Data search
Results for MligTC455_55516
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_55516 | 6 | 0.12 | Mlig455_003582 | Neo: - Age: - |
Mlig455_003582 {REF} {Length: 213} {NoTransDecoderORF} |
Cumulative graph for MligTC455_55516
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | - | - | - | - | |
| RegionR2 | - | - | - | - | |
| RegionR3 | - | - | - | - | |
| RegionR4 | - | - | - | - | |
| RegionR5 | - | - | - | - | |
| RegionR6 | - | - | - | - | |
| RegionR7 | - | - | - | - | |
| RegionR8 | - | - | - | - |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | - | - | - | - | |
| RegenerationR2 | - | - | - | - | |
| RegenerationR3 | - | - | - | - | |
| RegenerationR4 | - | - | - | - | |
| RegenerationR5 | - | - | - | - | |
| RegenerationR6 | - | - | - | - | |
| RegenerationBL | - | - | - | - | |
| RegenerationTP | - | - | - | - |
Genes with expression patterns similar to MligTC455_55516
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_55516 | 6 | 0.12 | Mlig455_003582 | Neo: - Age: - |
1 | - | - | - | - | 1.000 | - | Mlig455_003582 {REF} {Length: 213} {NoTransDecoderORF} | |
| 2. | MligTC455_11266 | 15 | 0.31 | Mlig455_071025 | Neo: - Age: - |
0.976 | - | - | - | - | 0.976 | - | Mlig455_071025 {REF} {Length: 840} {NoTransDecoderORF} {RNA1509_35668} {RNA1310_23997.1} {RNA815_18824.1} | |
| 3. | MligTC455_42007 | 124 | 2.58 | Mlig455_018501 | Neo: - Age: - |
RAB19 | 0.976 | - | - | - | - | 0.976 | - | Mlig455_018501 {REF} {Length: 2460} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=184.8]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=110.8]; ADP-ribosylation factor family [PF00025.23, score=46.0]; 50S ribosome-binding GTPase [PF01926.25, score=20.5]; Gtr1/RagA G protein conserved region [PF04670.14, score=19.0]} {Human: ENSG00000146955, RAB19, RAB19, member RAS oncogene family, [RH, Score=210, Expect=1e-68]} {Mouse: ENSMUSG00000030055, Rab43, RAB43, member RAS oncogene family, [Score=214, Expect=2e-70]} {Dmel: FBgn0015793, Rab19, [Score=202, Expect=1e-65]} {Celegans: WBGene00004278, rab-19, RAB family, [Score=206, Expect=2e-67]} {Smed: dd_Smed_v6_2494_0_1, dd_Smed_v6_2494_0_1, [Score=225, Expect=5e-75]} {RNA1509_47323} {RNA1310_38772.1} {RNA815_20749} |
| 4. | MligTC455_19978 | 620 | 12.91 | Mlig455_012809 | Neo: - Age: - |
TLE3 | 0.966 | - | - | - | - | 0.966 | - | Mlig455_012809 {REF} {Length: 3455} {Pfam: Groucho/TLE N-terminal Q-rich domain [PF03920.17, score=185.1]; WD domain, G-beta repeat [PF00400.34, score=65.5]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=37.7]} {Human: ENSG00000140332, TLE3, transducin like enhancer of split 3, [RH, Score=753, Expect=0.0]; ENSG00000196781, TLE1, transducin like enhancer of split 1, [RH, Score=746, Expect=0.0]; ENSG00000106829, TLE4, transducin like enhancer of split 4, [RH, Score=738, Expect=0.0]} {Mouse: ENSMUSG00000032280, Tle3, transducin-like enhancer of split 3, [RH, Score=753, Expect=0.0]; ENSMUSG00000024642, Tle4, transducin-like enhancer of split 4, [RH, Score=738, Expect=0.0]} {Dmel: FBgn0001139, gro, groucho, [RH, Score=652, Expect=0.0]} {Celegans: WBGene00006773, unc-37, Transcription factor unc-37, [RH, Score=420, Expect=1e-137]} {Smed: dd_Smed_v6_4112_0_1, dd_Smed_v6_4112_0_1, [Score=504, Expect=2e-167]} {RNA1509_4212} {RNA1310_2371} {RNA815_5968} |
| 5. | MligTC455_15648 | 198 | 4.13 | Mlig455_030427, Mlig455_030477 | Neo: - Age: - |
0.961 | - | - | - | - | 0.961 | - | Mlig455_030427 {REF} {Length: 3286} {Smed: dd_Smed_v6_12269_0_1, dd_Smed_v6_12269_0_1, [Score=57.0, Expect=4e-09]} {RNA1509_50317} {RNA1310_26677} {RNA815_35533} Mlig455_030477 {REF} {Length: 3267} {Smed: dd_Smed_v6_12269_0_1, dd_Smed_v6_12269_0_1, [Score=56.6, Expect=5e-09]} {RNA1509_50317} {RNA1310_26677, RNA1509_50317} {RNA1509_50317, RNA815_35533} |
|
| 6. | MligTC455_50636 | 95 | 1.98 | Mlig455_007948, Mlig455_008048, Mlig455_008049 | Neo: - Age: - |
0.958 | - | - | - | - | 0.958 | - | Mlig455_007948 {REF} {Length: 3635} {TRANSSPLICED} {Pfam: Immunoglobulin domain [PF13927.8, score=22.0]; Ig-like C2-type domain [PF06328.13, score=21.9]; Immunoglobulin domain [PF00047.27, score=20.1]} {RNA1310_56409} {RNA815_31320} Mlig455_008048 {REF} {Length: 1059} {TRANSSPLICED} {Pfam: Immunoglobulin domain [PF13927.8, score=22.0]; Ig-like C2-type domain [PF06328.13, score=21.9]; Immunoglobulin domain [PF00047.27, score=20.1]} {RNA1310_56409} Mlig455_008049 {REF} {Length: 367} {NoTransDecoderORF} {RNA1310_117876} |
|
| 7. | MligTC455_24888 | 155 | 3.23 | Mlig455_019084, Mlig455_064280 | Neo: - Age: Up-Down-Up |
0.955 | - | - | - | - | 0.955 | - | Mlig455_019084 {REF} {Length: 3521} {RNA1509_35560, RNA1509_47523} {RNA1310_18618, RNA1509_35560, RNA1509_47523} {RNA1509_35560, RNA1509_47523, RNA815_20762} Mlig455_064280 {REF} {Length: 211} {NoTransDecoderORF} {RNA1509_47523} {RNA1310_25677.2} {RNA815_20762} |
|
| 8. | MligTC455_37600 | 19 | 0.4 | Mlig455_067977 | Neo: - Age: - |
0.951 | - | - | - | - | 0.951 | - | Mlig455_067977 {REF} {Length: 2477} {RNA1509_57193} {RNA1310_37430} {RNA815_45788} |
Berezikov Lab - 2020-2021 © ERIBA