M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_00820

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_00820 5 0.11 Mlig455_066101

Neo: -

Age: -

 Mlig455_066101 {REF} {Length: 166} {NoTransDecoderORF} {RNA1310_45089}

Cumulative graph for MligTC455_00820

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_00820

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_00820 5 0.11 Mlig455_066101

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_066101 {REF} {Length: 166} {NoTransDecoderORF} {RNA1310_45089}
2. MligTC455_05980 4 0.09 Mlig455_070057

Neo: -

Age: -

 0.996 - - - - 0.996 - Mlig455_070057 {REF} {Length: 365} {NoTransDecoderORF}
3. MligTC455_42293 28 0.59 Mlig455_053679

Neo: -

Age: -

 PIP5K1A 0.982 - - - - 0.982 - Mlig455_053679 {REF} {Length: 4383} {TRANSSPLICED} {Pfam: Phosphatidylinositol-4-phosphate 5-Kinase [PF01504.20, score=268.6]} {Human: ENSG00000143398, PIP5K1A, phosphatidylinositol-4-phosphate 5-kinase type 1 alpha, [RH, Score=416, Expect=1e-140]} {Mouse: ENSMUSG00000034902, Pip5k1c, phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma, [RH, Score=409, Expect=2e-136]; ENSMUSG00000024867, Pip5k1b, phosphatidylinositol-4-phosphate 5-kinase, type 1 beta, [RH, Score=404, Expect=7e-136]} {Dmel: FBgn0016984, sktl, skittles, [Score=434, Expect=2e-144]} {Celegans: WBGene00004087, ppk-1, PIP Kinase, [Score=409, Expect=6e-137]} {Smed: dd_Smed_v6_7632_0_3, dd_Smed_v6_7632_0_3, [Score=419, Expect=4e-142]} {RNA1509_47422} {RNA1310_16235.2, RNA1509_47422} {RNA1509_47422, RNA815_4999.1}
4. MligTC455_20392 28 0.59 Mlig455_020400

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_020400 {REF} {Length: 1475} {Pfam: Homeodomain-like domain [PF13384.8, score=25.9]; Helix-turn-helix domain [PF13518.8, score=24.2]} {RNA1509_28798} {RNA1310_89189} {RNA815_14917.2}
5. MligTC455_25712 19 0.39 Mlig455_025496, Mlig455_070512

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-1.657

 IRF1 0.969 - - - - 0.969 -

Mlig455_025496 {REF} {Length: 3038} {Pfam: Interferon regulatory factor transcription factor [PF00605.19, score=67.7]} {Human: ENSG00000125347, IRF1, interferon regulatory factor 1, [RH, Score=65.1, Expect=5e-12]} {Mouse: ENSMUSG00000018899, Irf1, interferon regulatory factor 1, [RH, Score=64.3, Expect=7e-12]} {Smed: dd_Smed_v6_6636_0_1, dd_Smed_v6_6636_0_1, [Score=50.4, Expect=2e-07]} {RNA1310_57908}

Mlig455_070512 {REF} {Length: 2957} {Pfam: Interferon regulatory factor transcription factor [PF00605.19, score=67.7]} {Human: ENSG00000125347, IRF1, interferon regulatory factor 1, [RH, Score=65.1, Expect=5e-12]} {Mouse: ENSMUSG00000018899, Irf1, interferon regulatory factor 1, [RH, Score=64.3, Expect=7e-12]} {Smed: dd_Smed_v6_6636_0_1, dd_Smed_v6_6636_0_1, [Score=50.4, Expect=2e-07]} {RNA1310_57908}
6. MligTC455_29398 20 0.42 Mlig455_060631

Neo: Int S/G2/M

Age: -

 RAPGEF2 0.969 - - - - 0.969 - Mlig455_060631 {REF} {Length: 3606} {TRANSSPLICED} {Pfam: RasGEF domain [PF00617.21, score=45.1]} {Human: ENSG00000109756, RAPGEF2, Rap guanine nucleotide exchange factor 2, [Score=132, Expect=1e-30]} {Mouse: ENSMUSG00000062232, Rapgef2, Rap guanine nucleotide exchange factor (GEF) 2, [Score=132, Expect=9e-31]} {Celegans: WBGene00004254, pxf-1, Rap guanine nucleotide exchange factor, [Score=111, Expect=1e-24]} {Smed: dd_Smed_v6_4950_0_4, dd_Smed_v6_4950_0_4, [Score=152, Expect=3e-37]} {RNA1509_46298} {RNA1310_2774.1} {RNA815_13348}
7. MligTC455_30694 3 0.06 Mlig455_042172

Neo: -

Age: -

 VIRMA 0.968 - - - - 0.968 - Mlig455_042172 {REF} {Length: 9345} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=121.8]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=119.0]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=72.1]; Integrase zinc binding domain [PF17921.3, score=65.5]; Virilizer, N-terminal [PF15912.7, score=64.6]; Integrase core domain [PF00665.28, score=49.3]; gag-polyprotein putative aspartyl protease [PF13975.8, score=27.3]; Aspartyl protease [PF13650.8, score=25.4]} {Human: ENSG00000164944, VIRMA, vir like m6A methyltransferase associated, [Score=139, Expect=6e-32]} {Mouse: ENSMUSG00000040720, Virma, vir like m6A methyltransferase associated, [Score=144, Expect=2e-33]} {Dmel: FBgn0003977, vir, virilizer, [RH, Score=90.1, Expect=3e-17]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=441, Expect=3e-131]} {RNA1509_2811, RNA1509_55457} {RNA1310_704.2, RNA1509_55457} {RNA1509_55457, RNA815_993.1}
8. MligTC455_26910 47 0.98 Mlig455_035560

Neo: -

Age: Down-Up-Up

Region-enriched R5: 3.334/0.00824

 0.966 - - - - 0.966 - Mlig455_035560 {REF} {Length: 2416} {Pfam: Fibronectin type III domain [PF00041.23, score=69.1]} {RNA1509_34253} {RNA1310_14514} {RNA815_6401.1}
9. MligTC455_26912 47 0.98 Mlig455_035582

Neo: Irradiation

Age: -

Region-enriched R5: 3.329/0.00846

 0.966 - - - - 0.966 - Mlig455_035582 {REF} {Length: 1346} {RNA1509_34253} {RNA1310_42580} {RNA815_5738.1}
10. MligTC455_06696 6 0.12 Mlig455_009522, Mlig455_009528

Neo: -

Age: -

 0.965 - - - - 0.965 -

Mlig455_009522 {REF} {Length: 678} {NoTransDecoderORF} {RNA1509_37202} {RNA1310_9003.1} {RNA815_46702}

Mlig455_009528 {REF} {Length: 545} {NoTransDecoderORF} {RNA1509_37202} {RNA1310_9003.1} {RNA815_46702}
11. MligTC455_06296 39 0.82 Mlig455_013095

Neo: -

Age: -

Region-enriched R7: 5.530/0.00000

 RDH12 0.964 - - - - 0.964 - Mlig455_013095 {REF} {Length: 2144} {Pfam: short chain dehydrogenase [PF00106.27, score=73.3]; Enoyl-(Acyl carrier protein) reductase [PF13561.8, score=41.9]} {Human: ENSG00000139988, RDH12, retinol dehydrogenase 12, [Score=139, Expect=6e-38]} {Mouse: ENSMUSG00000020621, Rdh14, retinol dehydrogenase 14 (all-trans and 9-cis), [Score=137, Expect=4e-37]; ENSMUSG00000021123, Rdh12, retinol dehydrogenase 12, [Score=132, Expect=3e-35]} {Dmel: FBgn0033205, CG2064, [Score=133, Expect=7e-36]} {Celegans: WBGene00000965, dhs-1, DeHydrogenases, Short chain, [RH, Score=101, Expect=3e-24]} {Smed: dd_Smed_v6_2096_0_1, dd_Smed_v6_2096_0_1, [Score=118, Expect=2e-30]} {RNA1310_45617} {RNA815_47495}
12. MligTC455_01210 4 0.09 Mlig455_054745

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_054745 {REF} {Length: 592} {NoTransDecoderORF} {RNA1310_27670}
13. MligTC455_07344 9 0.19 Mlig455_006405

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_006405 {REF} {Length: 1997} {TRANSSPLICED} {Mouse: ENSMUSG00000038522, Mfsd4b1, major facilitator superfamily domain containing 4B1, [Score=50.4, Expect=3e-06]} {RNA1509_32779} {RNA1310_62260.2} {RNA815_21675}
14. MligTC455_09135 161 3.36 Mlig455_037176, Mlig455_052329

Neo: -

Age: -

Region-enriched R3: 4.044/0.01634
Region-enriched R4: 3.756/0.02472

 0.957 - - - - 0.957 -

Mlig455_037176 {REF} {Length: 1527} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=33.7]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=32.2]; Ring finger domain [PF13639.8, score=27.3]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=23.1]; RING-type zinc-finger [PF13445.8, score=23.1]; zinc-RING finger domain [PF14634.8, score=22.4]; P-11 zinc finger [PF03854.16, score=20.8]; Rad50 zinc hook motif [PF04423.16, score=18.3]} {Dmel: FBgn0283649, elgi, early girl, [Score=48.5, Expect=3e-06]} {RNA1310_19383.1} {RNA815_9718}

Mlig455_052329 {REF} {Length: 1513} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=33.5]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=32.0]; Ring finger domain [PF13639.8, score=27.2]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=23.0]; RING-type zinc-finger [PF13445.8, score=23.0]; zinc-RING finger domain [PF14634.8, score=22.3]; P-11 zinc finger [PF03854.16, score=20.3]} {Dmel: FBgn0283649, elgi, early girl, [Score=48.5, Expect=3e-06]} {RNA1509_6428} {RNA1310_19383.1} {RNA815_9718}
15. MligTC455_12690 30 0.62 Mlig455_013764

Neo: Irradiation

Age: Up-Down-Down

 0.957 - - - - 0.957 - Mlig455_013764 {REF} {Length: 1033} {RNA1310_40888}
16. MligTC455_39712 6 0.14 Mlig455_065160

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_065160 {REF} {Length: 2258} {TRANSSPLICED} {RNA1509_28510} {RNA1310_44980.1} {RNA815_29995}
17. MligTC455_40690 15 0.31 Mlig455_070266

Neo: -

Age: Up-Up-Down

 0.957 - - - - 0.957 - Mlig455_070266 {REF} {Length: 141} {NoTransDecoderORF} {RNA1509_46782} {RNA1310_16030} {RNA815_8483}
18. MligTC455_17483 233 4.86 Mlig455_001376

Neo: Int S/G2/M

Age: -

 0.956 - - - - 0.956 - Mlig455_001376 {REF} {Length: 807} {TRANSSPLICED} {RNA1509_11159} {RNA1310_36431, RNA1509_11159} {RNA1509_11159, RNA815_22539}
19. MligTC455_04552 15 0.31 Mlig455_069681

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.677

 0.954 - - - - 0.954 - Mlig455_069681 {REF} {Length: 311} {NoTransDecoderORF} {RNA1509_12879} {RNA1310_633} {RNA815_23891.1}
20. MligTC455_10122 57 1.19 Mlig455_038355

Neo: -

Age: -

 SIK3 0.954 - - - - 0.954 - Mlig455_038355 {REF} {Length: 5615} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=228.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=119.7]; Kinase-like [PF14531.8, score=27.2]; Phosphotransferase enzyme family [PF01636.25, score=19.0]} {Human: ENSG00000160584, SIK3, SIK family kinase 3, [Score=324, Expect=1e-94]; ENSG00000170145, SIK2, salt inducible kinase 2, [Score=320, Expect=1e-95]; ENSG00000075413, MARK3, microtubule affinity regulating kinase 3, [Score=311, Expect=4e-94]} {Mouse: ENSMUSG00000034135, Sik3, SIK family kinase 3, [Score=325, Expect=3e-95]; ENSMUSG00000037112, Sik2, salt inducible kinase 2, [Score=323, Expect=1e-96]; ENSMUSG00000024042, Sik1, salt inducible kinase 1, [Score=311, Expect=7e-94]} {Dmel: FBgn0025625, Sik2, Salt-inducible kinase 2, [Score=326, Expect=2e-95]} {Celegans: WBGene00003916, par-1, Serine/threonine-protein kinase par-1, [Score=293, Expect=2e-85]} {Smed: dd_Smed_v6_8348_0_2, dd_Smed_v6_8348_0_2, [RH, Score=376, Expect=1e-113]} {RNA1509_14551} {RNA1310_21972.1} {RNA815_29595}
21. MligTC455_27205 4 0.09 Mlig455_068613

Neo: -

Age: -

 TFAP2B 0.954 - - - - 0.954 - Mlig455_068613 {REF} {Length: 2566} {Pfam: Transcription factor AP-2 [PF03299.16, score=222.4]} {Human: ENSG00000008196, TFAP2B, transcription factor AP-2 beta, [Score=229, Expect=8e-70]; ENSG00000116819, TFAP2E, transcription factor AP-2 epsilon, [Score=228, Expect=3e-69]; ENSG00000137203, TFAP2A, transcription factor AP-2 alpha, [Score=225, Expect=3e-68]; ENSG00000008197, TFAP2D, transcription factor AP-2 delta, [Score=225, Expect=5e-68]; ENSG00000087510, TFAP2C, transcription factor AP-2 gamma, [Score=219, Expect=5e-66]} {Mouse: ENSMUSG00000025927, Tfap2b, transcription factor AP-2 beta, [Score=229, Expect=4e-70]; ENSMUSG00000042477, Tfap2e, transcription factor AP-2, epsilon, [Score=228, Expect=2e-69]; ENSMUSG00000021359, Tfap2a, transcription factor AP-2, alpha, [Score=225, Expect=2e-68]; ENSMUSG00000042596, Tfap2d, transcription factor AP-2, delta, [Score=224, Expect=4e-68]; ENSMUSG00000028640, Tfap2c, transcription factor AP-2, gamma, [Score=223, Expect=2e-67]} {Dmel: FBgn0261953, TfAP-2, Transcription factor AP-2, [Score=213, Expect=1e-63]} {Celegans: WBGene00019424, aptf-1, Transcription factor aptf-1, [Score=171, Expect=5e-49]} {Smed: dd_Smed_v6_15104_0_1, dd_Smed_v6_15104_0_1, [Score=239, Expect=1e-72]} {RNA1310_45565} {RNA815_53390}
22. MligTC455_40416 3 0.07 Mlig455_019036

Neo: -

Age: Down-Up-Down

 0.954 - - - - 0.954 - Mlig455_019036 {REF} {Length: 1148} {NoTransDecoderORF} {RNA1509_49585} {RNA1310_32530, RNA1509_49585} {RNA1509_49585, RNA815_15772}
23. MligTC455_12399 11 0.23 Mlig455_016515

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_016515 {REF} {Length: 607} {NoTransDecoderORF} {RNA1509_18266} {RNA1310_103742} {RNA815_38946}
24. MligTC455_14965 4 0.08 Mlig455_032929

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_032929 {REF} {Length: 2468} {RNA1310_28993} {RNA815_35050}
25. MligTC455_24006 4 0.09 Mlig455_067508

Neo: -

Age: Up-Down-Down

 MAP4K3 0.952 - - - - 0.952 - Mlig455_067508 {REF} {Length: 3418} {Pfam: Protein kinase domain [PF00069.27, score=203.5]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=133.2]; CNH domain [PF00780.24, score=84.6]; ABC1 atypical kinase-like domain [PF03109.18, score=29.7]} {Human: ENSG00000011566, MAP4K3, mitogen-activated protein kinase kinase kinase kinase 3, [RH, Score=343, Expect=1e-103]; ENSG00000012983, MAP4K5, mitogen-activated protein kinase kinase kinase kinase 5, [RH, Score=338, Expect=7e-102]; ENSG00000168067, MAP4K2, mitogen-activated protein kinase kinase kinase kinase 2, [RH, Score=333, Expect=2e-100]} {Mouse: ENSMUSG00000024948, Map4k2, mitogen-activated protein kinase kinase kinase kinase 2, [RH, Score=453, Expect=8e-146]; ENSMUSG00000106850, Map4k2, mitogen-activated protein kinase kinase kinase kinase 2, [RH, Score=453, Expect=8e-146]} {Dmel: FBgn0263395, hppy, happyhour, [RH, Score=333, Expect=1e-97]} {Celegans: WBGene00022603, gck-2, Mitogen-activated protein kinase kinase kinase kinase, [RH, Score=324, Expect=2e-97]} {Smed: dd_Smed_v6_5913_0_2, dd_Smed_v6_5913_0_2, [RH, Score=501, Expect=6e-164]} {RNA1509_23212, RNA1509_28762, RNA1509_53460} {RNA1310_4243.1, RNA1509_23212, RNA1509_28762, RNA1509_53460} {RNA1509_23212, RNA1509_28762, RNA1509_53460, RNA815_7341}
26. MligTC455_15560 26 0.53 Mlig455_067953

Neo: Irradiation

Age: logFC(26M/2M)=0.383

 0.95 - - - - 0.950 - Mlig455_067953 {REF} {Length: 2539} {RNA1509_37382} {RNA1310_14412.2} {RNA815_19215}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA