M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_53431

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_53431 1383 28.81 Mlig455_043693, Mlig455_043762

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.390

Region-enriched R5: 2.144/0.00065

 LMO4

Mlig455_043693 {REF} {Length: 2138} {Pfam: LIM domain [PF00412.24, score=94.1]} {Human: ENSG00000143013, LMO4, LIM domain only 4, [RH, Score=143, Expect=2e-42]} {Mouse: ENSMUSG00000028266, Lmo4, LIM domain only 4, [RH, Score=143, Expect=1e-42]} {Dmel: FBgn0032196, CG5708, [RH, Score=124, Expect=2e-34]} {Celegans: WBGene00006654, ttx-3, LIM/homeobox protein ttx-3, [Score=72.0, Expect=2e-14]} {Smed: dd_Smed_v6_27625_0_1, dd_Smed_v6_27625_0_1, [RH, Score=105, Expect=2e-27]} {RNA1509_7368} {RNA1310_20349.1, RNA1509_7368} {RNA1509_7368, RNA815_13759}

Mlig455_043762 {REF} {Length: 2141} {Pfam: LIM domain [PF00412.24, score=94.1]} {Human: ENSG00000143013, LMO4, LIM domain only 4, [RH, Score=143, Expect=2e-42]} {Mouse: ENSMUSG00000028266, Lmo4, LIM domain only 4, [RH, Score=143, Expect=1e-42]} {Dmel: FBgn0032196, CG5708, [RH, Score=124, Expect=2e-34]} {Celegans: WBGene00006654, ttx-3, LIM/homeobox protein ttx-3, [Score=71.6, Expect=2e-14]} {Smed: dd_Smed_v6_27625_0_1, dd_Smed_v6_27625_0_1, [RH, Score=105, Expect=3e-27]} {RNA1509_7368} {RNA1310_20349.1} {RNA815_13759}

Cumulative graph for MligTC455_53431

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -7.618 5.086 0.01081 0.30373
RegionR2 0.384 5.086 0.65263 0.98715
RegionR3 0.01 5.086 0.84260 1.00000
RegionR4 0.917 5.086 0.28093 0.58870
RegionR5 2.144 5.086 0.00003 0.00065
RegionR6 1.055 5.086 0.13910 0.67044
RegionR7 1.2 5.086 0.10999 0.62897
RegionR8 1.908 5.086 0.00872 0.17409

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 7.335 5.086 0.03315 0.63968
RegenerationR2 -0.218 5.086 0.60892 0.91914
RegenerationR3 0.338 5.086 0.46691 0.84190
RegenerationR4 0.225 5.086 0.62576 0.92209
RegenerationR5 -0.275 5.086 0.51056 0.86407
RegenerationR6 -1.186 5.086 0.01356 0.14356
RegenerationBL -0.312 5.086 0.49338 0.85832
RegenerationTP -0.938 5.086 0.06107 0.40017


Genes with expression patterns similar to MligTC455_53431

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_53431 1383 28.81 Mlig455_043693, Mlig455_043762

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.390

Region-enriched R5: 2.144/0.00065

 LMO4 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_043693 {REF} {Length: 2138} {Pfam: LIM domain [PF00412.24, score=94.1]} {Human: ENSG00000143013, LMO4, LIM domain only 4, [RH, Score=143, Expect=2e-42]} {Mouse: ENSMUSG00000028266, Lmo4, LIM domain only 4, [RH, Score=143, Expect=1e-42]} {Dmel: FBgn0032196, CG5708, [RH, Score=124, Expect=2e-34]} {Celegans: WBGene00006654, ttx-3, LIM/homeobox protein ttx-3, [Score=72.0, Expect=2e-14]} {Smed: dd_Smed_v6_27625_0_1, dd_Smed_v6_27625_0_1, [RH, Score=105, Expect=2e-27]} {RNA1509_7368} {RNA1310_20349.1, RNA1509_7368} {RNA1509_7368, RNA815_13759}

Mlig455_043762 {REF} {Length: 2141} {Pfam: LIM domain [PF00412.24, score=94.1]} {Human: ENSG00000143013, LMO4, LIM domain only 4, [RH, Score=143, Expect=2e-42]} {Mouse: ENSMUSG00000028266, Lmo4, LIM domain only 4, [RH, Score=143, Expect=1e-42]} {Dmel: FBgn0032196, CG5708, [RH, Score=124, Expect=2e-34]} {Celegans: WBGene00006654, ttx-3, LIM/homeobox protein ttx-3, [Score=71.6, Expect=2e-14]} {Smed: dd_Smed_v6_27625_0_1, dd_Smed_v6_27625_0_1, [RH, Score=105, Expect=3e-27]} {RNA1509_7368} {RNA1310_20349.1} {RNA815_13759}
2. MligTC455_52060 860 17.92 Mlig455_020170

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.363

 2.518 - - 0.802 0.744 - 0.972 Mlig455_020170 {REF} {Length: 1703} {TRANSSPLICED} {Pfam: Mid-1-related chloride channel (MCLC) [PF05934.13, score=24.2]} {RNA1509_45538} {RNA1310_18152, RNA1509_45538} {RNA1509_45538, RNA815_7271}
3. MligTC455_43563 1015 21.15 Mlig455_009843

Neo: Irradiation

Age: Down-Up-Up, logFC(26M/2M)=0.329

Region-specific R5: 2.152

Region-enriched R5: 2.058/0.00000

 PLD6 2.443 - - 0.759 - 0.724 0.960 Mlig455_009843 {REF} {Length: 936} {TRANSSPLICED} {Pfam: PLD-like domain [PF13091.8, score=97.1]} {Human: ENSG00000179598, PLD6, phospholipase D family member 6, [RH, Score=112, Expect=1e-29]} {Mouse: ENSMUSG00000043648, Pld6, phospholipase D family, member 6, [RH, Score=115, Expect=3e-31]} {Dmel: FBgn0261266, zuc, zucchini, [RH, Score=111, Expect=2e-29]} {Smed: dd_Smed_v6_11719_0_2, dd_Smed_v6_11719_0_2, [RH, Score=98.2, Expect=9e-25]} {RNA1509_19315, RNA1509_26144} {RNA1310_37212, RNA1509_19315, RNA1509_26144} {RNA1509_19315, RNA1509_26144, RNA815_17664}
4. MligTC455_36203 1123 23.39 Mlig455_011960

Neo: -

Age: -

 GRIA2 0.95 - - - 0.950 - - Mlig455_011960 {REF} {Length: 3110} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=79.2]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=65.3]; Ligand-gated ion channel [PF00060.28, score=52.4]} {Human: ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=143, Expect=1e-35]; ENSG00000155511, GRIA1, glutamate ionotropic receptor AMPA type subunit 1, [Score=141, Expect=7e-35]} {Mouse: ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=143, Expect=1e-35]; ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=141, Expect=7e-35]} {Dmel: FBgn0046113, GluRIIC, Glutamate receptor IIC, [Score=119, Expect=9e-28]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=123, Expect=2e-29]} {Smed: dd_Smed_v6_4267_0_1, dd_Smed_v6_4267_0_1, [Score=131, Expect=4e-32]} {RNA1509_11228, RNA1509_36268} {RNA1310_9671.1, RNA1509_36268} {RNA1509_36268, RNA815_3917}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA