M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_53423

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_53423 1277 26.61 Mlig455_016245

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.359

Region-enriched R4: 2.028/0.03482

 Mlig455_016245 {REF} {Length: 1291} {RNA1509_20275} {RNA1310_27132, RNA1509_20275} {RNA1509_20275, RNA815_13259}

Cumulative graph for MligTC455_53423

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.712 4.935 0.58053 1.00000
RegionR2 -2.236 4.935 0.00631 0.07487
RegionR3 1.153 4.935 0.04683 0.37900
RegionR4 2.028 4.935 0.00474 0.03482
RegionR5 1.109 4.935 0.05664 0.20483
RegionR6 1.15 4.935 0.05314 0.43158
RegionR7 -2.65 4.935 0.00541 0.11605
RegionR8 0.158 4.935 0.84832 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.282 4.935 0.85571 1.00000
RegenerationR2 0.064 4.935 0.93336 1.00000
RegenerationR3 -0.224 4.935 0.76066 0.96788
RegenerationR4 -0.106 4.935 0.88887 1.00000
RegenerationR5 0.186 4.935 0.80629 0.99025
RegenerationR6 0.216 4.935 0.77143 0.96297
RegenerationBL 0.362 4.935 0.62210 0.96458
RegenerationTP 1.269 4.935 0.13393 0.54983


Genes with expression patterns similar to MligTC455_53423

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_53423 1277 26.61 Mlig455_016245

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.359

Region-enriched R4: 2.028/0.03482

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_016245 {REF} {Length: 1291} {RNA1509_20275} {RNA1310_27132, RNA1509_20275} {RNA1509_20275, RNA815_13259}
2. MligTC455_51880 13248 275.99 Mlig455_059444

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-3.002

Region-enriched R3: 1.727/0.04203

 2.521 0.772 - 0.777 0.972 - - Mlig455_059444 {REF} {Length: 1115} {RNA1509_16825, RNA1509_20241, RNA1509_31277, RNA1509_40483, RNA1509_410, RNA1509_7504} {RNA1310_33614.1, RNA1509_16825, RNA1509_20241, RNA1509_31277, RNA1509_40483, RNA1509_410, RNA1509_7504} {RNA1509_16825, RNA1509_20241, RNA1509_31277, RNA1509_40483, RNA1509_410, RNA1509_7504, RNA815_18624}
3. MligTC455_29708 75761 1578.36 Mlig455_040690, Mlig455_064560

Neo: -

Age: -

Region-enriched R3: 1.504/0.04283

 ACTG1 1.799 - - 0.827 0.972 - -

Mlig455_040690 {REF} {Length: 1968} {Pfam: Actin [PF00022.21, score=495.2]} {Human: ENSG00000184009, ACTG1, actin gamma 1, [RH, Score=754, Expect=0.0]; ENSG00000075624, ACTB, actin beta, [RH, Score=753, Expect=0.0]; ENSG00000163017, ACTG2, actin, gamma 2, smooth muscle, enteric, [RH, Score=734, Expect=0.0]; ENSG00000143632, ACTA1, actin, alpha 1, skeletal muscle, [RH, Score=733, Expect=0.0]; ENSG00000107796, ACTA2, actin, alpha 2, smooth muscle, aorta, [RH, Score=733, Expect=0.0]; ENSG00000159251, ACTC1, actin, alpha, cardiac muscle 1, [RH, Score=731, Expect=0.0]; ENSG00000169067, ACTBL2, actin, beta like 2, [RH, Score=717, Expect=0.0]} {Mouse: ENSMUSG00000062825, Actg1, actin, gamma, cytoplasmic 1, [RH, Score=754, Expect=0.0]; ENSMUSG00000029580, Actb, actin, beta, [RH, Score=753, Expect=0.0]; ENSMUSG00000059430, Actg2, actin, gamma 2, smooth muscle, enteric, [RH, Score=734, Expect=0.0]; ENSMUSG00000035783, Acta2, actin, alpha 2, smooth muscle, aorta, [RH, Score=733, Expect=0.0]; ENSMUSG00000031972, Acta1, actin, alpha 1, skeletal muscle, [RH, Score=733, Expect=0.0]; ENSMUSG00000068614, Actc1, actin, alpha, cardiac muscle 1, [RH, Score=731, Expect=0.0]; ENSMUSG00000055194, Actbl2, actin, beta-like 2, [RH, Score=726, Expect=0.0]} {Dmel: FBgn0000042, Act5C, Actin 5C, [RH, Score=756, Expect=0.0]} {Celegans: WBGene00000066, act-4, Actin-4, [RH, Score=757, Expect=0.0]} {Smed: dd_Smed_v6_3_0_1, dd_Smed_v6_3_0_1, [RH, Score=753, Expect=0.0]} {RNA1509_424, RNA1509_47715} {RNA1310_16469.2, RNA1509_47715} {RNA1509_47715, RNA815_4929.3}

Mlig455_064560 {REF} {Length: 1687} {Pfam: Actin [PF00022.21, score=495.2]} {Human: ENSG00000184009, ACTG1, actin gamma 1, [RH, Score=754, Expect=0.0]; ENSG00000075624, ACTB, actin beta, [RH, Score=753, Expect=0.0]; ENSG00000163017, ACTG2, actin, gamma 2, smooth muscle, enteric, [RH, Score=734, Expect=0.0]; ENSG00000143632, ACTA1, actin, alpha 1, skeletal muscle, [RH, Score=733, Expect=0.0]; ENSG00000107796, ACTA2, actin, alpha 2, smooth muscle, aorta, [RH, Score=733, Expect=0.0]; ENSG00000159251, ACTC1, actin, alpha, cardiac muscle 1, [RH, Score=731, Expect=0.0]; ENSG00000169067, ACTBL2, actin, beta like 2, [RH, Score=717, Expect=0.0]} {Mouse: ENSMUSG00000062825, Actg1, actin, gamma, cytoplasmic 1, [RH, Score=754, Expect=0.0]; ENSMUSG00000029580, Actb, actin, beta, [RH, Score=753, Expect=0.0]; ENSMUSG00000059430, Actg2, actin, gamma 2, smooth muscle, enteric, [RH, Score=734, Expect=0.0]; ENSMUSG00000035783, Acta2, actin, alpha 2, smooth muscle, aorta, [RH, Score=733, Expect=0.0]; ENSMUSG00000031972, Acta1, actin, alpha 1, skeletal muscle, [RH, Score=733, Expect=0.0]; ENSMUSG00000068614, Actc1, actin, alpha, cardiac muscle 1, [RH, Score=731, Expect=0.0]; ENSMUSG00000055194, Actbl2, actin, beta-like 2, [RH, Score=726, Expect=0.0]} {Dmel: FBgn0000042, Act5C, Actin 5C, [RH, Score=756, Expect=0.0]} {Celegans: WBGene00000066, act-4, Actin-4, [RH, Score=757, Expect=0.0]} {Smed: dd_Smed_v6_3_0_1, dd_Smed_v6_3_0_1, [RH, Score=753, Expect=0.0]} {RNA1509_23256, RNA1509_25656, RNA1509_32867, RNA1509_424, RNA1509_479, RNA1509_54537} {RNA1310_16469.2, RNA1509_23256, RNA1509_25656, RNA1509_32867, RNA1509_479, RNA1509_54537} {RNA1509_23256, RNA1509_25656, RNA1509_32867, RNA1509_479, RNA1509_54537, RNA815_4929.3}
4. MligTC455_39550 1363 28.4 Mlig455_064780

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.374

Region-enriched R5: 1.797/0.04927

 1.735 - - 0.769 0.966 - - Mlig455_064780 {REF} {Length: 2221} {Pfam: Universal stress protein family [PF00582.28, score=100.0]} {Smed: dd_Smed_v6_402_1_1, dd_Smed_v6_402_1_1, [Score=106, Expect=7e-30]} {RNA1509_6489} {RNA1310_12949} {RNA815_11224}
5. MligTC455_20353 17917 373.27 Mlig455_013260, Mlig455_013275, Mlig455_013349

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.424

Region-enriched R3: 2.278/0.00008
Region-enriched R4: 1.727/0.01391

 0.987 - - - 0.987 - -

Mlig455_013260 {REF} {Length: 1502} {RNA1509_60036, RNA1509_670} {RNA1310_18395, RNA1509_60036} {RNA1509_60036, RNA815_8767}

Mlig455_013275 {REF} {Length: 1323} {RNA1509_670} {RNA1310_18395} {RNA815_8767}

Mlig455_013349 {REF} {Length: 1540} {RNA1509_51207, RNA1509_57783, RNA1509_670} {RNA1310_18395, RNA1509_51207, RNA1509_57783, RNA1509_670} {RNA1509_51207, RNA1509_57783, RNA1509_670, RNA815_8767}
6. MligTC455_24432 20642 430.04 Mlig455_003077

Neo: Neoblast

Age: Down-Down-Up, logFC(26M/2M)=-0.217

 RPLP2 0.963 - - - - 0.963 - Mlig455_003077 {REF} {Length: 523} {TRANSSPLICED} {Pfam: 60s Acidic ribosomal protein [PF00428.21, score=92.4]} {Human: ENSG00000177600, RPLP2, ribosomal protein lateral stalk subunit P2, [Score=72.8, Expect=2e-17]} {Mouse: ENSMUSG00000025508, Rplp2, ribosomal protein, large P2, [Score=72.8, Expect=1e-17]} {Dmel: FBgn0003274, RpLP2, Ribosomal protein LP2, [Score=63.5, Expect=4e-14]} {Celegans: WBGene00004410, rla-2, Ribosomal protein, Large subunit, Acidic (P1), [Score=70.1, Expect=9e-17]} {Smed: dd_Smed_v6_556_0_1, dd_Smed_v6_556_0_1, [Score=73.2, Expect=3e-18]} {RNA1509_7060} {RNA1310_35248.1, RNA1509_7060} {RNA1509_7060, RNA815_25435}
7. MligTC455_15733 28121 585.86 Mlig455_067264

Neo: -

Age: logFC(26M/2M)=-0.415

 0.951 - - - 0.951 - - Mlig455_067264 {REF} {Length: 1482} {Pfam: Protein of unknown function (DUF3421) [PF11901.10, score=119.0]} {Dmel: FBgn0034583, CG10527, [Score=73.9, Expect=5e-16]} {Smed: dd_Smed_v6_766_0_1, dd_Smed_v6_766_0_1, [RH, Score=136, Expect=1e-41]} {RNA1509_18673, RNA1509_9503} {RNA1310_39489, RNA1509_9503} {RNA1509_9503, RNA815_16771}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA