TomoSeq data search

Data search

Results for MligTC455_10598

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_10598	46	0.97	Mlig455_030367	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.975	GRIK3	Mlig455_030367 {REF} {Length: 3072} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=74.5]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=38.8]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=97.4, Expect=2e-20]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=93.2, Expect=5e-19]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=92.8, Expect=6e-19]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=97.1, Expect=2e-20]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=95.9, Expect=6e-20]} {Dmel: FBgn0039916, Ekar, Eye-enriched kainate receptor, [Score=90.1, Expect=2e-18]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=88.2, Expect=8e-18]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=94.0, Expect=9e-20]} {RNA1509_59839} {RNA1310_4586} {RNA815_2154.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_10598

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-1.943	1.527	0.99965	1.00000
RegionR2	2.793	1.527	0.18217	0.53322
RegionR3	2.92	1.527	0.04624	0.37650
RegionR4	-1.796	1.527	0.97219	1.00000
RegionR5	2.902	1.527	0.01446	0.07615
RegionR6	-1.175	1.527	0.91317	1.00000
RegionR7	-2.151	1.527	0.99975	1.00000
RegionR8	-1.55	1.527	0.99978	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-1.04	1.527	0.99997	1.00000
RegenerationR2	-0.337	1.527	0.69043	0.95295
RegenerationR3	0.109	1.527	0.97937	1.00000
RegenerationR4	2.604	1.527	0.09702	0.48322
RegenerationR5	-0.14	1.527	0.83674	0.99986
RegenerationR6	0.327	1.527	0.80413	0.97941
RegenerationBL	-1.476	1.527	0.99974	1.00000
RegenerationTP	-0.681	1.527	0.99991	1.00000

Genes with expression patterns similar to MligTC455_10598

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_10598	46	0.97	Mlig455_030367	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.975	GRIK3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_030367 {REF} {Length: 3072} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=74.5]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=38.8]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=97.4, Expect=2e-20]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=93.2, Expect=5e-19]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=92.8, Expect=6e-19]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=97.1, Expect=2e-20]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=95.9, Expect=6e-20]} {Dmel: FBgn0039916, Ekar, Eye-enriched kainate receptor, [Score=90.1, Expect=2e-18]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=88.2, Expect=8e-18]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=94.0, Expect=9e-20]} {RNA1509_59839} {RNA1310_4586} {RNA815_2154.1}
2.	MligTC455_10597	50	1.03	Mlig455_000567	Neo: - Age: -	GRIK3	5.824	1.000	0.885	1.000	0.964	0.988	0.987	Mlig455_000567 {REF} {Length: 3419} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=70.9]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=51.0]; Ligand-gated ion channel [PF00060.28, score=43.2]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=148, Expect=5e-36]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=145, Expect=3e-35]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=141, Expect=8e-34]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=146, Expect=1e-35]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=145, Expect=2e-35]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=144, Expect=8e-35]} {Dmel: FBgn0039916, Ekar, Eye-enriched kainate receptor, [Score=131, Expect=4e-31]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=134, Expect=4e-32]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=148, Expect=1e-36]} {RNA1509_59839} {RNA1310_4586, RNA1509_59839} {RNA1509_59839, RNA815_2154.1}
3.	MligTC455_10600	44	0.91	Mlig455_000569	Neo: - Age: -	GRIK3	5.755	0.991	0.886	1.000	0.954	0.993	0.931	Mlig455_000569 {REF} {Length: 2818} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=74.0]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=55.9]; Ligand-gated ion channel [PF00060.28, score=42.5]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=146, Expect=2e-35]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=143, Expect=2e-34]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=141, Expect=5e-34]; ENSG00000105737, GRIK5, glutamate ionotropic receptor kainate type subunit 5, [Score=139, Expect=3e-33]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=145, Expect=3e-35]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=144, Expect=6e-35]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=141, Expect=6e-34]; ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=140, Expect=2e-33]; ENSMUSG00000003378, Grik5, glutamate receptor, ionotropic, kainate 5 (gamma 2), [Score=139, Expect=4e-33]} {Dmel: FBgn0026255, clumsy, [Score=132, Expect=4e-31]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=135, Expect=2e-32]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=155, Expect=6e-39]} {RNA1509_59839} {RNA1310_4586} {RNA815_2154.1}
4.	MligTC455_28284	687	14.32	Mlig455_033754	Neo: Irradiation Age: Down-Up-Down	ALG13	1.789	-	-	-	0.960	0.829	-	Mlig455_033754 {REF} {Length: 3417} {Human: ENSG00000101901, ALG13, ALG13, UDP-N-acetylglucosaminyltransferase subunit, [RH, Score=94.0, Expect=3e-19]} {Mouse: ENSMUSG00000036990, Otud4, OTU domain containing 4, [Score=77.0, Expect=4e-14]} {RNA1509_19781} {RNA1310_7225.1} {RNA815_3492}
5.	MligTC455_28450	246	5.13	Mlig455_041204	Neo: - Age: -		1.777	-	-	-	0.955	0.822	-	Mlig455_041204 {REF} {Length: 1413} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=24.4]} {RNA1509_37153} {RNA1310_17647} {RNA815_17449}
6.	MligTC455_13845	25	0.52	Mlig455_030364, Mlig455_030411	Neo: - Age: -	GRIK1, GRIK3	1.776	-	-	-	-	0.962	0.814	Mlig455_030364 {REF} {Length: 5127} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=78.2]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=56.4]; Ligand-gated ion channel [PF00060.28, score=42.3]} {Human: ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=150, Expect=1e-36]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=148, Expect=4e-36]; ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=147, Expect=9e-36]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=146, Expect=1e-35]; ENSG00000152578, GRIA4, glutamate ionotropic receptor AMPA type subunit 4, [Score=146, Expect=1e-35]} {Mouse: ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=150, Expect=8e-37]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=148, Expect=4e-36]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=147, Expect=5e-36]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=147, Expect=5e-36]; ENSMUSG00000025892, Gria4, glutamate receptor, ionotropic, AMPA4 (alpha 4), [Score=146, Expect=1e-35]} {Dmel: FBgn0038837, CG3822, [Score=150, Expect=6e-37]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=129, Expect=2e-30]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=171, Expect=1e-43]} {RNA1509_59839} {RNA1310_10552} {RNA815_2154.1} Mlig455_030411 {REF} {Length: 1792} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=78.4]; Ligand-gated ion channel [PF00060.28, score=42.7]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=35.7]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=132, Expect=2e-31]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=126, Expect=2e-29]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=132, Expect=2e-31]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=127, Expect=5e-30]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=126, Expect=1e-29]} {Dmel: FBgn0038837, CG3822, [Score=122, Expect=1e-28]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=115, Expect=2e-26]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=137, Expect=2e-33]} {RNA1509_59839} {RNA1310_10552} {RNA815_46189}
