M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_53622

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_53622 21 0.44 Mlig455_020698

Neo: -

Age: -

 Mlig455_020698 {REF} {Length: 581} {NoTransDecoderORF} {RNA1310_138346} {RNA815_56547}

Cumulative graph for MligTC455_53622

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.029 0.733 0.99969 1.00000
RegionR2 -1.631 0.733 1.00000 1.00000
RegionR3 -0.468 0.733 0.99977 1.00000
RegionR4 1.742 0.733 1.00000 1.00000
RegionR5 0.16 0.733 0.99977 1.00000
RegionR6 -0.532 0.733 0.99992 1.00000
RegionR7 -0.364 0.733 1.00000 1.00000
RegionR8 0.063 0.733 0.99989 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 3.65 0.733 0.18163 0.92306
RegenerationR2 2.775 0.733 0.99943 1.00000
RegenerationR3 0.486 0.733 0.32364 0.75149
RegenerationR4 1.236 0.733 1.00000 1.00000
RegenerationR5 -0.909 0.733 0.99984 1.00000
RegenerationR6 3.155 0.733 0.98009 1.00000
RegenerationBL 3.086 0.733 1.00000 1.00000
RegenerationTP -0.927 0.733 0.99983 1.00000


Genes with expression patterns similar to MligTC455_53622

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_53622 21 0.44 Mlig455_020698

Neo: -

Age: -

 2 - - - 1.000 1.000 - Mlig455_020698 {REF} {Length: 581} {NoTransDecoderORF} {RNA1310_138346} {RNA815_56547}
2. MligTC455_23091 466 9.72 Mlig455_021894

Neo: -

Age: -

 1.67 - - - 0.705 0.965 - Mlig455_021894 {REF} {Length: 4939} {TRANSSPLICED} {RNA1509_12504, RNA1509_19502} {RNA1310_3897, RNA1509_12504, RNA1509_19502} {RNA1509_12504, RNA1509_19502, RNA815_21452}
3. MligTC455_33782 923 19.23 Mlig455_016500

Neo: Int S/G2/M

Age: -

 ZSCAN20 0.973 - - - - 0.973 - Mlig455_016500 {REF} {Length: 2318} {TRANSSPLICED} {Pfam: Zinc-finger double domain [PF13465.8, score=50.3]; C2H2-type zinc finger [PF13894.8, score=46.0]; Zinc finger, C2H2 type [PF00096.28, score=44.9]; Zinc-finger of C2H2 type [PF12874.9, score=27.1]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=19.2]} {Human: ENSG00000121903, ZSCAN20, zinc finger and SCAN domain containing 20, [Score=108, Expect=1e-25]; ENSG00000197951, ZNF71, zinc finger protein 71, [Score=103, Expect=4e-24]} {Mouse: ENSMUSG00000057101, Zfp180, zinc finger protein 180, [Score=104, Expect=2e-24]; ENSMUSG00000020491, 2810021J22Rik, RIKEN cDNA 2810021J22 gene, [Score=101, Expect=1e-23]; ENSMUSG00000050605, Zfp61, zinc finger protein 61, [Score=100, Expect=2e-23]; ENSMUSG00000055305, Zfp93, zinc finger protein 93, [Score=100, Expect=3e-23]; ENSMUSG00000052675, Zfp112, zinc finger protein 112, [Score=99.0, Expect=1e-22]} {Dmel: FBgn0028878, CG15269, [Score=90.5, Expect=6e-20]} {Celegans: WBGene00003909, pag-3, Zinc finger protein PAG-3, [Score=84.7, Expect=1e-18]} {Smed: dd_Smed_v6_9867_0_1, dd_Smed_v6_9867_0_1, [Score=85.1, Expect=1e-18]} {RNA1509_56583} {RNA1310_45418.1} {RNA815_18422.2}
4. MligTC455_41263 96 1.99 Mlig455_009993

Neo: -

Age: -

 BCR 0.971 - - - - 0.971 - Mlig455_009993 {REF} {Length: 3188} {Pfam: RhoGAP domain [PF00620.29, score=87.3]} {Human: ENSG00000186716, BCR, BCR, RhoGEF and GTPase activating protein, [Score=84.7, Expect=3e-19]; ENSG00000276016, ABR, ABR, RhoGEF and GTPase activating protein, [Score=82.8, Expect=1e-18]; ENSG00000278741, ABR, ABR, RhoGEF and GTPase activating protein, [Score=82.8, Expect=1e-18]; ENSG00000159842, ABR, ABR, RhoGEF and GTPase activating protein, [Score=82.8, Expect=1e-18]} {Mouse: ENSMUSG00000009681, Bcr, breakpoint cluster region, [Score=85.5, Expect=1e-19]; ENSMUSG00000017631, Abr, active BCR-related gene, [Score=82.8, Expect=9e-19]} {Dmel: FBgn0025836, RhoGAP1A, Rho GTPase activating protein at 1A, [Score=80.9, Expect=3e-18]} {Celegans: WBGene00009800, rrc-1, GTPase-activating protein rrc-1, [Score=73.6, Expect=9e-16]} {Smed: dd_Smed_v6_11121_0_1, dd_Smed_v6_11121_0_1, [Score=74.3, Expect=4e-16]} {RNA1509_36484} {RNA1310_27150.1} {RNA815_24756.1}
5. MligTC455_26252 224 4.66 Mlig455_009662, Mlig455_023083, Mlig455_070192

Neo: -

Age: -

 0.969 - - - - 0.969 -

Mlig455_009662 {REF} {Length: 2717} {tRNA: Val(CAC),pseudo, score=36.5} {RNA1509_10444} {RNA1310_2677.1} {RNA815_2733.1}

Mlig455_023083 {REF} {Length: 538} {NoTransDecoderORF} {tRNA: Val(CAC),pseudo, score=36.5} {RNA1509_21228} {RNA1310_20140} {RNA815_16852}

Mlig455_070192 {REF} {Length: 1085} {NoTransDecoderORF} {tRNA: Arg(ACG),pseudo, score=25.2} {RNA1509_21228} {RNA1310_20140} {RNA815_16852}
6. MligTC455_56674 10 0.21 Mlig455_036972

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_036972 {REF} {Length: 784} {NoTransDecoderORF}
7. MligTC455_18649 30 0.62 Mlig455_035441

Neo: -

Age: logFC(26M/2M)=0.426

 TNNT3 0.965 - - - - 0.965 - Mlig455_035441 {REF} {Length: 1447} {Pfam: Troponin [PF00992.22, score=40.8]} {Human: ENSG00000130595, TNNT3, troponin T3, fast skeletal type, [RH, Score=62.8, Expect=8e-11]; ENSG00000118194, TNNT2, troponin T2, cardiac type, [RH, Score=61.6, Expect=3e-10]} {Mouse: ENSMUSG00000026414, Tnnt2, troponin T2, cardiac, [RH, Score=64.7, Expect=2e-11]} {Dmel: FBgn0004169, up, upheld, [Score=120, Expect=9e-31]} {Celegans: WBGene00006587, tnt-2, TropoNin T, [Score=90.1, Expect=8e-20]} {Smed: dd_Smed_v6_375_0_1, dd_Smed_v6_375_0_1, [RH, Score=258, Expect=2e-84]} {RNA1509_55821} {RNA1310_24395} {RNA815_14986}
8. MligTC455_42252 249 5.19 Mlig455_038933

Neo: Int S/G2/M

Age: Down-Up-Down

 USP48 0.965 - - - - 0.965 - Mlig455_038933 {REF} {Length: 3472} {TRANSSPLICED} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=104.0]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=43.5]} {Human: ENSG00000090686, USP48, ubiquitin specific peptidase 48, [Score=85.1, Expect=1e-16]; ENSG00000136014, USP44, ubiquitin specific peptidase 44, [Score=83.2, Expect=1e-15]; ENSG00000106346, USP42, ubiquitin specific peptidase 42, [Score=82.0, Expect=4e-15]} {Mouse: ENSMUSG00000043411, Usp48, ubiquitin specific peptidase 48, [Score=91.7, Expect=1e-18]} {Dmel: FBgn0039214, puf, puffyeye, [Score=82.4, Expect=2e-15]} {Celegans: WBGene00010702, usp-33, Ubiquitin carboxyl-terminal hydrolase, [Score=80.1, Expect=4e-15]} {Smed: dd_Smed_v6_7150_0_4, dd_Smed_v6_7150_0_4, [Score=77.8, Expect=1e-14]} {RNA1509_17169, RNA1509_48658} {RNA1310_7010, RNA1509_17169, RNA1509_48658} {RNA1509_17169, RNA1509_48658, RNA815_4869}
9. MligTC455_47844 25 0.52 Mlig455_054684

