBGene00006999, zyx-1, Zyxin, [RH, Score=159, Expect=2e-42]} {Smed: dd_Smed_v6_9489_0_2, dd_Smed_v6_9489_0_2, [RH, Score=209, Expect=1e-62]} {RNA1509_31264} {RNA1310_14704.1} {RNA815_28506.1}

Mlig455_044499 {REF} {Length: 3868} {Pfam: LIM domain [PF00412.24, score=93.4]; Protein of unknown function (DUF2722) [PF10846.10, score=27.4]} {Human: ENSG00000144791, LIMD1, LIM domains containing 1, [RH, Score=239, Expect=3e-71]; ENSG00000142279, WTIP, WT1 interacting protein, [RH, Score=231, Expect=2e-70]} {Mouse: ENSMUSG00000025239, Limd1, LIM domains containing 1, [RH, Score=239, Expect=2e-71]; ENSMUSG00000036459, Wtip, WT1-interacting protein, [RH, Score=233, Expect=8e-72]} {Dmel: FBgn0030530, jub, Ajuba LIM protein, [RH, Score=239, Expect=3e-71]} {Celegans: WBGene00006999, zyx-1, Zyxin, [RH, Score=159, Expect=1e-42]} {Smed: dd_Smed_v6_9489_0_1, dd_Smed_v6_9489_0_1, [RH, Score=208, Expect=2e-62]} {RNA1310_14704.1} {RNA815_28506.1}
3. MligTC455_29138 150 3.13 Mlig455_047030

Neo: -

Age: Up-Down-Up

 EFR3A 0.961 - - - - 0.961 - Mlig455_047030 {REF} {Length: 5267} {TRANSSPLICED} {Pfam: ZIP Zinc transporter [PF02535.24, score=66.2]} {Human: ENSG00000132294, EFR3A, EFR3 homolog A, [RH, Score=343, Expect=2e-103]; ENSG00000084710, EFR3B, EFR3 homolog B, [RH, Score=327, Expect=2e-97]} {Mouse: ENSMUSG00000015002, Efr3a, EFR3 homolog A, [Score=346, Expect=4e-104]} {Dmel: FBgn0086784, stmA, stambha A, [Score=315, Expect=4e-93]} {Celegans: WBGene00016311, C32D5.3, Protein EFR3 homolog, [Score=249, Expect=2e-69]} {Smed: dd_Smed_v6_3212_0_1, dd_Smed_v6_3212_0_1, [RH, Score=397, Expect=5e-123]} {RNA1509_14238} {RNA1310_2165.2} {RNA815_4536}
4. MligTC455_40427 305 6.35 Mlig455_000333, Mlig455_067934

Neo: -

Age: -

 CDK14 0.959 - - - - 0.959 -

Mlig455_000333 {REF} {Length: 2008} {Pfam: Protein kinase domain [PF00069.27, score=224.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=109.2]; SOCE-associated regulatory factor of calcium homoeostasis [PF06682.14, score=20.9]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=20.2]; Macoilin family [PF09726.11, score=20.0]} {Human: ENSG00000058091, CDK14, cyclin dependent kinase 14, [Score=394, Expect=3e-133]} {Mouse: ENSMUSG00000028926, Cdk14, cyclin-dependent kinase 14, [Score=394, Expect=2e-133]} {Dmel: FBgn0005640, Eip63E, Ecdysone-induced protein 63E, [Score=387, Expect=2e-129]} {Celegans: WBGene00003961, pct-1, Cyclin-dependent kinase 17, [Score=325, Expect=6e-105]} {Smed: dd_Smed_v6_11023_0_1, dd_Smed_v6_11023_0_1, [Score=410, Expect=4e-136]} {RNA1509_30378} {RNA1310_18735} {RNA815_31307}

Mlig455_067934 {REF} {Length: 2625} {Human: ENSG00000058091, CDK14, cyclin dependent kinase 14, [Score=110, Expect=1e-25]; ENSG00000138395, CDK15, cyclin dependent kinase 15, [Score=105, Expect=3e-24]} {Mouse: ENSMUSG00000028926, Cdk14, cyclin-dependent kinase 14, [Score=110, Expect=1e-25]} {Dmel: FBgn0005640, Eip63E, Ecdysone-induced protein 63E, [Score=100, Expect=3e-22]} {Celegans: WBGene00003961, pct-1, Cyclin-dependent kinase 17, [Score=94.0, Expect=4e-20]} {Smed: dd_Smed_v6_11023_0_1, dd_Smed_v6_11023_0_1, [Score=106, Expect=3e-24]} {RNA1310_55254.2} {RNA815_31307}

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