TomoSeq data search

Data search

Results for MligTC455_53709

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_53709

8406

175.13

Mlig455_064314, Mlig455_064346

Neo: -

Age: Down-Down-Up

TARDBP

Mlig455_064314 {REF} {Length: 1569} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=91.4]; Transactive response DNA-binding protein N-terminal domain [PF18694.3, score=84.5]; RNA recognition motif [PF16367.7, score=25.5]} {Human: ENSG00000120948, TARDBP, TAR DNA binding protein, [Score=283, Expect=8e-92]; ENSG00000277726, AL109811.4, novel protein, [Score=279, Expect=5e-92]} {Mouse: ENSMUSG00000041459, Tardbp, TAR DNA binding protein, [Score=285, Expect=4e-94]} {Dmel: FBgn0025790, TBPH, TAR DNA-binding protein-43 homolog, [Score=277, Expect=2e-88]} {Celegans: WBGene00006514, tdp-1, Tar DNA-binding protein homolog 1, [Score=148, Expect=1e-40]} {Smed: dd_Smed_v6_10863_0_1, dd_Smed_v6_10863_0_1, [RH, Score=231, Expect=5e-72]} {RNA1509_2993, RNA1509_42130, RNA1509_54894} {RNA1310_25239, RNA1509_2993, RNA1509_42130, RNA1509_54894} {RNA1509_2993, RNA1509_42130, RNA1509_54894, RNA815_4172.1}

Mlig455_064346 {REF} {Length: 1591} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=91.4]; Transactive response DNA-binding protein N-terminal domain [PF18694.3, score=84.5]; RNA recognition motif [PF16367.7, score=25.5]} {Human: ENSG00000120948, TARDBP, TAR DNA binding protein, [Score=283, Expect=8e-92]; ENSG00000277726, AL109811.4, novel protein, [Score=279, Expect=5e-92]} {Mouse: ENSMUSG00000041459, Tardbp, TAR DNA binding protein, [Score=285, Expect=4e-94]} {Dmel: FBgn0025790, TBPH, TAR DNA-binding protein-43 homolog, [Score=277, Expect=2e-88]} {Celegans: WBGene00006514, tdp-1, Tar DNA-binding protein homolog 1, [Score=148, Expect=1e-40]} {Smed: dd_Smed_v6_10863_0_1, dd_Smed_v6_10863_0_1, [RH, Score=231, Expect=5e-72]} {RNA1509_16248, RNA1509_2993} {RNA1310_25239, RNA1509_16248} {RNA1509_16248, RNA815_4172.1}

Cumulative graph for MligTC455_53709

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.155	7.558	0.71365	1.00000
RegionR2	-0.482	7.558	0.08310	0.35362
RegionR3	-0.195	7.558	0.41040	0.93616
RegionR4	0.524	7.558	0.04413	0.17725
RegionR5	0.438	7.558	0.04518	0.17421
RegionR6	0.162	7.558	0.48098	1.00000
RegionR7	-0.015	7.558	0.95207	1.00000
RegionR8	-0.277	7.558	0.35156	0.98502

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-2.062	7.558	0.00342	0.29750
RegenerationR2	0.379	7.558	0.18039	0.62315
RegenerationR3	0.617	7.558	0.03445	0.32965
RegenerationR4	-0.031	7.558	0.91665	1.00000
RegenerationR5	-0.083	7.558	0.76914	0.97864
RegenerationR6	0.433	7.558	0.13500	0.45079
RegenerationBL	0.745	7.558	0.00355	0.05221
RegenerationTP	0.116	7.558	0.69082	1.00000

Genes with expression patterns similar to MligTC455_53709

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_53709	8406	175.13	Mlig455_064314, Mlig455_064346	Neo: - Age: Down-Down-Up	TARDBP	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_064314 {REF} {Length: 1569} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=91.4]; Transactive response DNA-binding protein N-terminal domain [PF18694.3, score=84.5]; RNA recognition motif [PF16367.7, score=25.5]} {Human: ENSG00000120948, TARDBP, TAR DNA binding protein, [Score=283, Expect=8e-92]; ENSG00000277726, AL109811.4, novel protein, [Score=279, Expect=5e-92]} {Mouse: ENSMUSG00000041459, Tardbp, TAR DNA binding protein, [Score=285, Expect=4e-94]} {Dmel: FBgn0025790, TBPH, TAR DNA-binding protein-43 homolog, [Score=277, Expect=2e-88]} {Celegans: WBGene00006514, tdp-1, Tar DNA-binding protein homolog 1, [Score=148, Expect=1e-40]} {Smed: dd_Smed_v6_10863_0_1, dd_Smed_v6_10863_0_1, [RH, Score=231, Expect=5e-72]} {RNA1509_2993, RNA1509_42130, RNA1509_54894} {RNA1310_25239, RNA1509_2993, RNA1509_42130, RNA1509_54894} {RNA1509_2993, RNA1509_42130, RNA1509_54894, RNA815_4172.1} Mlig455_064346 {REF} {Length: 1591} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=91.4]; Transactive response DNA-binding protein N-terminal domain [PF18694.3, score=84.5]; RNA recognition motif [PF16367.7, score=25.5]} {Human: ENSG00000120948, TARDBP, TAR DNA binding protein, [Score=283, Expect=8e-92]; ENSG00000277726, AL109811.4, novel protein, [Score=279, Expect=5e-92]} {Mouse: ENSMUSG00000041459, Tardbp, TAR DNA binding protein, [Score=285, Expect=4e-94]} {Dmel: FBgn0025790, TBPH, TAR DNA-binding protein-43 homolog, [Score=277, Expect=2e-88]} {Celegans: WBGene00006514, tdp-1, Tar DNA-binding protein homolog 1, [Score=148, Expect=1e-40]} {Smed: dd_Smed_v6_10863_0_1, dd_Smed_v6_10863_0_1, [RH, Score=231, Expect=5e-72]} {RNA1509_16248, RNA1509_2993} {RNA1310_25239, RNA1509_16248} {RNA1509_16248, RNA815_4172.1}
2.	MligTC455_53708	4242	88.38	Mlig455_019056	Neo: - Age: logFC(26M/2M)=1.146	TARDBP	5.868	0.999	0.997	0.994	0.891	0.997	0.990	Mlig455_019056 {REF} {Length: 977} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=43.3]} {Human: ENSG00000120948, TARDBP, TAR DNA binding protein, [Score=111, Expect=3e-30]; ENSG00000277726, AL109811.4, novel protein, [Score=108, Expect=5e-28]} {Mouse: ENSMUSG00000041459, Tardbp, TAR DNA binding protein, [Score=114, Expect=4e-30]} {Dmel: FBgn0025790, TBPH, TAR DNA-binding protein-43 homolog, [Score=101, Expect=1e-24]} {Celegans: WBGene00006514, tdp-1, Tar DNA-binding protein homolog 1, [Score=58.9, Expect=4e-10]} {Smed: dd_Smed_v6_3328_0_2, dd_Smed_v6_3328_0_2, [Score=98.6, Expect=5e-24]} {RNA1509_18436, RNA1509_7533} {RNA1310_63424.1, RNA1509_18436} {RNA1509_18436, RNA815_17289}
3.	MligTC455_16359	283	5.89	Mlig455_000559	Neo: - Age: -	ZMPSTE24	1.816	-	-	-	-	0.860	0.956	Mlig455_000559 {REF} {Length: 5254} {TRANSSPLICED} {Pfam: CAAX prenyl protease N-terminal, five membrane helices [PF16491.7, score=198.3]; Peptidase family M48 [PF01435.20, score=147.3]; DEAD/DEAH box helicase [PF00270.31, score=83.0]; Helicase conserved C-terminal domain [PF00271.33, score=70.5]; Amidohydrolase family [PF01979.22, score=49.6]; Amidohydrolase family [PF07969.13, score=29.1]} {Human: ENSG00000084073, ZMPSTE24, zinc metallopeptidase STE24, [RH, Score=429, Expect=5e-137]} {Mouse: ENSMUSG00000043207, Zmpste24, zinc metallopeptidase, STE24, [RH, Score=440, Expect=2e-141]} {Dmel: FBgn0034176, ste24a, prenyl protease type I, [RH, Score=377, Expect=4e-118]} {Celegans: WBGene00001405, fce-1, CAAX prenyl protease 1 homolog, [RH, Score=376, Expect=4e-118]} {Smed: dd_Smed_v6_5271_0_1, dd_Smed_v6_5271_0_1, [RH, Score=436, Expect=3e-140]} {RNA1509_27788} {RNA1310_12834} {RNA815_2575}
4.	MligTC455_37978	861	17.93	Mlig455_044337	Neo: - Age: -	CYB5D2	1.774	-	-	-	0.955	-	0.819	Mlig455_044337 {REF} {Length: 1972} {TRANSSPLICED} {Pfam: Cytochrome b5-like Heme/Steroid binding domain [PF00173.30, score=25.0]} {Human: ENSG00000167740, CYB5D2, cytochrome b5 domain containing 2, [RH, Score=88.6, Expect=4e-20]} {Mouse: ENSMUSG00000057778, Cyb5d2, cytochrome b5 domain containing 2, [RH, Score=80.5, Expect=2e-17]} {Dmel: FBgn0030099, CG12056, [RH, Score=67.8, Expect=8e-13]} {Smed: dd_Smed_v6_5886_0_1, dd_Smed_v6_5886_0_1, [RH, Score=97.4, Expect=5e-24]} {RNA1509_18564} {RNA1310_26333.1, RNA1509_18564} {RNA1509_18564, RNA815_13358}
5.	MligTC455_46116	2265	47.19	Mlig455_017253, Mlig455_017331	Neo: Int S/G2/M Age: Down-Up-Up, logFC(26M/2M)=0.208	IPO7	1.741	-	-	-	0.956	-	0.785	Mlig455_017253 {REF} {Length: 3566} {TRANSSPLICED} {Pfam: Importin-beta N-terminal domain [PF03810.21, score=51.9]} {Human: ENSG00000205339, IPO7, importin 7, [Score=443, Expect=4e-138]; ENSG00000133704, IPO8, importin 8, [Score=428, Expect=2e-132]} {Mouse: ENSMUSG00000066232, Ipo7, importin 7, [Score=444, Expect=2e-138]; ENSMUSG00000040029, Ipo8, importin 8, [Score=426, Expect=6e-132]} {Dmel: FBgn0026252, msk, moleskin, [Score=489, Expect=2e-155]} {Smed: dd_Smed_v6_728_0_1, dd_Smed_v6_728_0_1, [Score=358, Expect=3e-107]} {RNA1509_8105} {RNA1310_3317} {RNA815_961} Mlig455_017331 {REF} {Length: 3623} {TRANSSPLICED} {Pfam: Importin-beta N-terminal domain [PF03810.21, score=51.8]} {Human: ENSG00000205339, IPO7, importin 7, [Score=456, Expect=1e-142]; ENSG00000133704, IPO8, importin 8, [Score=439, Expect=3e-136]} {Mouse: ENSMUSG00000066232, Ipo7, importin 7, [Score=456, Expect=7e-143]; ENSMUSG00000040029, Ipo8, importin 8, [Score=436, Expect=1e-135]} {Dmel: FBgn0026252, msk, moleskin, [Score=501, Expect=7e-160]} {Smed: dd_Smed_v6_728_0_1, dd_Smed_v6_728_0_1, [Score=359, Expect=2e-107]} {RNA1509_8105} {RNA1310_3317} {RNA815_961}
6.	MligTC455_50033	644	13.41	Mlig455_018586	Neo: - Age: -	SLC30A6	0.975	-	-	-	0.975	-	-	Mlig455_018586 {REF} {Length: 1558} {TRANSSPLICED} {Pfam: Cation efflux family [PF01545.23, score=58.6]} {Human: ENSG00000152683, SLC30A6, solute carrier family 30 member 6, [RH, Score=292, Expect=4e-94]} {Mouse: ENSMUSG00000024069, Slc30a6, solute carrier family 30 (zinc transporter), member 6, [RH, Score=290, Expect=2e-93]} {Dmel: FBgn0037875, ZnT86D, Zinc transporter 86D, [Score=54.3, Expect=1e-07]} {Celegans: WBGene00006590, toc-1, Similar to Transporter Of divalent Cations, [RH, Score=176, Expect=4e-50]} {Smed: dd_Smed_v6_7908_0_4, dd_Smed_v6_7908_0_4, [RH, Score=277, Expect=8e-90]} {RNA1509_19597} {RNA1310_20716, RNA1509_19597} {RNA1509_19597, RNA815_8815}
7.	MligTC455_42718	1123	23.4	Mlig455_021424	Neo: Int S/G2/M Age: Up-Down-Down Region-specific R4: 1.965 Region-enriched R4: 1.408/0.00068	ACSL4	0.964	-	-	-	0.964	-	-	Mlig455_021424 {REF} {Length: 3672} {Pfam: AMP-binding enzyme [PF00501.30, score=303.6]; AMP-binding enzyme C-terminal domain [PF13193.8, score=20.7]} {Human: ENSG00000068366, ACSL4, acyl-CoA synthetase long chain family member 4, [Score=590, Expect=0.0]} {Mouse: ENSMUSG00000031278, Acsl4, acyl-CoA synthetase long-chain family member 4, [Score=584, Expect=0.0]; ENSMUSG00000032883, Acsl3, acyl-CoA synthetase long-chain family member 3, [Score=559, Expect=0.0]} {Dmel: FBgn0263120, Acsl, Acyl-CoA synthetase long-chain, [Score=535, Expect=1e-180]} {Celegans: WBGene00018152, acs-4, Fatty Acid CoA Synthetase family, [Score=491, Expect=2e-163]} {Smed: dd_Smed_v6_3021_0_1, dd_Smed_v6_3021_0_1, [Score=537, Expect=0.0]} {RNA1509_6316} {RNA1310_502.1, RNA1509_6316} {RNA1509_6316, RNA815_7661}
8.	MligTC455_19808	4367	90.98	Mlig455_044395	Neo: - Age: -	RAB1A	0.952	-	-	-	0.952	-	-	Mlig455_044395 {REF} {Length: 1545} {Pfam: Ras family [PF00071.24, score=223.4]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=128.2]; ADP-ribosylation factor family [PF00025.23, score=62.4]; RsgA GTPase [PF03193.18, score=28.3]; Elongation factor Tu GTP binding domain [PF00009.29, score=24.3]; Gtr1/RagA G protein conserved region [PF04670.14, score=24.1]; 50S ribosome-binding GTPase [PF01926.25, score=23.5]; Signal recognition particle receptor beta subunit [PF09439.12, score=23.1]} {Human: ENSG00000138069, RAB1A, RAB1A, member RAS oncogene family, [RH, Score=345, Expect=4e-122]; ENSG00000174903, RAB1B, RAB1B, member RAS oncogene family, [RH, Score=341, Expect=7e-121]} {Mouse: ENSMUSG00000020149, Rab1a, RAB1A, member RAS oncogene family, [RH, Score=345, Expect=3e-122]; ENSMUSG00000024870, Rab1b, RAB1B, member RAS oncogene family, [RH, Score=338, Expect=6e-120]} {Dmel: FBgn0285937, Rab1, [RH, Score=324, Expect=2e-114]} {Celegans: WBGene00004266, rab-1, RAB family, [RH, Score=326, Expect=4e-115]} {Smed: dd_Smed_v6_488_0_1, dd_Smed_v6_488_0_1, [RH, Score=334, Expect=2e-118]} {RNA1509_18503, RNA1509_53870, RNA1509_8585, RNA1509_873} {RNA1310_21790, RNA1509_18503, RNA1509_53870, RNA1509_8585, RNA1509_873} {RNA1509_18503, RNA1509_53870, RNA1509_8585, RNA1509_873, RNA815_8267.2}
9.	MligTC455_34832	18458	384.53	Mlig455_053297	Neo: Int S/G2/M Age: Down-Down-Up		0.95	-	-	-	-	-	0.950	Mlig455_053297 {REF} {Length: 387} {TRANSSPLICED} {Smed: dd_Smed_v6_178_0_1, dd_Smed_v6_178_0_1, [Score=44.7, Expect=2e-07]} {RNA1509_513} {RNA1310_37149} {RNA815_17336.1}

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