Neo: -

Age: logFC(26M/2M)=-0.260

 RPGRIP1L 0.962 - - - - 0.962 - Mlig455_054684 {REF} {Length: 3774} {TRANSSPLICED} {Human: ENSG00000103494, RPGRIP1L, RPGRIP1 like, [Score=115, Expect=5e-26]} {Mouse: ENSMUSG00000033282, Rpgrip1l, Rpgrip1-like, [Score=111, Expect=5e-25]} {Smed: dd_Smed_v6_11425_0_1, dd_Smed_v6_11425_0_1, [Score=143, Expect=1e-35]} {RNA1509_12953} {RNA1310_4375.1} {RNA815_1280}
10. MligTC455_04009 478 9.96 Mlig455_001797

Neo: -

Age: -

 DGKQ 0.96 - - - - 0.960 - Mlig455_001797 {REF} {Length: 5042} {TRANSSPLICED} {Pfam: Diacylglycerol kinase accessory domain [PF00609.21, score=185.2]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=99.3]; Diacylglycerol kinase catalytic domain [PF00781.26, score=79.4]; Ras association (RalGDS/AF-6) domain [PF00788.25, score=38.7]} {Human: ENSG00000145214, DGKQ, diacylglycerol kinase theta, [RH, Score=650, Expect=0.0]} {Mouse: ENSMUSG00000004815, Dgkq, diacylglycerol kinase, theta, [RH, Score=667, Expect=0.0]} {Dmel: FBgn0051140, CG31140, [Score=978, Expect=0.0]} {Celegans: WBGene00000958, dgk-1, Diacylglycerol kinase, [Score=809, Expect=0.0]} {Smed: dd_Smed_v6_7792_0_5, dd_Smed_v6_7792_0_5, [RH, Score=1024, Expect=0.0]} {RNA1509_8388} {RNA1310_12564} {RNA815_1076.1}
11. MligTC455_22137 2395 49.89 Mlig455_024340

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_024340 {REF} {Length: 1781} {RNA1509_10674, RNA1509_58325} {RNA1310_29555.1, RNA1509_58325} {RNA1509_58325, RNA815_13134}
12. MligTC455_08711 57 1.2 Mlig455_012935

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_012935 {REF} {Length: 1084} {NoTransDecoderORF} {RNA1509_35472} {RNA1310_49774} {RNA815_41460.1}
13. MligTC455_48861 618 12.86 Mlig455_055354

Neo: -

Age: logFC(26M/2M)=-0.492

 0.953 - - - - 0.953 - Mlig455_055354 {REF} {Length: 2604} {Pfam: Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=40.7]; Autophagy protein 16 (ATG16) [PF08614.13, score=20.0]; SH3 domain [PF00018.30, score=19.0]} {Smed: dd_Smed_v6_834_0_1, dd_Smed_v6_834_0_1, [Score=57.0, Expect=2e-08]} {RNA1509_54914} {RNA1310_16283} {RNA815_6206.1}
14. MligTC455_26251 74 1.54 Mlig455_042876

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_042876 {REF} {Length: 1584} {tRNA: Val(CAC),pseudo, score=36.5} {RNA1509_27801} {RNA1310_2677.1} {RNA815_43902}
15. MligTC455_40218 801 16.69 Mlig455_013163

Neo: Int S/G2/M

Age: -

 0.952 - - - - 0.952 - Mlig455_013163 {REF} {Length: 1228} {RNA1509_14011, RNA1509_31133} {RNA1310_32604, RNA1509_31133} {RNA1509_31133, RNA815_11423.1}
16. MligTC455_32500 699 14.56 Mlig455_049574

Neo: Neoblast

Age: -

Regeneration-upregulated R6: 1.404

Regeneration-enriched R6: 1.404

 SRCAP 0.951 - - - - 0.951 - Mlig455_049574 {REF} {Length: 6427} {TRANSSPLICED} {Pfam: SNF2-related domain [PF00176.25, score=243.0]; Helicase conserved C-terminal domain [PF00271.33, score=66.0]; HSA [PF07529.15, score=46.8]; Type III restriction enzyme, res subunit [PF04851.17, score=26.2]; DEAD/DEAH box helicase [PF00270.31, score=18.8]} {Human: ENSG00000080603, SRCAP, Snf2 related CREBBP activator protein, [RH, Score=608, Expect=0.0]; ENSG00000282034, AC106886.5, novel transcript, [RH, Score=603, Expect=4e-178]} {Mouse: ENSMUSG00000107023, Gm42715, predicted gene 42715, [RH, Score=600, Expect=3e-177]; ENSMUSG00000053877, Srcap, Snf2-related CREBBP activator protein, [RH, Score=600, Expect=3e-177]} {Dmel: FBgn0020306, dom, domino, [RH, Score=814, Expect=0.0]} {Celegans: WBGene00007027, ssl-1, Helicase ssl-1, [RH, Score=691, Expect=0.0]} {Smed: dd_Smed_v6_8618_0_1, dd_Smed_v6_8618_0_1, [RH, Score=1136, Expect=0.0]} {RNA1509_18819, RNA1509_4627} {RNA1310_484.1, RNA1509_18819, RNA1509_4627} {RNA1509_18819, RNA1509_4627, RNA815_174.1}
17. MligTC455_42225 20 0.41 Mlig455_042394

Neo: -

Age: -

 CPQ 0.951 - - - - 0.951 - Mlig455_042394 {REF} {Length: 1554} {TRANSSPLICED} {Pfam: Peptidase family M28 [PF04389.19, score=87.4]; Peptidase family M20/M25/M40 [PF01546.30, score=27.3]; PA domain [PF02225.24, score=20.6]} {Human: ENSG00000104324, CPQ, carboxypeptidase Q, [RH, Score=370, Expect=7e-124]} {Mouse: ENSMUSG00000039007, Cpq, carboxypeptidase Q, [RH, Score=374, Expect=2e-125]} {Celegans: WBGene00020082, gcp-2.1, Glutamate carboxypeptidase 2 homolog, [Score=51.2, Expect=1e-06]} {RNA1509_11715} {RNA1310_19598.1, RNA1509_11715} {RNA1509_11715, RNA815_7922}
18. MligTC455_17708 297 6.19 Mlig455_067350

Neo: -

Age: -

 SIN3B 0.95 - - - - 0.950 - Mlig455_067350 {REF} {Length: 6212} {TRANSSPLICED} {Pfam: C-terminal domain of Sin3a protein [PF16879.7, score=140.7]; Paired amphipathic helix repeat [PF02671.23, score=115.5]; Sin3 family co-repressor [PF08295.14, score=111.5]} {Human: ENSG00000127511, SIN3B, SIN3 transcription regulator family member B, [RH, Score=500, Expect=1e-153]} {Mouse: ENSMUSG00000031622, Sin3b, transcriptional regulator, SIN3B (yeast), [RH, Score=507, Expect=1e-156]} {Dmel: FBgn0022764, Sin3A, [RH, Score=302, Expect=9e-83]} {Celegans: WBGene00004117, sin-3, Paired amphipathic helix protein sin-3, [RH, Score=113, Expect=9e-25]} {Smed: dd_Smed_v6_7034_0_1, dd_Smed_v6_7034_0_1, [RH, Score=310, Expect=3e-86]} {RNA1509_12438} {RNA1310_4111, RNA1509_12438} {RNA1509_12438, RNA815_5481}
19. MligTC455_46018 256 5.34 Mlig455_004929, Mlig455_019730

Neo: -

Age: -

Region-enriched R2: 3.065/0.00629

 OTX1 0.95 - - - - 0.950 -

Mlig455_004929 {REF} {Length: 2609} {Pfam: Homeodomain [PF00046.31, score=71.5]} {Human: ENSG00000115507, OTX1, orthodenticle homeobox 1, [RH, Score=135, Expect=5e-36]} {Mouse: ENSMUSG00000005917, Otx1, orthodenticle homeobox 1, [RH, Score=135, Expect=5e-36]} {Dmel: FBgn0004102, oc, ocelliless, [RH, Score=120, Expect=1e-29]} {Celegans: WBGene00006652, ttx-1, Homeodomain protein TTX-1, [RH, Score=118, Expect=6e-30]} {Smed: dd_Smed_v6_15516_0_1, dd_Smed_v6_15516_0_1, [RH, Score=90.1, Expect=1e-19]} {RNA1509_34770} {RNA1310_12365.2} {RNA815_33468}

Mlig455_019730 {REF} {Length: 2056} {Pfam: Homeodomain [PF00046.31, score=73.3]} {Human: ENSG00000115507, OTX1, orthodenticle homeobox 1, [RH, Score=135, Expect=8e-36]} {Mouse: ENSMUSG00000005917, Otx1, orthodenticle homeobox 1, [RH, Score=135, Expect=6e-36]} {Dmel: FBgn0004102, oc, ocelliless, [RH, Score=121, Expect=8e-30]} {Celegans: WBGene00006652, ttx-1, Homeodomain protein TTX-1, [Score=122, Expect=4e-31]} {Smed: dd_Smed_v6_63359_0_2, dd_Smed_v6_63359_0_2, [Score=93.2, Expect=5e-23]} {RNA1509_34770} {RNA1310_12365.2} {RNA815_33468}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA