Data search
Results for MligTC455_09060
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_09060 | 276 | 5.75 | Mlig455_009276 | Neo: - Age: - Region-enriched R5: 1.044/0.04246 |
ERCC3 | Mlig455_009276 {REF} {Length: 4027} {TRANSSPLICED} {Pfam: ERCC3/RAD25/XPB C-terminal helicase [PF16203.7, score=389.1]; Helicase conserved C-terminal domain [PF13625.8, score=116.7]; Type III restriction enzyme, res subunit [PF04851.17, score=62.2]; Helicase conserved C-terminal domain [PF00271.33, score=39.5]; SNF2-related domain [PF00176.25, score=25.2]; P-loop containing NTP hydrolase pore-1 [PF13872.8, score=19.2]} {Human: ENSG00000163161, ERCC3, ERCC excision repair 3, TFIIH core complex helicase subunit, [RH, Score=1009, Expect=0.0]} {Mouse: ENSMUSG00000024382, Ercc3, excision repair cross-complementing rodent repair deficiency, complementation group 3, [RH, Score=1018, Expect=0.0]} {Dmel: FBgn0001179, hay, haywire, [RH, Score=994, Expect=0.0]} {Celegans: WBGene00013441, xpb-1, XPB (Xeroderma Pigmentosum complementation group B) related, [RH, Score=930, Expect=0.0]} {Smed: dd_Smed_v6_9996_0_1, dd_Smed_v6_9996_0_1, [RH, Score=764, Expect=0.0]} {RNA1509_12216} {RNA1310_7003} {RNA815_3026.1} |
Cumulative graph for MligTC455_09060
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -1.205 | 3.096 | 0.43034 | 1.00000 | |
| RegionR2 | 1.033 | 3.096 | 0.10174 | 0.39268 | |
| RegionR3 | -0.095 | 3.096 | 0.85085 | 1.00000 | |
| RegionR4 | -0.26 | 3.096 | 0.65658 | 0.95717 | |
| RegionR5 | 1.044 | 3.096 | 0.00654 | 0.04246 | |
| RegionR6 | 0.057 | 3.096 | 0.90769 | 1.00000 | |
| RegionR7 | -1.424 | 3.096 | 0.12571 | 0.66803 | |
| RegionR8 | 0.85 | 3.096 | 0.29962 | 0.93010 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -4.087 | 3.096 | 0.49833 | 1.00000 | |
| RegenerationR2 | 0.345 | 3.096 | 0.45091 | 0.84732 | |
| RegenerationR3 | 0.555 | 3.096 | 0.30625 | 0.73722 | |
| RegenerationR4 | 0.277 | 3.096 | 0.60256 | 0.91424 | |
| RegenerationR5 | -0.796 | 3.096 | 0.07040 | 0.41667 | |
| RegenerationR6 | 0.405 | 3.096 | 0.47953 | 0.79152 | |
| RegenerationBL | 0.466 | 3.096 | 0.57849 | 0.93084 | |
| RegenerationTP | 0.57 | 3.096 | 0.51842 | 0.91321 |
Genes with expression patterns similar to MligTC455_09060
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_09060 | 276 | 5.75 | Mlig455_009276 | Neo: - Age: - Region-enriched R5: 1.044/0.04246 |
ERCC3 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_009276 {REF} {Length: 4027} {TRANSSPLICED} {Pfam: ERCC3/RAD25/XPB C-terminal helicase [PF16203.7, score=389.1]; Helicase conserved C-terminal domain [PF13625.8, score=116.7]; Type III restriction enzyme, res subunit [PF04851.17, score=62.2]; Helicase conserved C-terminal domain [PF00271.33, score=39.5]; SNF2-related domain [PF00176.25, score=25.2]; P-loop containing NTP hydrolase pore-1 [PF13872.8, score=19.2]} {Human: ENSG00000163161, ERCC3, ERCC excision repair 3, TFIIH core complex helicase subunit, [RH, Score=1009, Expect=0.0]} {Mouse: ENSMUSG00000024382, Ercc3, excision repair cross-complementing rodent repair deficiency, complementation group 3, [RH, Score=1018, Expect=0.0]} {Dmel: FBgn0001179, hay, haywire, [RH, Score=994, Expect=0.0]} {Celegans: WBGene00013441, xpb-1, XPB (Xeroderma Pigmentosum complementation group B) related, [RH, Score=930, Expect=0.0]} {Smed: dd_Smed_v6_9996_0_1, dd_Smed_v6_9996_0_1, [RH, Score=764, Expect=0.0]} {RNA1509_12216} {RNA1310_7003} {RNA815_3026.1} |
| 2. | MligTC455_09061 | 310 | 6.46 | Mlig455_037032 | Neo: Irradiation Age: Down-Up-Down, logFC(26M/2M)=-0.300 Region-enriched R5: 1.194/0.01029 |
ERCC3 | 5.698 | 0.989 | 0.993 | 0.983 | 0.885 | 0.925 | 0.923 | Mlig455_037032 {REF} {Length: 6165} {Pfam: ERCC3/RAD25/XPB C-terminal helicase [PF16203.7, score=389.0]; Helicase conserved C-terminal domain [PF13625.8, score=116.7]; Type III restriction enzyme, res subunit [PF04851.17, score=62.2]; Helicase conserved C-terminal domain [PF00271.33, score=39.4]; SNF2-related domain [PF00176.25, score=25.1]; P-loop containing NTP hydrolase pore-1 [PF13872.8, score=19.2]} {Human: ENSG00000163161, ERCC3, ERCC excision repair 3, TFIIH core complex helicase subunit, [RH, Score=1009, Expect=0.0]} {Mouse: ENSMUSG00000024382, Ercc3, excision repair cross-complementing rodent repair deficiency, complementation group 3, [RH, Score=1019, Expect=0.0]} {Dmel: FBgn0001179, hay, haywire, [RH, Score=991, Expect=0.0]} {Celegans: WBGene00013441, xpb-1, XPB (Xeroderma Pigmentosum complementation group B) related, [RH, Score=928, Expect=0.0]} {Smed: dd_Smed_v6_9996_0_1, dd_Smed_v6_9996_0_1, [RH, Score=765, Expect=0.0]} {RNA1509_12216, RNA1509_39254, RNA1509_57341} {RNA1310_7003, RNA1509_12216, RNA1509_39254, RNA1509_57341} {RNA1509_12216, RNA1509_39254, RNA1509_57341, RNA815_3026.1} |
| 3. | MligTC455_28079 | 260 | 5.41 | Mlig455_042085 | Neo: - Age: Down-Up-Down Region-enriched R5: 2.353/0.00183 |
TRAM1 | 2.483 | 0.742 | 0.783 | 0.958 | - | - | - | Mlig455_042085 {REF} {Length: 3140} {Pfam: TLC domain [PF03798.18, score=67.5]; TRAM1-like protein [PF08390.13, score=60.2]} {Human: ENSG00000067167, TRAM1, translocation associated membrane protein 1, [Score=268, Expect=3e-86]} {Mouse: ENSMUSG00000025935, Tram1, translocating chain-associating membrane protein 1, [Score=267, Expect=4e-86]} {Dmel: FBgn0040340, TRAM, [Score=205, Expect=3e-62]} {Celegans: WBGene00007696, tram-1, Translocating chain-associated membrane protein, [Score=203, Expect=2e-61]} {Smed: dd_Smed_v6_1740_0_1, dd_Smed_v6_1740_0_1, [Score=358, Expect=6e-122]} {RNA1509_24797} {RNA1310_9998.1, RNA1509_24797} {RNA1509_24797, RNA815_4029.1} |
| 4. | MligTC455_21397 | 386 | 8.05 | Mlig455_052980 | Neo: - Age: - |
TAF4 | 1.796 | 0.836 | - | 0.960 | - | - | - | Mlig455_052980 {REF} {Length: 4362} {TRANSSPLICED} {Pfam: Transcription initiation factor TFIID component TAF4 family [PF05236.16, score=129.3]; NHR1 homology to TAF [PF07531.16, score=42.0]} {Human: ENSG00000130699, TAF4, TATA-box binding protein associated factor 4, [RH, Score=144, Expect=1e-35]; ENSG00000280529, TAF4, TATA-box binding protein associated factor 4, [RH, Score=142, Expect=2e-36]} {Mouse: ENSMUSG00000039117, Taf4, TATA-box binding protein associated factor 4, [RH, Score=145, Expect=6e-36]} {Dmel: FBgn0010280, Taf4, TBP-associated factor 4, [Score=110, Expect=7e-25]} {Celegans: WBGene00006385, taf-4, TAF (TBP-associated transcription factor) family, [Score=67.8, Expect=8e-12]} {Smed: dd_Smed_v6_9560_0_1, dd_Smed_v6_9560_0_1, [Score=87.8, Expect=2e-18]} {RNA1509_12245, RNA1509_33838, RNA1509_55665} {RNA1310_5227, RNA1509_12245, RNA1509_33838, RNA1509_55665} {RNA1509_12245, RNA1509_33838, RNA1509_55665, RNA815_18740} |
| 5. | MligTC455_21396 | 337 | 7.03 | Mlig455_036844 | Neo: - Age: Down-Up-Up |
TAF4 | 1.791 | 0.828 | - | 0.963 | - | - | - | Mlig455_036844 {REF} {Length: 3934} {TRANSSPLICED} {Pfam: Transcription initiation factor TFIID component TAF4 family [PF05236.16, score=129.4]; NHR1 homology to TAF [PF07531.16, score=41.8]} {Human: ENSG00000130699, TAF4, TATA-box binding protein associated factor 4, [RH, Score=143, Expect=2e-35]; ENSG00000141384, TAF4B, TATA-box binding protein associated factor 4b, [RH, Score=142, Expect=4e-35]; ENSG00000280529, TAF4, TATA-box binding protein associated factor 4, [RH, Score=142, Expect=2e-36]} {Mouse: ENSMUSG00000039117, Taf4, TATA-box binding protein associated factor 4, [RH, Score=144, Expect=1e-35]} {Dmel: FBgn0010280, Taf4, TBP-associated factor 4, [RH, Score=111, Expect=4e-25]} {Celegans: WBGene00006385, taf-4, TAF (TBP-associated transcription factor) family, [RH, Score=67.8, Expect=9e-12]} {Smed: dd_Smed_v6_9560_0_1, dd_Smed_v6_9560_0_1, [RH, Score=90.1, Expect=5e-19]} {RNA1509_12245} {RNA1310_5227} {RNA815_18740} |
| 6. | MligTC455_11715 | 52 | 1.08 | Mlig455_012409 | Neo: - Age: - |
GRM3 | 1.717 | 0.763 | - | 0.954 | - | - | - | Mlig455_012409 {REF} {Length: 3624} {Pfam: Receptor family ligand binding region [PF01094.30, score=212.0]; 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=194.1]; Nine Cysteines Domain of family 3 GPCR [PF07562.16, score=32.7]} {Human: ENSG00000198822, GRM3, glutamate metabotropic receptor 3, [RH, Score=676, Expect=0.0]} {Mouse: ENSMUSG00000003974, Grm3, glutamate receptor, metabotropic 3, [RH, Score=674, Expect=0.0]} {Dmel: FBgn0019985, mGluR, metabotropic Glutamate Receptor, [Score=676, Expect=0.0]} {Celegans: WBGene00003232, mgl-1, Probable metabotropic glutamate receptor mgl-1, [Score=560, Expect=0.0]} {Smed: dd_Smed_v6_15419_0_1, dd_Smed_v6_15419_0_1, [Score=745, Expect=0.0]} {RNA1509_46373} {RNA1310_21236} {RNA815_19897} |
| 7. | MligTC455_52111 | 120 | 2.5 | Mlig455_036893 | Neo: - Age: - Region-enriched R5: 2.209/0.02779 |
1.688 | 0.734 | - | 0.954 | - | - | - | Mlig455_036893 {REF} {Length: 1778} {RNA1310_41662.1} {RNA815_33206} | |
| 8. | MligTC455_19284 | 101 | 2.1 | Mlig455_019163 | Neo: Irradiation Age: logFC(26M/2M)=0.241 Region-enriched R2: 5.389/0.00432 |
0.98 | - | - | 0.980 | - | - | - | Mlig455_019163 {REF} {Length: 4383} {TRANSSPLICED} {RNA1509_7580} {RNA1310_5670, RNA1509_7580} {RNA1509_7580, RNA815_1187.1} | |
| 9. | MligTC455_27962 | 528 | 11 | Mlig455_033837 | Neo: Irradiation Age: Up-Down-Down |
MYO18A | 0.972 | - | - | - | - | 0.972 | - | Mlig455_033837 {REF} {Length: 7232} {TRANSSPLICED} {Pfam: Myosin head (motor domain) [PF00063.23, score=303.8]; PDZ domain [PF17820.3, score=26.5]; PDZ domain [PF00595.26, score=25.5]; Myosin tail [PF01576.21, score=20.3]} {Human: ENSG00000196535, MYO18A, myosin XVIIIA, [RH, Score=877, Expect=0.0]} {Mouse: ENSMUSG00000000631, Myo18a, myosin XVIIIA, [RH, Score=873, Expect=0.0]} {Dmel: FBgn0026059, Mhcl, Myosin heavy chain-like, [RH, Score=881, Expect=0.0]} {Celegans: WBGene00003776, nmy-1, Non-muscle MYosin, [Score=365, Expect=5e-102]} {Smed: dd_Smed_v6_6277_0_1, dd_Smed_v6_6277_0_1, [RH, Score=796, Expect=0.0]} {RNA1509_2680} {RNA1310_390} {RNA815_386} |
| 10. | MligTC455_28093 | 350 | 7.3 | Mlig455_049818 | Neo: - Age: - |
ZNF208 | 0.963 | - | - | 0.963 | - | - | - | Mlig455_049818 {REF} {Length: 5159} {TRANSSPLICED} {tRNA: Val(CAC),pseudo, score=24.2} {Pfam: Zinc-finger double domain [PF13465.8, score=455.4]; Zinc finger, C2H2 type [PF00096.28, score=334.6]; C2H2-type zinc finger [PF13894.8, score=244.2]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=137.9]; Zinc-finger of C2H2 type [PF12874.9, score=118.0]; C2H2-type zinc finger [PF13912.8, score=35.5]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=26.4]; C2H2-type zinc-finger domain [PF13909.8, score=21.0]} {Human: ENSG00000160321, ZNF208, zinc finger protein 208, [Score=544, Expect=1e-172]; ENSG00000167232, ZNF91, zinc finger protein 91, [Score=529, Expect=5e-168]} {Mouse: ENSMUSG00000021510, Zfp729a, zinc finger protein 729a, [Score=488, Expect=5e-155]} {Dmel: FBgn0020309, crol, crooked legs, [Score=255, Expect=9e-71]} {Celegans: WBGene00021931, Y55F3AM.14, [Score=177, Expect=4e-46]} {Smed: dd_Smed_v6_8871_0_1, dd_Smed_v6_8871_0_1, [Score=147, Expect=2e-35]} {RNA1509_11635} {RNA1310_6381} {RNA815_979} |
| 11. | MligTC455_34291 | 254 | 5.29 | Mlig455_028897 | Neo: Irradiation Age: logFC(26M/2M)=0.396 Region-enriched R5: 1.944/0.00597 |
0.955 | - | - | 0.955 | - | - | - | Mlig455_028897 {REF} {Length: 3012} {TRANSSPLICED} {Pfam: YjeF-related protein N-terminus [PF03853.17, score=41.4]} {RNA1509_26437, RNA1509_34546, RNA1509_40238} {RNA1310_13030, RNA1509_26437, RNA1509_34546, RNA1509_40238} {RNA1509_26437, RNA1509_34546, RNA1509_40238, RNA815_6218} | |
| 12. | MligTC455_13396 | 351 | 7.3 | Mlig455_004986 | Neo: - Age: - Region-enriched R5: 1.511/0.00084 |
0.954 | - | - | 0.954 | - | - | - | Mlig455_004986 {REF} {Length: 799} {NoTransDecoderORF} {RNA1509_31555, RNA1509_50636} {RNA1310_44877, RNA1509_31555} {RNA1509_31555, RNA815_24950} | |
| 13. | MligTC455_13397 | 328 | 6.83 | Mlig455_005290 | Neo: - Age: - Region-enriched R5: 1.444/0.00333 |
EXTL3 | 0.951 | - | - | 0.951 | - | - | - | Mlig455_005290 {REF} {Length: 4329} {TRANSSPLICED} {Pfam: Glycosyl transferase family 64 domain [PF09258.12, score=287.7]; Exostosin family [PF03016.17, score=37.3]} {Human: ENSG00000012232, EXTL3, exostosin like glycosyltransferase 3, [RH, Score=481, Expect=4e-156]} {Mouse: ENSMUSG00000021978, Extl3, exostoses (multiple)-like 3, [RH, Score=478, Expect=4e-155]} {Dmel: FBgn0027535, botv, brother of tout-velu, [RH, Score=479, Expect=9e-155]} {Celegans: WBGene00004361, rib-2, Exostosin-2 homolog, [RH, Score=399, Expect=5e-126]} {Smed: dd_Smed_v6_14625_0_1, dd_Smed_v6_14625_0_1, [RH, Score=441, Expect=4e-142]} {RNA1509_24376} {RNA1310_18189, RNA1509_24376} {RNA1509_24376, RNA815_24950} |
| 14. | MligTC455_54161 | 250 | 5.22 | Mlig455_010248 | Neo: - Age: - |
0.951 | - | - | - | - | - | 0.951 | Mlig455_010248 {REF} {Length: 1335} {NoTransDecoderORF} {RNA1310_42356} {RNA815_22904} |
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