M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_01487

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_01487 17 0.34 Mlig455_037695

Neo: -

Age: -

 Mlig455_037695 {REF} {Length: 240} {NoTransDecoderORF}

Cumulative graph for MligTC455_01487

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.505 0.573 1.00000 1.00000
RegionR2 2.743 0.573 0.99985 1.00000
RegionR3 1.053 0.573 1.00000 1.00000
RegionR4 -2.231 0.573 1.00000 1.00000
RegionR5 0.046 0.573 0.99994 1.00000
RegionR6 0.71 0.573 1.00000 1.00000
RegionR7 0.906 0.573 0.99991 1.00000
RegionR8 0.278 0.573 0.99989 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.618 0.573 0.99992 1.00000
RegenerationR2 1.183 0.573 1.00000 1.00000
RegenerationR3 2.445 0.573 0.99989 1.00000
RegenerationR4 1.082 0.573 0.99993 1.00000
RegenerationR5 0.251 0.573 0.99994 1.00000
RegenerationR6 0.221 0.573 0.99997 1.00000
RegenerationBL -0.289 0.573 0.99995 1.00000
RegenerationTP 4.029 0.573 0.99978 1.00000


Genes with expression patterns similar to MligTC455_01487

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_01487 17 0.34 Mlig455_037695

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_037695 {REF} {Length: 240} {NoTransDecoderORF}
2. MligTC455_31012 19 0.4 Mlig455_028966

Neo: -

Age: -

 0.978 - - - - 0.978 - Mlig455_028966 {REF} {Length: 2007} {RNA1509_4697} {RNA1310_228} {RNA815_19009}
3. MligTC455_08479 25 0.52 Mlig455_069908

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_069908 {REF} {Length: 1165} {RNA1310_92371} {RNA815_51913}
4. MligTC455_31548 14 0.29 Mlig455_049182

Neo: -

Age: Down-Down-Up

 0.971 - - - - 0.971 - Mlig455_049182 {REF} {Length: 5859} {Pfam: Putative DNA-binding domain [PF04326.16, score=32.7]} {RNA1509_47755} {RNA1310_4459.1, RNA1509_47755} {RNA1509_47755, RNA815_3355.1}
5. MligTC455_10265 15 0.31 Mlig455_050250

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_050250 {REF} {Length: 1184}
6. MligTC455_29468 155 3.23 Mlig455_038395, Mlig455_038601

Neo: -

Age: Up-Up-Down

Region-enriched R7: 4.536/0.00000

 SVEP1 0.966 - - - - 0.966 -

Mlig455_038395 {REF} {Length: 1918} {RNA1310_21924} {RNA815_33621}

Mlig455_038601 {REF} {Length: 3532} {Pfam: Tyrosine-protein kinase ephrin type A/B receptor-like [PF07699.15, score=81.8]; Nine Cysteines Domain of family 3 GPCR [PF07562.16, score=48.0]; TNFR/NGFR cysteine-rich region [PF00020.20, score=28.9]} {Human: ENSG00000165124, SVEP1, sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, [Score=55.8, Expect=1e-08]} {Mouse: ENSMUSG00000028369, Svep1, sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, [Score=52.8, Expect=9e-08]; ENSMUSG00000109446, Gm9195, predicted gene 9195, [Score=50.8, Expect=4e-07]} {Dmel: FBgn0031879, uif, uninflatable, [Score=50.1, Expect=5e-07]} {Smed: dd_Smed_v6_3432_0_1, dd_Smed_v6_3432_0_1, [Score=90.9, Expect=7e-22]} {RNA1310_21924} {RNA815_16704}
7. MligTC455_32535 32 0.67 Mlig455_058010

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_058010 {REF} {Length: 982} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_23515} {RNA1310_8675} {RNA815_3094.1}
8. MligTC455_07616 35 0.72 Mlig455_065059

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_065059 {REF} {Length: 1111} {TRANSSPLICED} {RNA1509_11880} {RNA1310_57329} {RNA815_53141}
9. MligTC455_30880 90 1.87 Mlig455_054161

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_054161 {REF} {Length: 649} {TRANSSPLICED} {RNA1509_13351} {RNA1310_56244} {RNA815_28747.1}
10. MligTC455_27838 246 5.12 Mlig455_060678

Neo: -

Age: Down-Down-Down

Regeneration-upregulated TP: 4.727

Regeneration-enriched TP: 4.727

 TRPM1 0.96 - - - - 0.960 - Mlig455_060678 {REF} {Length: 14356} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=81.6]; Ankyrin repeats (3 copies) [PF12796.9, score=80.1]; Ankyrin repeats (many copies) [PF13857.8, score=39.8]; Ankyrin repeat [PF13606.8, score=39.5]; Ankyrin repeat [PF00023.32, score=34.0]} {Human: ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=56.2, Expect=6e-07]; ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=56.2, Expect=5e-07]} {Mouse: ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=56.2, Expect=4e-07]; ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=54.3, Expect=1e-06]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=55.8, Expect=4e-07]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=58.2, Expect=6e-08]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [Score=97.1, Expect=4e-20]} {RNA1509_29189} {RNA1310_131.1} {RNA815_52.1}
11. MligTC455_31366 16 0.33 Mlig455_041051, Mlig455_041156, Mlig455_063067

Neo: -

Age: -

 DDX27 0.959 - - - - 0.959 -

Mlig455_041051 {REF} {Length: 1871} {Celegans: WBGene00015646, mlt-10, [Score=45.1, Expect=1e-05]} {Smed: dd_Smed_v6_6385_0_1, dd_Smed_v6_6385_0_1, [Score=41.6, Expect=1e-05]} {RNA1509_18097} {RNA1310_30023} {RNA815_5467.1}

Mlig455_041156 {REF} {Length: 1886} {Smed: dd_Smed_v6_6385_0_1, dd_Smed_v6_6385_0_1, [Score=45.8, Expect=4e-07]} {RNA1509_18097} {RNA1310_30023} {RNA815_5467.1}

Mlig455_063067 {REF} {Length: 4057} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=155.8]; Helicase conserved C-terminal domain [PF00271.33, score=97.5]; Ring finger domain [PF13639.8, score=35.1]; RING-H2 zinc finger domain [PF12678.9, score=24.8]; Anaphase-promoting complex subunit 11 RING-H2 finger [PF12861.9, score=19.1]} {Human: ENSG00000124228, DDX27, DEAD-box helicase 27, [RH, Score=531, Expect=2e-174]} {Mouse: ENSMUSG00000017999, Ddx27, DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, [RH, Score=516, Expect=3e-169]} {Dmel: FBgn0021995, Rs1, [RH, Score=493, Expect=7e-160]} {Celegans: WBGene00022148, ddx-27, DEAD boX helicase homolog, [RH, Score=504, Expect=4e-165]} {Smed: dd_Smed_v6_5413_0_1, dd_Smed_v6_5413_0_1, [RH, Score=469, Expect=2e-153]} {RNA1509_18097} {RNA1310_12300.1} {RNA815_2868}
12. MligTC455_12793 154 3.2 Mlig455_035462

Neo: -

Age: -

Region-enriched R2: 3.292/0.00953

 CSNK1D 0.955 - - - - 0.955 - Mlig455_035462 {REF} {Length: 2870} {Pfam: Protein kinase domain [PF00069.27, score=97.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=58.1]; Fungal protein kinase [PF17667.3, score=29.9]; Phosphotransferase enzyme family [PF01636.25, score=21.1]} {Human: ENSG00000141551, CSNK1D, casein kinase 1 delta, [RH, Score=578, Expect=0.0]; ENSG00000283900, TPTEP2-CSNK1E, TPTEP2-CSNK1E readthrough, [RH, Score=573, Expect=0.0]; ENSG00000213923, CSNK1E, casein kinase 1 epsilon, [RH, Score=573, Expect=0.0]} {Mouse: ENSMUSG00000025162, Csnk1d, casein kinase 1, delta, [RH, Score=578, Expect=0.0]; ENSMUSG00000022433, Csnk1e, casein kinase 1, epsilon, [RH, Score=574, Expect=0.0]} {Dmel: FBgn0002413, dco, discs overgrown, [RH, Score=529, Expect=0.0]} {Celegans: WBGene00002203, kin-20, Casein kinase I isoform delta, [RH, Score=499, Expect=1e-176]} {Smed: dd_Smed_v6_4561_0_1, dd_Smed_v6_4561_0_1, [RH, Score=577, Expect=0.0]} {RNA1509_19984} {RNA1310_23975} {RNA815_12595}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA