M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_56114

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_56114 10 0.20 Mlig455_062554

Neo: -

Age: -

 Mlig455_062554 {REF} {Length: 435} {NoTransDecoderORF} {RNA1509_2762} {RNA1310_23298} {RNA815_59053.1}

Cumulative graph for MligTC455_56114

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_56114

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_56114 10 0.2 Mlig455_062554

Neo: -

Age: -

 1 - - - - - 1.000 Mlig455_062554 {REF} {Length: 435} {NoTransDecoderORF} {RNA1509_2762} {RNA1310_23298} {RNA815_59053.1}
2. MligTC455_47544 42 0.88 Mlig455_055595, Mlig455_055624

Neo: -

Age: -

 RASL10B 0.994 - - - - - 0.994

Mlig455_055595 {REF} {Length: 1887} {Pfam: Ras family [PF00071.24, score=75.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=34.0]; AAA ATPase domain [PF13191.8, score=20.2]} {Human: ENSG00000270885, RASL10B, RAS like family 10 member B, [Score=151, Expect=2e-44]} {Mouse: ENSMUSG00000020684, Rasl10b, RAS-like, family 10, member B, [Score=151, Expect=2e-44]} {Dmel: FBgn0037326, CG14669, [Score=112, Expect=1e-28]} {Celegans: WBGene00004307, rap-1, Ras-related protein Rap-1, [Score=54.7, Expect=7e-09]} {Smed: dd_Smed_v6_13540_0_1, dd_Smed_v6_13540_0_1, [Score=186, Expect=3e-57]} {RNA1310_59421} {RNA815_58204}

Mlig455_055624 {REF} {Length: 1840} {Pfam: Ras family [PF00071.24, score=74.4]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=33.3]; AAA ATPase domain [PF13191.8, score=19.8]} {Human: ENSG00000270885, RASL10B, RAS like family 10 member B, [Score=150, Expect=4e-44]} {Mouse: ENSMUSG00000020684, Rasl10b, RAS-like, family 10, member B, [Score=152, Expect=6e-45]} {Dmel: FBgn0037326, CG14669, [Score=111, Expect=2e-28]} {Celegans: WBGene00004307, rap-1, Ras-related protein Rap-1, [Score=56.2, Expect=2e-09]} {Smed: dd_Smed_v6_13540_0_1, dd_Smed_v6_13540_0_1, [Score=186, Expect=3e-57]} {RNA1310_59421} {RNA815_58204}
3. MligTC455_32740 3 0.06 Mlig455_055569

Neo: -

Age: -

 NYNRIN 0.967 - - - - - 0.967 Mlig455_055569 {REF} {Length: 5134} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=119.3]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=106.5]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=62.2]; Integrase zinc binding domain [PF17921.3, score=57.3]; Integrase core domain [PF00665.28, score=48.5]; Integrase core domain [PF13683.8, score=21.1]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=74.3, Expect=1e-12]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=71.6, Expect=7e-12]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=279, Expect=4e-78]} {RNA1509_23236} {RNA1310_35877} {RNA815_23350}
4. MligTC455_02244 25 0.53 Mlig455_026007, Mlig455_070432

Neo: -

Age: -

 0.959 - - - - - 0.959

Mlig455_026007 {REF} {Length: 604} {Smed: dd_Smed_v6_3944_0_1, dd_Smed_v6_3944_0_1, [Score=91.3, Expect=3e-24]} {RNA1310_143494}

Mlig455_070432 {REF} {Length: 1561} {Dmel: FBgn0050419, CG30419, [RH, Score=61.6, Expect=1e-11]} {Smed: dd_Smed_v6_3944_0_1, dd_Smed_v6_3944_0_1, [RH, Score=112, Expect=2e-32]} {RNA1310_143494}
5. MligTC455_06446 8 0.16 Mlig455_029900

Neo: -

Age: -

 SETMAR 0.959 - - - - - 0.959 Mlig455_029900 {REF} {Length: 1117} {Pfam: HTH domain in Mos1 transposase [PF17906.3, score=37.7]; Homeodomain-like domain [PF13565.8, score=30.0]; Winged helix-turn helix [PF13551.8, score=27.0]; Homeodomain-like domain [PF13384.8, score=21.8]; Helix-turn-helix domain [PF13518.8, score=19.4]; Helix-turn-helix domain (DUF4817) [PF16087.7, score=19.2]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=77.0, Expect=3e-16]} {RNA1310_3855.1} {RNA815_19895}
6. MligTC455_46519 27 0.55 Mlig455_017079

Neo: -

Age: -

 GSX1 0.956 - - - - - 0.956 Mlig455_017079 {REF} {Length: 1597} {Pfam: Homeodomain [PF00046.31, score=74.9]} {Human: ENSG00000169840, GSX1, GS homeobox 1, [RH, Score=113, Expect=1e-28]; ENSG00000180613, GSX2, GS homeobox 2, [RH, Score=112, Expect=7e-28]} {Mouse: ENSMUSG00000035946, Gsx2, GS homeobox 2, [RH, Score=116, Expect=2e-29]; ENSMUSG00000053129, Gsx1, GS homeobox 1, [RH, Score=113, Expect=8e-29]} {Dmel: FBgn0025776, ind, intermediate neuroblasts defective, [RH, Score=101, Expect=5e-24]} {Celegans: WBGene00003024, lin-39, Homeobox protein lin-39, [Score=84.0, Expect=2e-18]} {Smed: dd_Smed_v6_22992_0_1, dd_Smed_v6_22992_0_1, [Score=89.7, Expect=5e-20]} {RNA1509_16173} {RNA1310_59151} {RNA815_3140.1}
7. MligTC455_37135 7 0.15 Mlig455_066842

Neo: -

Age: -

 P2RX4 0.953 - - - - - 0.953 Mlig455_066842 {REF} {Length: 2017} {Pfam: ATP P2X receptor [PF00864.21, score=462.0]} {Human: ENSG00000135124, P2RX4, purinergic receptor P2X 4, [Score=362, Expect=2e-122]} {Mouse: ENSMUSG00000029470, P2rx4, purinergic receptor P2X, ligand-gated ion channel 4, [Score=343, Expect=2e-115]} {Smed: dd_Smed_v6_9166_0_1, dd_Smed_v6_9166_0_1, [RH, Score=404, Expect=2e-139]} {RNA1509_24762} {RNA1310_16818.1, RNA1509_24762} {RNA1509_24762, RNA815_22360}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA