M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_55285

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_55285 13 0.27 Mlig455_036448

Neo: -

Age: -

 Mlig455_036448 {REF} {Length: 221} {NoTransDecoderORF} {RNA1310_34255}

Cumulative graph for MligTC455_55285

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.246 0.712 0.99967 1.00000
RegionR2 -0.154 0.712 1.00000 1.00000
RegionR3 0.142 0.712 0.99992 1.00000
RegionR4 0.048 0.712 0.99979 1.00000
RegionR5 0.175 0.712 0.99972 1.00000
RegionR6 -0.068 0.712 0.99986 1.00000
RegionR7 -0.08 0.712 0.99997 1.00000
RegionR8 0.183 0.712 0.99979 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.722 0.712 0.99996 1.00000
RegenerationR2 2.774 0.712 0.50971 0.87502
RegenerationR3 2.267 0.712 0.30104 0.73242
RegenerationR4 1.355 0.712 0.45219 0.84327
RegenerationR5 1.55 0.712 0.47288 0.84335
RegenerationR6 1.314 0.712 0.45106 0.77144
RegenerationBL 3.516 0.712 0.36982 0.73820
RegenerationTP -0.525 0.712 0.99991 1.00000


Genes with expression patterns similar to MligTC455_55285

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_55285 13 0.27 Mlig455_036448

Neo: -

Age: -

 2 - - - 1.000 1.000 - Mlig455_036448 {REF} {Length: 221} {NoTransDecoderORF} {RNA1310_34255}
2. MligTC455_10597 50 1.03 Mlig455_000567

Neo: -

Age: -

 GRIK3 0.966 - - - - 0.966 - Mlig455_000567 {REF} {Length: 3419} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=70.9]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=51.0]; Ligand-gated ion channel [PF00060.28, score=43.2]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=148, Expect=5e-36]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=145, Expect=3e-35]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=141, Expect=8e-34]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=146, Expect=1e-35]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=145, Expect=2e-35]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=144, Expect=8e-35]} {Dmel: FBgn0039916, Ekar, Eye-enriched kainate receptor, [Score=131, Expect=4e-31]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=134, Expect=4e-32]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=148, Expect=1e-36]} {RNA1509_59839} {RNA1310_4586, RNA1509_59839} {RNA1509_59839, RNA815_2154.1}
3. MligTC455_10600 44 0.91 Mlig455_000569

Neo: -

Age: -

 GRIK3 0.964 - - - - 0.964 - Mlig455_000569 {REF} {Length: 2818} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=74.0]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=55.9]; Ligand-gated ion channel [PF00060.28, score=42.5]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=146, Expect=2e-35]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=143, Expect=2e-34]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=141, Expect=5e-34]; ENSG00000105737, GRIK5, glutamate ionotropic receptor kainate type subunit 5, [Score=139, Expect=3e-33]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=145, Expect=3e-35]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=144, Expect=6e-35]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=141, Expect=6e-34]; ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=140, Expect=2e-33]; ENSMUSG00000003378, Grik5, glutamate receptor, ionotropic, kainate 5 (gamma 2), [Score=139, Expect=4e-33]} {Dmel: FBgn0026255, clumsy, [Score=132, Expect=4e-31]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=135, Expect=2e-32]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=155, Expect=6e-39]} {RNA1509_59839} {RNA1310_4586} {RNA815_2154.1}
4. MligTC455_10598 46 0.97 Mlig455_030367

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.975

 GRIK3 0.962 - - - - 0.962 - Mlig455_030367 {REF} {Length: 3072} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=74.5]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=38.8]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=97.4, Expect=2e-20]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=93.2, Expect=5e-19]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=92.8, Expect=6e-19]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=97.1, Expect=2e-20]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=95.9, Expect=6e-20]} {Dmel: FBgn0039916, Ekar, Eye-enriched kainate receptor, [Score=90.1, Expect=2e-18]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=88.2, Expect=8e-18]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=94.0, Expect=9e-20]} {RNA1509_59839} {RNA1310_4586} {RNA815_2154.1}
5. MligTC455_36411 162 3.38 Mlig455_065511

Neo: -

Age: logFC(26M/2M)=-0.508

 PLK2 0.952 - - - 0.952 - - Mlig455_065511 {REF} {Length: 2764} {Pfam: Protein kinase domain [PF00069.27, score=203.5]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=136.9]; Fungal protein kinase [PF17667.3, score=24.5]; Kinase-like [PF14531.8, score=20.1]} {Human: ENSG00000145632, PLK2, polo like kinase 2, [Score=185, Expect=3e-50]; ENSG00000173846, PLK3, polo like kinase 3, [Score=184, Expect=6e-50]} {Mouse: ENSMUSG00000028680, Plk3, polo like kinase 3, [Score=188, Expect=7e-52]; ENSMUSG00000021701, Plk2, polo like kinase 2, [Score=185, Expect=3e-50]} {Dmel: FBgn0003124, polo, [Score=187, Expect=8e-52]} {Celegans: WBGene00004042, plk-1, Serine/threonine-protein kinase plk-1, [Score=166, Expect=5e-44]} {Smed: dd_Smed_v6_35990_0_1, dd_Smed_v6_35990_0_1, [Score=183, Expect=1e-51]} {RNA1509_19899} {RNA1310_6459} {RNA815_3716}
6. MligTC455_44911 107 2.23 Mlig455_018300

Neo: -

Age: Down-Up-Down

 0.95 - - - - 0.950 - Mlig455_018300 {REF} {Length: 2150} {NoTransDecoderORF} {RNA1509_50075, RNA1509_55433} {RNA1310_65941, RNA1509_55433} {RNA1509_55433, RNA815_15646}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA