M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_54149

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_54149 367 7.64 Mlig455_002524

Neo: -

Age: -

 Mlig455_002524 {REF} {Length: 1803} {TRANSSPLICED} {RNA1310_34799.1} {RNA815_13806}

Cumulative graph for MligTC455_54149

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.979 3.272 0.42743 1.00000
RegionR2 -0.845 3.272 0.12685 0.44192
RegionR3 -0.992 3.272 0.03686 0.33407
RegionR4 0.572 3.272 0.26467 0.56896
RegionR5 -0.712 3.272 0.10142 0.30812
RegionR6 -0.927 3.272 0.06078 0.46283
RegionR7 1.045 3.272 0.04593 0.41255
RegionR8 0.88 3.272 0.19435 0.78933

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -7.217 3.272 0.08348 0.78241
RegenerationR2 0.483 3.272 0.29393 0.73672
RegenerationR3 0.583 3.272 0.28002 0.71281
RegenerationR4 -0.293 3.272 0.55825 0.89604
RegenerationR5 0.468 3.272 0.33968 0.75756
RegenerationR6 0.841 3.272 0.13607 0.45256
RegenerationBL -0.074 3.272 0.89847 1.00000
RegenerationTP -0.546 3.272 0.36274 0.80269


Genes with expression patterns similar to MligTC455_54149

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_54149 367 7.64 Mlig455_002524

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_002524 {REF} {Length: 1803} {TRANSSPLICED} {RNA1310_34799.1} {RNA815_13806}
2. MligTC455_40240 1636 34.08 Mlig455_028306

Neo: -

Age: -

Region-enriched R4: 1.764/0.00013

 UBE2U 0.963 - - - - 0.963 - Mlig455_028306 {REF} {Length: 1313} {TRANSSPLICED} {Pfam: Ubiquitin-conjugating enzyme [PF00179.28, score=94.1]} {Human: ENSG00000177414, UBE2U, ubiquitin conjugating enzyme E2 U, [RH, Score=126, Expect=4e-33]} {Mouse: ENSMUSG00000069733, Ube2u, ubiquitin-conjugating enzyme E2U (putative), [RH, Score=114, Expect=1e-28]} {Dmel: FBgn0267383, Ubc87F, Ubiquitin conjugating enzyme 87F, [Score=81.6, Expect=3e-18]} {Celegans: WBGene00006704, ubc-7, Probable ubiquitin-conjugating enzyme E2 7, [Score=81.6, Expect=2e-18]} {Smed: dd_Smed_v6_998_0_1, dd_Smed_v6_998_0_1, [Score=77.0, Expect=9e-17]} {RNA1509_12895} {RNA1310_17637} {RNA815_16983}
3. MligTC455_39404 172 3.59 Mlig455_039240, Mlig455_053901

Neo: -

Age: Down-Up-Down

 ASIC1 0.962 - - 0.962 - - -

Mlig455_039240 {REF} {Length: 2885} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=208.9]} {Human: ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [Score=61.2, Expect=4e-09]} {Mouse: ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=58.5, Expect=2e-08]} {Celegans: WBGene00003168, mec-4, Degenerin mec-4, [Score=64.3, Expect=2e-10]} {Smed: dd_Smed_v6_12878_0_1, dd_Smed_v6_12878_0_1, [Score=116, Expect=5e-27]} {RNA1509_33503} {RNA1310_10134} {RNA815_5943}

Mlig455_053901 {REF} {Length: 3001} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=208.9]} {Human: ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [Score=61.2, Expect=4e-09]} {Mouse: ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=58.5, Expect=2e-08]} {Celegans: WBGene00003168, mec-4, Degenerin mec-4, [Score=64.3, Expect=2e-10]} {Smed: dd_Smed_v6_12878_0_1, dd_Smed_v6_12878_0_1, [Score=116, Expect=5e-27]} {RNA1509_33503} {RNA1310_10134, RNA1509_33503} {RNA1509_33503, RNA815_5943}
4. MligTC455_29339 176 3.67 Mlig455_018221, Mlig455_036131

Neo: Irradiation

Age: Up-Down-Down

 CNBP 0.957 - - - - 0.957 -

Mlig455_018221 {REF} {Length: 5982} {Pfam: Zinc knuckle [PF00098.25, score=25.6]} {RNA1509_21798} {RNA1310_927.1} {RNA815_827}

Mlig455_036131 {REF} {Length: 4130} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=54.5]; gag-polyprotein putative aspartyl protease [PF13975.8, score=33.3]; Aspartyl protease [PF13650.8, score=23.3]; Zinc knuckle [PF00098.25, score=23.1]} {Human: ENSG00000169714, CNBP, CCHC-type zinc finger nucleic acid binding protein, [Score=50.1, Expect=2e-06]} {Mouse: ENSMUSG00000030057, Cnbp, cellular nucleic acid binding protein, [Score=50.1, Expect=1e-06]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=112, Expect=1e-25]} {RNA1509_21798} {RNA1310_927.1} {RNA815_827}
5. MligTC455_29523 492 10.24 Mlig455_016684

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=1.196

 R3HCC1 0.951 - - - - - 0.951 Mlig455_016684 {REF} {Length: 2467} {Human: ENSG00000104679, R3HCC1, R3H domain and coiled-coil containing 1, [RH, Score=60.1, Expect=3e-09]} {Mouse: ENSMUSG00000034194, R3hcc1, R3H domain and coiled-coil containing 1, [RH, Score=58.2, Expect=8e-09]} {RNA1509_18488} {RNA1310_14196.1} {RNA815_3151.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA