M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_53236

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_53236 261 5.44 Mlig455_041819

Neo: -

Age: -

 Mlig455_041819 {REF} {Length: 2489} {TRANSSPLICED} {Pfam: Cation efflux family [PF01545.23, score=89.0]; Dimerisation domain of Zinc Transporter [PF16916.7, score=40.6]} {Celegans: WBGene00019841, R02F11.3, [RH, Score=243, Expect=1e-74]} {Smed: dd_Smed_v6_12060_0_1, dd_Smed_v6_12060_0_1, [RH, Score=280, Expect=6e-90]} {RNA1509_14016, RNA1509_54106, RNA1509_55936} {RNA1310_8907, RNA1509_54106, RNA1509_55936} {RNA1509_54106, RNA1509_55936, RNA815_2986}

Cumulative graph for MligTC455_53236

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.13 2.946 0.92117 1.00000
RegionR2 -0.634 2.946 0.35983 0.75469
RegionR3 0.627 2.946 0.19386 0.73142
RegionR4 0.181 2.946 0.73184 1.00000
RegionR5 0.912 2.946 0.03021 0.13012
RegionR6 0.375 2.946 0.46535 1.00000
RegionR7 -1.572 2.946 0.08358 0.55668
RegionR8 -0.019 2.946 0.98634 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.196 2.946 0.18784 0.92780
RegenerationR2 0.019 2.946 0.97821 1.00000
RegenerationR3 -0.317 2.946 0.54969 0.88346
RegenerationR4 0.071 2.946 0.89262 1.00000
RegenerationR5 -0.547 2.946 0.23454 0.66843
RegenerationR6 -0.287 2.946 0.61401 0.87643
RegenerationBL -1.263 2.946 0.23061 0.58170
RegenerationTP -0.283 2.946 0.78439 1.00000


Genes with expression patterns similar to MligTC455_53236

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_53236 261 5.44 Mlig455_041819

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_041819 {REF} {Length: 2489} {TRANSSPLICED} {Pfam: Cation efflux family [PF01545.23, score=89.0]; Dimerisation domain of Zinc Transporter [PF16916.7, score=40.6]} {Celegans: WBGene00019841, R02F11.3, [RH, Score=243, Expect=1e-74]} {Smed: dd_Smed_v6_12060_0_1, dd_Smed_v6_12060_0_1, [RH, Score=280, Expect=6e-90]} {RNA1509_14016, RNA1509_54106, RNA1509_55936} {RNA1310_8907, RNA1509_54106, RNA1509_55936} {RNA1509_54106, RNA1509_55936, RNA815_2986}
2. MligTC455_41384 839 17.49 Mlig455_025978

Neo: -

Age: -

 CPOX 0.965 - - - - - 0.965 Mlig455_025978 {REF} {Length: 2229} {TRANSSPLICED} {Pfam: Coproporphyrinogen III oxidase [PF01218.20, score=439.7]} {Human: ENSG00000080819, CPOX, coproporphyrinogen oxidase, [RH, Score=413, Expect=5e-142]} {Mouse: ENSMUSG00000022742, Cpox, coproporphyrinogen oxidase, [RH, Score=407, Expect=7e-140]} {Dmel: FBgn0021944, Coprox, Coproporphyrinogen oxidase, [RH, Score=412, Expect=5e-143]} {Smed: dd_Smed_v6_2002_0_1, dd_Smed_v6_2002_0_1, [RH, Score=407, Expect=5e-142]} {RNA1509_12544, RNA1509_36539} {RNA1310_13914, RNA1509_12544, RNA1509_36539} {RNA1509_12544, RNA1509_36539, RNA815_9874.1}
3. MligTC455_39984 512 10.67 Mlig455_039849

Neo: -

Age: -

 0.961 - - - - - 0.961 Mlig455_039849 {REF} {Length: 887} {RNA1509_47643} {RNA1310_53943, RNA1509_47643} {RNA1509_47643, RNA815_31128}
4. MligTC455_19161 783 16.32 Mlig455_008517

Neo: -

Age: Down-Down-Up

Region-enriched R5: 1.247/0.00353

 0.959 - - - - - 0.959 Mlig455_008517 {REF} {Length: 1080} {TRANSSPLICED} {Dmel: FBgn0030786, mRpL22, mitochondrial ribosomal protein L22, [RH, Score=59.3, Expect=4e-10]} {Smed: dd_Smed_v6_2175_0_1, dd_Smed_v6_2175_0_1, [RH, Score=78.2, Expect=5e-17]} {RNA1509_27643} {RNA1310_27864.1} {RNA815_12212.1}
5. MligTC455_14948 775 16.14 Mlig455_070128

Neo: -

Age: -

Region-enriched R5: 1.290/0.00023

 0.958 - - - - - 0.958 Mlig455_070128 {REF} {Length: 1941} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=49.6]} {Smed: dd_Smed_v6_6819_0_1, dd_Smed_v6_6819_0_1, [Score=146, Expect=1e-40]} {RNA1509_19514} {RNA1310_15638} {RNA815_3347.1}
6. MligTC455_19113 2602 54.21 Mlig455_002455, Mlig455_002472, Mlig455_002719

Neo: -

Age: logFC(26M/2M)=0.461

 TMC7 0.956 - - - - - 0.956

Mlig455_002455 {REF} {Length: 3546} {TRANSSPLICED} {Pfam: TMC domain [PF07810.15, score=90.1]} {Human: ENSG00000170537, TMC7, transmembrane channel like 7, [Score=195, Expect=5e-52]} {Mouse: ENSMUSG00000042246, Tmc7, transmembrane channel-like gene family 7, [Score=197, Expect=4e-53]} {Dmel: FBgn0267796, Tmc, Transmembrane channel-like, [Score=64.3, Expect=4e-10]} {Celegans: WBGene00020490, tmc-1, Transmembrane channel-like protein 1, [RH, Score=65.1, Expect=2e-10]} {Smed: dd_Smed_v6_6619_0_1, dd_Smed_v6_6619_0_1, [Score=74.3, Expect=2e-14]} {RNA1509_5830} {RNA1310_394.2} {RNA815_2735}

Mlig455_002472 {REF} {Length: 3544} {TRANSSPLICED} {Pfam: TMC domain [PF07810.15, score=91.1]} {Human: ENSG00000170537, TMC7, transmembrane channel like 7, [Score=197, Expect=6e-53]} {Mouse: ENSMUSG00000042246, Tmc7, transmembrane channel-like gene family 7, [Score=199, Expect=2e-53]} {Dmel: FBgn0267796, Tmc, Transmembrane channel-like, [Score=64.7, Expect=4e-10]} {Celegans: WBGene00020490, tmc-1, Transmembrane channel-like protein 1, [RH, Score=67.8, Expect=2e-11]} {Smed: dd_Smed_v6_6619_0_1, dd_Smed_v6_6619_0_1, [Score=73.9, Expect=3e-14]} {RNA1509_34750, RNA1509_5830} {RNA1310_394.2, RNA1509_34750, RNA1509_5830} {RNA1509_34750, RNA1509_5830, RNA815_2735}

Mlig455_002719 {REF} {Length: 2986} {TRANSSPLICED} {Pfam: TMC domain [PF07810.15, score=91.1]} {Human: ENSG00000170537, TMC7, transmembrane channel like 7, [Score=197, Expect=6e-53]} {Mouse: ENSMUSG00000042246, Tmc7, transmembrane channel-like gene family 7, [Score=199, Expect=2e-53]} {Dmel: FBgn0267796, Tmc, Transmembrane channel-like, [Score=64.7, Expect=4e-10]} {Celegans: WBGene00020490, tmc-1, Transmembrane channel-like protein 1, [RH, Score=67.8, Expect=2e-11]} {Smed: dd_Smed_v6_6619_0_1, dd_Smed_v6_6619_0_1, [Score=73.9, Expect=3e-14]} {RNA1509_38561, RNA1509_5830} {RNA1310_394.4, RNA1509_38561} {RNA1509_38561, RNA815_2735}
7. MligTC455_28063 833 17.35 Mlig455_056559

Neo: -

Age: -

 TFB1M 0.954 - - - - - 0.954 Mlig455_056559 {REF} {Length: 1318} {TRANSSPLICED} {Pfam: Ribosomal RNA adenine dimethylase [PF00398.22, score=119.9]; Methyltransferase domain [PF13649.8, score=22.8]; Protein of unknown function (DUF1698) [PF08003.13, score=19.7]; Methyltransferase domain [PF13489.8, score=18.8]} {Human: ENSG00000029639, TFB1M, transcription factor B1, mitochondrial, [RH, Score=237, Expect=3e-75]} {Mouse: ENSMUSG00000036983, Tfb1m, transcription factor B1, mitochondrial, [RH, Score=230, Expect=1e-72]} {Dmel: FBgn0261381, mtTFB1, Mitochondrial Transcription Factor B1, [RH, Score=200, Expect=2e-61]} {Celegans: WBGene00020189, tfbm-1, Dimethyladenosine transferase 1, mitochondrial, [RH, Score=243, Expect=1e-77]} {Smed: dd_Smed_v6_8684_0_1, dd_Smed_v6_8684_0_1, [RH, Score=283, Expect=4e-93]} {RNA1509_31959, RNA1509_57587} {RNA1310_25999, RNA1509_57587} {RNA1509_57587, RNA815_11217}
8. MligTC455_50197 221 4.59 Mlig455_070887

Neo: Int S/G2/M

Age: -

 0.952 - - - - 0.952 - Mlig455_070887 {REF} {Length: 2201} {RNA1509_44733} {RNA1310_2296} {RNA815_10696}
9. MligTC455_49169 409 8.52 Mlig455_014589

Neo: Irradiation

Age: Up-Down-Down

Region-specific R4: 2.141

 SLC30A5 0.95 - - - - - 0.950 Mlig455_014589 {REF} {Length: 3364} {TRANSSPLICED} {Pfam: Cation efflux family [PF01545.23, score=140.9]} {Human: ENSG00000145740, SLC30A5, solute carrier family 30 member 5, [Score=456, Expect=3e-150]} {Mouse: ENSMUSG00000021629, Slc30a5, solute carrier family 30 (zinc transporter), member 5, [Score=446, Expect=1e-146]} {Dmel: FBgn0037875, ZnT86D, Zinc transporter 86D, [Score=136, Expect=8e-35]} {Celegans: WBGene00013668, Y105E8A.3, [Score=327, Expect=2e-101]} {Smed: dd_Smed_v6_4378_0_1, dd_Smed_v6_4378_0_1, [Score=401, Expect=1e-129]} {RNA1509_47381} {RNA1310_7900} {RNA815_16274}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA