M. lignano Tomo-Seq
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Results for MligTC455_54161

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_54161 250 5.22 Mlig455_010248

Neo: -

Age: -

 Mlig455_010248 {REF} {Length: 1335} {NoTransDecoderORF} {RNA1310_42356} {RNA815_22904}

Cumulative graph for MligTC455_54161

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.789 2.833 0.64458 1.00000
RegionR2 -0.271 2.833 0.65892 0.99188
RegionR3 -0.746 2.833 0.18427 0.71773
RegionR4 1.138 2.833 0.10783 0.32339
RegionR5 -0.629 2.833 0.26159 0.58290
RegionR6 -0.4 2.833 0.48293 1.00000
RegionR7 1.063 2.833 0.08771 0.56812
RegionR8 -0.945 2.833 0.35672 0.99149

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.26 2.833 0.90623 1.00000
RegenerationR2 -0.214 2.833 0.65475 0.93836
RegenerationR3 -0.952 2.833 0.13609 0.56090
RegenerationR4 -1.225 2.833 0.05979 0.39196
RegenerationR5 0.225 2.833 0.69890 0.95112
RegenerationR6 -0.113 2.833 0.85333 1.00000
RegenerationBL 0.225 2.833 0.74738 1.00000
RegenerationTP -0.791 2.833 0.36715 0.80545


Genes with expression patterns similar to MligTC455_54161

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_54161 250 5.22 Mlig455_010248

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_010248 {REF} {Length: 1335} {NoTransDecoderORF} {RNA1310_42356} {RNA815_22904}
2. MligTC455_47309 569 11.85 Mlig455_047902, Mlig455_047990

Neo: -

Age: logFC(26M/2M)=-0.322

 NSF 2.453 - 0.755 - 0.737 - 0.961

Mlig455_047902 {REF} {Length: 3210} {TRANSSPLICED} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=169.7]; AAA+ lid domain [PF17862.3, score=38.2]; AAA ATPase domain [PF13191.8, score=34.7]; Cell division protein 48 (CDC48), N-terminal domain [PF02359.20, score=32.6]; AAA domain [PF13401.8, score=29.7]; AAA domain [PF13173.8, score=29.2]; TIP49 P-loop domain [PF06068.15, score=28.7]; NACHT domain [PF05729.14, score=27.2]; AAA domain (dynein-related subfamily) [PF07728.16, score=26.0]; AAA domain (Cdc48 subfamily) [PF07724.16, score=25.6]; AAA domain [PF13238.8, score=25.5]; AAA domain [PF13671.8, score=22.9]; Threonylcarbamoyl adenosine biosynthesis protein TsaE [PF02367.19, score=22.5]; RNA helicase [PF00910.24, score=22.0]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=21.8]; Cell division protein 48 (CDC48), domain 2 [PF02933.19, score=21.5]; ATPase domain predominantly from Archaea [PF01637.20, score=21.2]; Magnesium chelatase, subunit ChlI [PF01078.23, score=20.7]} {Human: ENSG00000073969, NSF, N-ethylmaleimide sensitive factor, vesicle fusing ATPase, [RH, Score=759, Expect=0.0]; ENSG00000278174, NSF, N-ethylmaleimide sensitive factor, vesicle fusing ATPase, [RH, Score=759, Expect=0.0]; ENSG00000276262, NSF, N-ethylmaleimide sensitive factor, vesicle fusing ATPase, [RH, Score=759, Expect=0.0]} {Mouse: ENSMUSG00000034187, Nsf, N-ethylmaleimide sensitive fusion protein, [RH, Score=756, Expect=0.0]} {Dmel: FBgn0266464, Nsf2, N-ethylmaleimide-sensitive factor 2, [RH, Score=816, Expect=0.0]} {Celegans: WBGene00003818, nsf-1, Vesicle-fusing ATPase, [RH, Score=676, Expect=0.0]} {Smed: dd_Smed_v6_3364_0_1, dd_Smed_v6_3364_0_1, [RH, Score=631, Expect=0.0]} {RNA1509_35440} {RNA1310_7474} {RNA815_4714}

Mlig455_047990 {REF} {Length: 3208} {TRANSSPLICED} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=168.7]; AAA+ lid domain [PF17862.3, score=37.8]; THAP domain [PF05485.14, score=35.8]; AAA ATPase domain [PF13191.8, score=33.6]; Cell division protein 48 (CDC48), N-terminal domain [PF02359.20, score=33.2]; AAA domain [PF13401.8, score=28.4]; AAA domain [PF13173.8, score=28.3]; TIP49 P-loop domain [PF06068.15, score=27.9]; NACHT domain [PF05729.14, score=25.9]; AAA domain (dynein-related subfamily) [PF07728.16, score=25.4]; AAA domain (Cdc48 subfamily) [PF07724.16, score=24.9]; AAA domain [PF13238.8, score=24.7]; AAA domain [PF13671.8, score=22.1]; Threonylcarbamoyl adenosine biosynthesis protein TsaE [PF02367.19, score=21.8]; Cell division protein 48 (CDC48), domain 2 [PF02933.19, score=21.5]; RNA helicase [PF00910.24, score=21.3]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=21.0]; Magnesium chelatase, subunit ChlI [PF01078.23, score=20.0]; ATPase domain predominantly from Archaea [PF01637.20, score=19.8]} {Human: ENSG00000276262, NSF, N-ethylmaleimide sensitive factor, vesicle fusing ATPase, [RH, Score=760, Expect=0.0]; ENSG00000278174, NSF, N-ethylmaleimide sensitive factor, vesicle fusing ATPase, [RH, Score=760, Expect=0.0]; ENSG00000073969, NSF, N-ethylmaleimide sensitive factor, vesicle fusing ATPase, [RH, Score=760, Expect=0.0]} {Mouse: ENSMUSG00000034187, Nsf, N-ethylmaleimide sensitive fusion protein, [RH, Score=756, Expect=0.0]} {Dmel: FBgn0266464, Nsf2, N-ethylmaleimide-sensitive factor 2, [RH, Score=818, Expect=0.0]} {Celegans: WBGene00003818, nsf-1, Vesicle-fusing ATPase, [RH, Score=677, Expect=0.0]} {Smed: dd_Smed_v6_3364_0_1, dd_Smed_v6_3364_0_1, [RH, Score=630, Expect=0.0]} {RNA1509_35440} {RNA1310_7474} {RNA815_4714}
3. MligTC455_09060 276 5.75 Mlig455_009276

Neo: -

Age: -

Region-enriched R5: 1.044/0.04246

 ERCC3 0.951 - - - - - 0.951 Mlig455_009276 {REF} {Length: 4027} {TRANSSPLICED} {Pfam: ERCC3/RAD25/XPB C-terminal helicase [PF16203.7, score=389.1]; Helicase conserved C-terminal domain [PF13625.8, score=116.7]; Type III restriction enzyme, res subunit [PF04851.17, score=62.2]; Helicase conserved C-terminal domain [PF00271.33, score=39.5]; SNF2-related domain [PF00176.25, score=25.2]; P-loop containing NTP hydrolase pore-1 [PF13872.8, score=19.2]} {Human: ENSG00000163161, ERCC3, ERCC excision repair 3, TFIIH core complex helicase subunit, [RH, Score=1009, Expect=0.0]} {Mouse: ENSMUSG00000024382, Ercc3, excision repair cross-complementing rodent repair deficiency, complementation group 3, [RH, Score=1018, Expect=0.0]} {Dmel: FBgn0001179, hay, haywire, [RH, Score=994, Expect=0.0]} {Celegans: WBGene00013441, xpb-1, XPB (Xeroderma Pigmentosum complementation group B) related, [RH, Score=930, Expect=0.0]} {Smed: dd_Smed_v6_9996_0_1, dd_Smed_v6_9996_0_1, [RH, Score=764, Expect=0.0]} {RNA1509_12216} {RNA1310_7003} {RNA815_3026.1}
4. MligTC455_33271 455 9.47 Mlig455_062589

Neo: -

Age: -

 SLC35A2 0.95 - - 0.950 - - - Mlig455_062589 {REF} {Length: 5859} {TRANSSPLICED} {Pfam: Nucleotide-sugar transporter [PF04142.17, score=381.6]; EamA-like transporter family [PF00892.22, score=29.7]; UAA transporter family [PF08449.13, score=27.9]} {Human: ENSG00000102100, SLC35A2, solute carrier family 35 member A2, [RH, Score=287, Expect=2e-93]; ENSG00000164414, SLC35A1, solute carrier family 35 member A1, [RH, Score=284, Expect=2e-93]} {Mouse: ENSMUSG00000031156, Slc35a2, solute carrier family 35 (UDP-galactose transporter), member A2, [RH, Score=284, Expect=6e-93]; ENSMUSG00000028293, Slc35a1, solute carrier family 35 (CMP-sialic acid transporter), member 1, [RH, Score=277, Expect=4e-91]} {Dmel: FBgn0024994, Csat, [RH, Score=303, Expect=4e-101]} {Celegans: WBGene00005153, srf-3, UDP-galactose/UDP-N-acetylglucosamine transporter srf-3, [RH, Score=241, Expect=9e-77]} {Smed: dd_Smed_v6_4691_0_1, dd_Smed_v6_4691_0_1, [RH, Score=324, Expect=9e-110]} {RNA1509_20257, RNA1509_31911, RNA1509_54503, RNA1509_56118} {RNA1310_27382, RNA1509_31911, RNA1509_54503, RNA1509_56118} {RNA1509_31911, RNA1509_54503, RNA1509_56118, RNA815_5729}

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