TomoSeq data search

Data search

Results for MligTC455_53521

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_53521	1973	41.10	Mlig455_058693	Neo: - Age: -	CHD4	Mlig455_058693 {REF} {Length: 6234} {TRANSSPLICED} {Pfam: CHDCT2 (NUC038) domain [PF08074.13, score=234.7]; SNF2-related domain [PF00176.25, score=208.9]; Domain of Unknown Function (DUF1086) [PF06461.13, score=157.7]; Helicase conserved C-terminal domain [PF00271.33, score=76.5]; Domain of Unknown Function (DUF1087) [PF06465.15, score=68.2]; PHD-finger [PF00628.31, score=66.0]; Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=56.4]; CHDNT (NUC034) domain [PF08073.14, score=39.0]; Type III restriction enzyme, res subunit [PF04851.17, score=30.7]; Class II histone deacetylase complex subunits 2 and 3 [PF11496.10, score=29.7]; PHD-finger [PF13831.8, score=28.9]; PHD-like zinc-binding domain [PF13771.8, score=23.8]} {Human: ENSG00000111642, CHD4, chromodomain helicase DNA binding protein 4, [RH, Score=1726, Expect=0.0]; ENSG00000170004, CHD3, chromodomain helicase DNA binding protein 3, [RH, Score=1723, Expect=0.0]} {Mouse: ENSMUSG00000005045, Chd5, chromodomain helicase DNA binding protein 5, [RH, Score=1756, Expect=0.0]; ENSMUSG00000018474, Chd3, chromodomain helicase DNA binding protein 3, [RH, Score=1720, Expect=0.0]} {Dmel: FBgn0262519, Mi-2, [Score=1444, Expect=0.0]} {Celegans: WBGene00000482, chd-3, Chromodomain-helicase-DNA-binding protein 3 homolog, [RH, Score=1534, Expect=0.0]} {Smed: dd_Smed_v6_2331_0_1, dd_Smed_v6_2331_0_1, [RH, Score=1702, Expect=0.0]} {RNA1509_2055} {RNA1310_619, RNA1509_2055} {RNA1509_2055, RNA815_1273.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_53521

1973

41.10

Mlig455_058693

Neo: -

Age: -

CHD4

Mlig455_058693 {REF} {Length: 6234} {TRANSSPLICED} {Pfam: CHDCT2 (NUC038) domain [PF08074.13, score=234.7]; SNF2-related domain [PF00176.25, score=208.9]; Domain of Unknown Function (DUF1086) [PF06461.13, score=157.7]; Helicase conserved C-terminal domain [PF00271.33, score=76.5]; Domain of Unknown Function (DUF1087) [PF06465.15, score=68.2]; PHD-finger [PF00628.31, score=66.0]; Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=56.4]; CHDNT (NUC034) domain [PF08073.14, score=39.0]; Type III restriction enzyme, res subunit [PF04851.17, score=30.7]; Class II histone deacetylase complex subunits 2 and 3 [PF11496.10, score=29.7]; PHD-finger [PF13831.8, score=28.9]; PHD-like zinc-binding domain [PF13771.8, score=23.8]} {Human: ENSG00000111642, CHD4, chromodomain helicase DNA binding protein 4, [RH, Score=1726, Expect=0.0]; ENSG00000170004, CHD3, chromodomain helicase DNA binding protein 3, [RH, Score=1723, Expect=0.0]} {Mouse: ENSMUSG00000005045, Chd5, chromodomain helicase DNA binding protein 5, [RH, Score=1756, Expect=0.0]; ENSMUSG00000018474, Chd3, chromodomain helicase DNA binding protein 3, [RH, Score=1720, Expect=0.0]} {Dmel: FBgn0262519, Mi-2, [Score=1444, Expect=0.0]} {Celegans: WBGene00000482, chd-3, Chromodomain-helicase-DNA-binding protein 3 homolog, [RH, Score=1534, Expect=0.0]} {Smed: dd_Smed_v6_2331_0_1, dd_Smed_v6_2331_0_1, [RH, Score=1702, Expect=0.0]} {RNA1509_2055} {RNA1310_619, RNA1509_2055} {RNA1509_2055, RNA815_1273.1}

Cumulative graph for MligTC455_53521

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	0.892	5.493	0.12639	0.72181
RegionR2	0.042	5.493	0.90264	1.00000
RegionR3	-0.806	5.493	0.00861	0.13849
RegionR4	-0.24	5.493	0.44171	0.77027
RegionR5	0.49	5.493	0.05344	0.19672
RegionR6	-0.016	5.493	0.95625	1.00000
RegionR7	-0.302	5.493	0.42657	1.00000
RegionR8	-0.06	5.493	0.89975	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-1.642	5.493	0.05248	0.70520
RegenerationR2	0.454	5.493	0.14882	0.58188
RegenerationR3	0.539	5.493	0.12407	0.54449
RegenerationR4	-0.084	5.493	0.79879	0.98582
RegenerationR5	-0.206	5.493	0.50684	0.86206
RegenerationR6	0.591	5.493	0.07796	0.34878
RegenerationBL	1.209	5.493	0.00047	0.01346
RegenerationTP	-0.102	5.493	0.81327	1.00000

Genes with expression patterns similar to MligTC455_53521

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_53521	1973	41.1	Mlig455_058693	Neo: - Age: -	CHD4	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_058693 {REF} {Length: 6234} {TRANSSPLICED} {Pfam: CHDCT2 (NUC038) domain [PF08074.13, score=234.7]; SNF2-related domain [PF00176.25, score=208.9]; Domain of Unknown Function (DUF1086) [PF06461.13, score=157.7]; Helicase conserved C-terminal domain [PF00271.33, score=76.5]; Domain of Unknown Function (DUF1087) [PF06465.15, score=68.2]; PHD-finger [PF00628.31, score=66.0]; Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=56.4]; CHDNT (NUC034) domain [PF08073.14, score=39.0]; Type III restriction enzyme, res subunit [PF04851.17, score=30.7]; Class II histone deacetylase complex subunits 2 and 3 [PF11496.10, score=29.7]; PHD-finger [PF13831.8, score=28.9]; PHD-like zinc-binding domain [PF13771.8, score=23.8]} {Human: ENSG00000111642, CHD4, chromodomain helicase DNA binding protein 4, [RH, Score=1726, Expect=0.0]; ENSG00000170004, CHD3, chromodomain helicase DNA binding protein 3, [RH, Score=1723, Expect=0.0]} {Mouse: ENSMUSG00000005045, Chd5, chromodomain helicase DNA binding protein 5, [RH, Score=1756, Expect=0.0]; ENSMUSG00000018474, Chd3, chromodomain helicase DNA binding protein 3, [RH, Score=1720, Expect=0.0]} {Dmel: FBgn0262519, Mi-2, [Score=1444, Expect=0.0]} {Celegans: WBGene00000482, chd-3, Chromodomain-helicase-DNA-binding protein 3 homolog, [RH, Score=1534, Expect=0.0]} {Smed: dd_Smed_v6_2331_0_1, dd_Smed_v6_2331_0_1, [RH, Score=1702, Expect=0.0]} {RNA1509_2055} {RNA1310_619, RNA1509_2055} {RNA1509_2055, RNA815_1273.1}
2.	MligTC455_53097	510	10.63	Mlig455_002984, Mlig455_055616	Neo: - Age: Down-Up-Down Region-enriched R2: 2.486/0.00600	CHIC2	0.955	-	-	-	0.955	-	-	Mlig455_002984 {REF} {Length: 2704} {Pfam: Golgin subfamily A member 7/ERF4 family [PF10256.11, score=44.8]} {Human: ENSG00000109220, CHIC2, cysteine rich hydrophobic domain 2, [RH, Score=162, Expect=4e-51]; ENSG00000204116, CHIC1, cysteine rich hydrophobic domain 1, [RH, Score=161, Expect=5e-50]} {Mouse: ENSMUSG00000029229, Chic2, cysteine-rich hydrophobic domain 2, [RH, Score=163, Expect=1e-51]; ENSMUSG00000031327, Chic1, cysteine-rich hydrophobic domain 1, [RH, Score=160, Expect=6e-50]} {Dmel: FBgn0046247, CG5938, [RH, Score=161, Expect=4e-51]} {Celegans: WBGene00044319, tag-266, Cysteine-rich hydrophobic protein, [Score=163, Expect=9e-52]} {Smed: dd_Smed_v6_4955_0_1, dd_Smed_v6_4955_0_1, [RH, Score=132, Expect=7e-40]} {RNA1509_11522} {RNA1310_1228.2, RNA1509_11522} {RNA1509_11522, RNA815_2491} Mlig455_055616 {REF} {Length: 2066} {Pfam: Golgin subfamily A member 7/ERF4 family [PF10256.11, score=44.8]} {Human: ENSG00000109220, CHIC2, cysteine rich hydrophobic domain 2, [RH, Score=162, Expect=4e-51]; ENSG00000204116, CHIC1, cysteine rich hydrophobic domain 1, [RH, Score=161, Expect=5e-50]} {Mouse: ENSMUSG00000029229, Chic2, cysteine-rich hydrophobic domain 2, [RH, Score=163, Expect=1e-51]; ENSMUSG00000031327, Chic1, cysteine-rich hydrophobic domain 1, [RH, Score=160, Expect=6e-50]} {Dmel: FBgn0046247, CG5938, [RH, Score=161, Expect=4e-51]} {Celegans: WBGene00044319, tag-266, Cysteine-rich hydrophobic protein, [Score=163, Expect=9e-52]} {Smed: dd_Smed_v6_4955_0_1, dd_Smed_v6_4955_0_1, [RH, Score=132, Expect=7e-40]} {RNA1509_11522} {RNA1310_1228.2} {RNA815_2491}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_53521

1973

41.1

Mlig455_058693

Neo: -

Age: -

CHD4

1.000

MligTC455_53097

510

10.63

Mlig455_002984, Mlig455_055616

Neo: -

Age: Down-Up-Down

Region-enriched R2: 2.486/0.00600

CHIC2

0.955

Mlig455_002984 {REF} {Length: 2704} {Pfam: Golgin subfamily A member 7/ERF4 family [PF10256.11, score=44.8]} {Human: ENSG00000109220, CHIC2, cysteine rich hydrophobic domain 2, [RH, Score=162, Expect=4e-51]; ENSG00000204116, CHIC1, cysteine rich hydrophobic domain 1, [RH, Score=161, Expect=5e-50]} {Mouse: ENSMUSG00000029229, Chic2, cysteine-rich hydrophobic domain 2, [RH, Score=163, Expect=1e-51]; ENSMUSG00000031327, Chic1, cysteine-rich hydrophobic domain 1, [RH, Score=160, Expect=6e-50]} {Dmel: FBgn0046247, CG5938, [RH, Score=161, Expect=4e-51]} {Celegans: WBGene00044319, tag-266, Cysteine-rich hydrophobic protein, [Score=163, Expect=9e-52]} {Smed: dd_Smed_v6_4955_0_1, dd_Smed_v6_4955_0_1, [RH, Score=132, Expect=7e-40]} {RNA1509_11522} {RNA1310_1228.2, RNA1509_11522} {RNA1509_11522, RNA815_2491}

Mlig455_055616 {REF} {Length: 2066} {Pfam: Golgin subfamily A member 7/ERF4 family [PF10256.11, score=44.8]} {Human: ENSG00000109220, CHIC2, cysteine rich hydrophobic domain 2, [RH, Score=162, Expect=4e-51]; ENSG00000204116, CHIC1, cysteine rich hydrophobic domain 1, [RH, Score=161, Expect=5e-50]} {Mouse: ENSMUSG00000029229, Chic2, cysteine-rich hydrophobic domain 2, [RH, Score=163, Expect=1e-51]; ENSMUSG00000031327, Chic1, cysteine-rich hydrophobic domain 1, [RH, Score=160, Expect=6e-50]} {Dmel: FBgn0046247, CG5938, [RH, Score=161, Expect=4e-51]} {Celegans: WBGene00044319, tag-266, Cysteine-rich hydrophobic protein, [Score=163, Expect=9e-52]} {Smed: dd_Smed_v6_4955_0_1, dd_Smed_v6_4955_0_1, [RH, Score=132, Expect=7e-40]} {RNA1509_11522} {RNA1310_1228.2} {RNA815_2491}