7.	MligTC455_44911	107	2.23	Mlig455_018300	Neo: - Age: Down-Up-Down		1.725	-	-	0.749	-	0.976	-	Mlig455_018300 {REF} {Length: 2150} {NoTransDecoderORF} {RNA1509_50075, RNA1509_55433} {RNA1310_65941, RNA1509_55433} {RNA1509_55433, RNA815_15646}
8.	MligTC455_52515	439	9.14	Mlig455_023709	Neo: - Age: logFC(26M/2M)=-0.641 Region-enriched R7: 2.241/0.01965	TPH1	1.706	-	-	-	0.973	0.733	-	Mlig455_023709 {REF} {Length: 2707} {Pfam: Biopterin-dependent aromatic amino acid hydroxylase [PF00351.23, score=557.1]; ACT domain [PF01842.27, score=19.1]} {Human: ENSG00000129167, TPH1, tryptophan hydroxylase 1, [RH, Score=529, Expect=0.0]; ENSG00000139287, TPH2, tryptophan hydroxylase 2, [RH, Score=521, Expect=2e-180]} {Mouse: ENSMUSG00000040046, Tph1, tryptophan hydroxylase 1, [RH, Score=525, Expect=0.0]; ENSMUSG00000006764, Tph2, tryptophan hydroxylase 2, [RH, Score=521, Expect=1e-180]} {Dmel: FBgn0035187, Trh, trachealess, [RH, Score=492, Expect=1e-168]} {Celegans: WBGene00006600, tph-1, TryPtophan Hydroxylase; Tryptophan hydroxylase, [RH, Score=455, Expect=2e-154]} {Smed: dd_Smed_v6_8392_0_1, dd_Smed_v6_8392_0_1, [RH, Score=635, Expect=0.0]} {RNA1509_15298} {RNA1310_3347.1} {RNA815_3745}
9.	MligTC455_45389	18	0.37	Mlig455_040503, Mlig455_057939	Neo: - Age: -		0.98	-	-	0.980	-	-	-	Mlig455_040503 {REF} {Length: 804} {RNA1509_26883} {RNA1310_27896} {RNA815_42909} Mlig455_057939 {REF} {Length: 1147} {RNA1509_26883} {RNA1310_27896} {RNA815_42909}
10.	MligTC455_00559	9	0.18	Mlig455_021986	Neo: - Age: -		0.966	-	-	-	-	0.966	-	Mlig455_021986 {REF} {Length: 21} {NoTransDecoderORF}
11.	MligTC455_36528	698	14.54	Mlig455_010175	Neo: - Age: -	PMPCB	0.966	-	-	-	0.966	-	-	Mlig455_010175 {REF} {Length: 4517} {Pfam: Insulinase (Peptidase family M16) [PF00675.22, score=174.7]; Peptidase M16 inactive domain [PF05193.23, score=107.7]} {Human: ENSG00000105819, PMPCB, peptidase, mitochondrial processing beta subunit, [RH, Score=504, Expect=5e-176]} {Mouse: ENSMUSG00000029017, Pmpcb, peptidase (mitochondrial processing) beta, [RH, Score=494, Expect=2e-172]} {Dmel: FBgn0038271, UQCR-C1, Ubiquinol-cytochrome c reductase core protein 1, [RH, Score=493, Expect=2e-172]} {Celegans: WBGene00013880, mppb-1, Mitochondrial Processing Peptidase Beta, [RH, Score=381, Expect=9e-129]} {Smed: dd_Smed_v6_7914_0_1, dd_Smed_v6_7914_0_1, [RH, Score=426, Expect=1e-146]} {RNA1509_10097, RNA1509_18919, RNA1509_28355, RNA1509_3270, RNA1509_46441} {RNA1310_8781.1, RNA1509_10097, RNA1509_18919, RNA1509_28355, RNA1509_3270, RNA1509_46441} {RNA1509_10097, RNA1509_18919, RNA1509_28355, RNA1509_3270, RNA1509_46441, RNA815_3008.1}
12.	MligTC455_41542	144	2.99	Mlig455_017263	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.389	MYT1	0.964	-	-	-	0.964	-	-	Mlig455_017263 {REF} {Length: 3726} {Pfam: Zinc finger, C2HC type [PF01530.20, score=165.5]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=19.3]} {Human: ENSG00000276876, MYT1, myelin transcription factor 1, [RH, Score=133, Expect=5e-31]; ENSG00000196132, MYT1, myelin transcription factor 1, [RH, Score=133, Expect=5e-31]; ENSG00000275018, AL121581.1, novel transcript, [RH, Score=132, Expect=4e-31]; ENSG00000147488, ST18, ST18, C2H2C-type zinc finger, [RH, Score=127, Expect=2e-29]} {Mouse: ENSMUSG00000010505, Myt1, myelin transcription factor 1, [RH, Score=132, Expect=6e-31]; ENSMUSG00000033740, St18, suppression of tumorigenicity 18, [RH, Score=127, Expect=2e-29]} {Dmel: FBgn0263772, CG43689, [RH, Score=100, Expect=5e-21]} {Celegans: WBGene00009939, ztf-11, Zinc finger putative Transcription Factor family, [Score=112, Expect=7e-26]} {Smed: dd_Smed_v6_18107_0_1, dd_Smed_v6_18107_0_1, [RH, Score=144, Expect=1e-37]} {RNA1310_62112} {RNA815_43721.1}
13.	MligTC455_04485	19	0.39	Mlig455_000247	Neo: - Age: -	KIF26A	0.962	-	-	-	0.962	-	-	Mlig455_000247 {REF} {Length: 4872} {Pfam: Kinesin motor domain [PF00225.25, score=100.1]} {Human: ENSG00000066735, KIF26A, kinesin family member 26A, [Score=253, Expect=3e-68]} {Mouse: ENSMUSG00000021294, Kif26a, kinesin family member 26A, [Score=281, Expect=3e-77]} {Dmel: FBgn0031955, CG14535, [Score=169, Expect=3e-42]} {Celegans: WBGene00006874, vab-8, Kinesin-like protein vab-8, [Score=118, Expect=9e-27]} {Smed: dd_Smed_v6_13562_0_2, dd_Smed_v6_13562_0_2, [Score=286, Expect=3e-79]} {RNA1509_37690} {RNA1310_5463} {RNA815_17479}
14.	MligTC455_55285	13	0.27	Mlig455_036448	Neo: - Age: -		0.962	-	-	-	-	0.962	-	Mlig455_036448 {REF} {Length: 221} {NoTransDecoderORF} {RNA1310_34255}
15.	MligTC455_10036	45	0.93	Mlig455_058001	Neo: - Age: -		0.961	-	-	-	-	0.961	-	Mlig455_058001 {REF} {Length: 634} {RNA1509_10017} {RNA1310_7841} {RNA815_6732.2}
16.	MligTC455_47075	126	2.63	Mlig455_033745	Neo: - Age: Up-Up-Down	PCDH1	0.961	-	-	0.961	-	-	-	Mlig455_033745 {REF} {Length: 4991} {Pfam: Cadherin domain [PF00028.19, score=181.7]; Cadherin-like [PF16184.7, score=27.8]; Cadherin-like [PF08266.14, score=24.6]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=203, Expect=2e-52]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=204, Expect=2e-53]} {Dmel: FBgn0284247, ds, dachsous, [Score=162, Expect=9e-40]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=149, Expect=4e-36]} {Smed: dd_Smed_v6_21207_0_1, dd_Smed_v6_21207_0_1, [Score=273, Expect=4e-76]} {RNA1509_26484} {RNA1310_13116, RNA1509_26484} {RNA1509_26484, RNA815_12525}
17.	MligTC455_30327	74	1.55	Mlig455_029571	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-0.854	TRAF5	0.96	-	-	-	-	-	0.960	Mlig455_029571 {REF} {Length: 3049} {Pfam: TRAF-type zinc finger [PF02176.20, score=45.6]} {Human: ENSG00000082512, TRAF5, TNF receptor associated factor 5, [Score=167, Expect=2e-44]} {Mouse: ENSMUSG00000111385, Traf5, TNF receptor-associated factor 5, [Score=159, Expect=4e-42]; ENSMUSG00000026637, Traf5, TNF receptor-associated factor 5, [Score=159, Expect=4e-42]} {Dmel: FBgn0026319, Traf4, TNF-receptor-associated factor 4, [Score=61.6, Expect=8e-10]} {Smed: dd_Smed_v6_1991_0_1, dd_Smed_v6_1991_0_1, [Score=140, Expect=3e-36]} {RNA1509_36404} {RNA1310_17613} {RNA815_4476.1}
18.	MligTC455_51290	43	0.9	Mlig455_031006	Neo: Int S/G2/M Age: -		0.96	-	-	-	-	0.960	-	Mlig455_031006 {REF} {Length: 2062} {TRANSSPLICED} {Pfam: Transmembrane family 220, helix [PF15071.8, score=75.0]; 7TM diverse intracellular signalling [PF07695.13, score=19.4]} {RNA1509_52987} {RNA1310_37259} {RNA815_33266.1}
19.	MligTC455_28650	110	2.28	Mlig455_048259	Neo: - Age: Down-Down-Up	RNF213	0.957	-	-	0.957	-	-	-	Mlig455_048259 {REF} {Length: 11132} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=26.0]; AAA domain (dynein-related subfamily) [PF07728.16, score=23.9]} {Human: ENSG00000173821, RNF213, ring finger protein 213, [Score=342, Expect=3e-93]} {Mouse: ENSMUSG00000070327, Rnf213, ring finger protein 213, [Score=337, Expect=6e-92]} {RNA1509_34013} {RNA1310_20549} {RNA815_15}
20.	MligTC455_09770	8	0.17	Mlig455_035598	Neo: - Age: -		0.955	-	-	-	0.955	-	-	Mlig455_035598 {REF} {Length: 864} {NoTransDecoderORF} {RNA1509_16998} {RNA1310_53111} {RNA815_21097}
21.	MligTC455_17373	189	3.93	Mlig455_062650	Neo: Int S/G2/M Age: Up-Down-Down, logFC(26M/2M)=-0.296		0.95	-	-	0.950	-	-	-	Mlig455_062650 {REF} {Length: 4801} {TRANSSPLICED} {Mouse: ENSMUSG00000073490, Ifi207, interferon activated gene 207, [Score=57.4, Expect=1e-07]} {RNA1509_41587} {RNA1310_6577.1} {RNA815_11491.2}