M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_19808

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_19808 4367 90.98 Mlig455_044395

Neo: -

Age: -

 RAB1A Mlig455_044395 {REF} {Length: 1545} {Pfam: Ras family [PF00071.24, score=223.4]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=128.2]; ADP-ribosylation factor family [PF00025.23, score=62.4]; RsgA GTPase [PF03193.18, score=28.3]; Elongation factor Tu GTP binding domain [PF00009.29, score=24.3]; Gtr1/RagA G protein conserved region [PF04670.14, score=24.1]; 50S ribosome-binding GTPase [PF01926.25, score=23.5]; Signal recognition particle receptor beta subunit [PF09439.12, score=23.1]} {Human: ENSG00000138069, RAB1A, RAB1A, member RAS oncogene family, [RH, Score=345, Expect=4e-122]; ENSG00000174903, RAB1B, RAB1B, member RAS oncogene family, [RH, Score=341, Expect=7e-121]} {Mouse: ENSMUSG00000020149, Rab1a, RAB1A, member RAS oncogene family, [RH, Score=345, Expect=3e-122]; ENSMUSG00000024870, Rab1b, RAB1B, member RAS oncogene family, [RH, Score=338, Expect=6e-120]} {Dmel: FBgn0285937, Rab1, [RH, Score=324, Expect=2e-114]} {Celegans: WBGene00004266, rab-1, RAB family, [RH, Score=326, Expect=4e-115]} {Smed: dd_Smed_v6_488_0_1, dd_Smed_v6_488_0_1, [RH, Score=334, Expect=2e-118]} {RNA1509_18503, RNA1509_53870, RNA1509_8585, RNA1509_873} {RNA1310_21790, RNA1509_18503, RNA1509_53870, RNA1509_8585, RNA1509_873} {RNA1509_18503, RNA1509_53870, RNA1509_8585, RNA1509_873, RNA815_8267.2}

Cumulative graph for MligTC455_19808

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.335 6.621 0.39009 1.00000
RegionR2 -0.048 6.621 0.84054 1.00000
RegionR3 0.031 6.621 0.87684 1.00000
RegionR4 -0.028 6.621 0.90265 1.00000
RegionR5 -0.176 6.621 0.34916 0.69844
RegionR6 0.252 6.621 0.19858 0.76825
RegionR7 -0.482 6.621 0.04722 0.41802
RegionR8 0.116 6.621 0.67229 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.643 6.621 0.25026 0.96639
RegenerationR2 -0.177 6.621 0.45529 0.85004
RegenerationR3 -0.081 6.621 0.74627 0.96303
RegenerationR4 -0.287 6.621 0.25567 0.70378
RegenerationR5 -0.397 6.621 0.09970 0.48157
RegenerationR6 0.022 6.621 0.92711 1.00000
RegenerationBL 0.059 6.621 0.81649 1.00000
RegenerationTP -0.045 6.621 0.87278 1.00000


Genes with expression patterns similar to MligTC455_19808

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_19808 4367 90.98 Mlig455_044395

Neo: -

Age: -

 RAB1A 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_044395 {REF} {Length: 1545} {Pfam: Ras family [PF00071.24, score=223.4]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=128.2]; ADP-ribosylation factor family [PF00025.23, score=62.4]; RsgA GTPase [PF03193.18, score=28.3]; Elongation factor Tu GTP binding domain [PF00009.29, score=24.3]; Gtr1/RagA G protein conserved region [PF04670.14, score=24.1]; 50S ribosome-binding GTPase [PF01926.25, score=23.5]; Signal recognition particle receptor beta subunit [PF09439.12, score=23.1]} {Human: ENSG00000138069, RAB1A, RAB1A, member RAS oncogene family, [RH, Score=345, Expect=4e-122]; ENSG00000174903, RAB1B, RAB1B, member RAS oncogene family, [RH, Score=341, Expect=7e-121]} {Mouse: ENSMUSG00000020149, Rab1a, RAB1A, member RAS oncogene family, [RH, Score=345, Expect=3e-122]; ENSMUSG00000024870, Rab1b, RAB1B, member RAS oncogene family, [RH, Score=338, Expect=6e-120]} {Dmel: FBgn0285937, Rab1, [RH, Score=324, Expect=2e-114]} {Celegans: WBGene00004266, rab-1, RAB family, [RH, Score=326, Expect=4e-115]} {Smed: dd_Smed_v6_488_0_1, dd_Smed_v6_488_0_1, [RH, Score=334, Expect=2e-118]} {RNA1509_18503, RNA1509_53870, RNA1509_8585, RNA1509_873} {RNA1310_21790, RNA1509_18503, RNA1509_53870, RNA1509_8585, RNA1509_873} {RNA1509_18503, RNA1509_53870, RNA1509_8585, RNA1509_873, RNA815_8267.2}
2. MligTC455_23112 2075 43.23 Mlig455_027165

Neo: -

Age: -

 EIF4G3 0.978 - - - 0.978 - - Mlig455_027165 {REF} {Length: 6148} {Pfam: MIF4G domain [PF02854.21, score=101.5]; MA3 domain [PF02847.19, score=22.9]} {Human: ENSG00000075151, EIF4G3, eukaryotic translation initiation factor 4 gamma 3, [Score=303, Expect=3e-83]; ENSG00000114867, EIF4G1, eukaryotic translation initiation factor 4 gamma 1, [Score=292, Expect=1e-79]} {Mouse: ENSMUSG00000028760, Eif4g3, eukaryotic translation initiation factor 4 gamma, 3, [Score=311, Expect=7e-86]} {Dmel: FBgn0023213, eIF4G1, eukaryotic translation initiation factor 4G1, [RH, Score=160, Expect=6e-39]} {Smed: dd_Smed_v6_10618_0_1, dd_Smed_v6_10618_0_1, [Score=209, Expect=2e-59]} {RNA1509_5307} {RNA1310_788.1} {RNA815_583}
3. MligTC455_37978 861 17.93 Mlig455_044337

Neo: -

Age: -

 CYB5D2 0.965 - - - 0.965 - - Mlig455_044337 {REF} {Length: 1972} {TRANSSPLICED} {Pfam: Cytochrome b5-like Heme/Steroid binding domain [PF00173.30, score=25.0]} {Human: ENSG00000167740, CYB5D2, cytochrome b5 domain containing 2, [RH, Score=88.6, Expect=4e-20]} {Mouse: ENSMUSG00000057778, Cyb5d2, cytochrome b5 domain containing 2, [RH, Score=80.5, Expect=2e-17]} {Dmel: FBgn0030099, CG12056, [RH, Score=67.8, Expect=8e-13]} {Smed: dd_Smed_v6_5886_0_1, dd_Smed_v6_5886_0_1, [RH, Score=97.4, Expect=5e-24]} {RNA1509_18564} {RNA1310_26333.1, RNA1509_18564} {RNA1509_18564, RNA815_13358}
4. MligTC455_31906 195 4.06 Mlig455_068976

Neo: -

Age: Up-Up-Down

 0.953 - - - 0.953 - - Mlig455_068976 {REF} {Length: 6455} {Pfam: Bacterial transferase hexapeptide (six repeats) [PF00132.26, score=26.5]} {RNA1509_31473} {RNA1310_5450.1} {RNA815_16253.2}
5. MligTC455_53709 8406 175.13 Mlig455_064314, Mlig455_064346

Neo: -

Age: Down-Down-Up

 TARDBP 0.952 - - - 0.952 - -

Mlig455_064314 {REF} {Length: 1569} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=91.4]; Transactive response DNA-binding protein N-terminal domain [PF18694.3, score=84.5]; RNA recognition motif [PF16367.7, score=25.5]} {Human: ENSG00000120948, TARDBP, TAR DNA binding protein, [Score=283, Expect=8e-92]; ENSG00000277726, AL109811.4, novel protein, [Score=279, Expect=5e-92]} {Mouse: ENSMUSG00000041459, Tardbp, TAR DNA binding protein, [Score=285, Expect=4e-94]} {Dmel: FBgn0025790, TBPH, TAR DNA-binding protein-43 homolog, [Score=277, Expect=2e-88]} {Celegans: WBGene00006514, tdp-1, Tar DNA-binding protein homolog 1, [Score=148, Expect=1e-40]} {Smed: dd_Smed_v6_10863_0_1, dd_Smed_v6_10863_0_1, [RH, Score=231, Expect=5e-72]} {RNA1509_2993, RNA1509_42130, RNA1509_54894} {RNA1310_25239, RNA1509_2993, RNA1509_42130, RNA1509_54894} {RNA1509_2993, RNA1509_42130, RNA1509_54894, RNA815_4172.1}

Mlig455_064346 {REF} {Length: 1591} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=91.4]; Transactive response DNA-binding protein N-terminal domain [PF18694.3, score=84.5]; RNA recognition motif [PF16367.7, score=25.5]} {Human: ENSG00000120948, TARDBP, TAR DNA binding protein, [Score=283, Expect=8e-92]; ENSG00000277726, AL109811.4, novel protein, [Score=279, Expect=5e-92]} {Mouse: ENSMUSG00000041459, Tardbp, TAR DNA binding protein, [Score=285, Expect=4e-94]} {Dmel: FBgn0025790, TBPH, TAR DNA-binding protein-43 homolog, [Score=277, Expect=2e-88]} {Celegans: WBGene00006514, tdp-1, Tar DNA-binding protein homolog 1, [Score=148, Expect=1e-40]} {Smed: dd_Smed_v6_10863_0_1, dd_Smed_v6_10863_0_1, [RH, Score=231, Expect=5e-72]} {RNA1509_16248, RNA1509_2993} {RNA1310_25239, RNA1509_16248} {RNA1509_16248, RNA815_4172.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA