TomoSeq data search

Data search

Results for MligTC455_04187

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_04187	261	5.45	Mlig455_041536	Neo: - Age: -	SLIT2	Mlig455_041536 {REF} {Length: 3233} {Pfam: EGF-like domain [PF00008.29, score=134.3]; Human growth factor-like EGF [PF12661.9, score=87.7]; Laminin G domain [PF00054.25, score=62.9]; Laminin G domain [PF02210.26, score=59.4]; Leucine rich repeat [PF13855.8, score=46.5]; EGF-like domain [PF07974.15, score=37.6]; EGF domain [PF12947.9, score=29.8]; Calcium-binding EGF domain [PF07645.17, score=25.3]; Leucine Rich repeats (2 copies) [PF12799.9, score=22.3]} {Human: ENSG00000145147, SLIT2, slit guidance ligand 2, [Score=399, Expect=2e-122]} {Mouse: ENSMUSG00000031558, Slit2, slit guidance ligand 2, [Score=388, Expect=1e-118]; ENSMUSG00000056427, Slit3, slit guidance ligand 3, [Score=373, Expect=4e-113]} {Dmel: FBgn0264089, sli, slit, [Score=480, Expect=8e-153]} {Celegans: WBGene00004854, slt-1, Slit homolog 1 protein, [Score=413, Expect=2e-128]} {Smed: dd_Smed_v6_12111_0_1, dd_Smed_v6_12111_0_1, [Score=482, Expect=2e-153]} {RNA1509_4387} {RNA1310_1314.1} {RNA815_367}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_04187

261

5.45

Mlig455_041536

Neo: -

Age: -

SLIT2

Mlig455_041536 {REF} {Length: 3233} {Pfam: EGF-like domain [PF00008.29, score=134.3]; Human growth factor-like EGF [PF12661.9, score=87.7]; Laminin G domain [PF00054.25, score=62.9]; Laminin G domain [PF02210.26, score=59.4]; Leucine rich repeat [PF13855.8, score=46.5]; EGF-like domain [PF07974.15, score=37.6]; EGF domain [PF12947.9, score=29.8]; Calcium-binding EGF domain [PF07645.17, score=25.3]; Leucine Rich repeats (2 copies) [PF12799.9, score=22.3]} {Human: ENSG00000145147, SLIT2, slit guidance ligand 2, [Score=399, Expect=2e-122]} {Mouse: ENSMUSG00000031558, Slit2, slit guidance ligand 2, [Score=388, Expect=1e-118]; ENSMUSG00000056427, Slit3, slit guidance ligand 3, [Score=373, Expect=4e-113]} {Dmel: FBgn0264089, sli, slit, [Score=480, Expect=8e-153]} {Celegans: WBGene00004854, slt-1, Slit homolog 1 protein, [Score=413, Expect=2e-128]} {Smed: dd_Smed_v6_12111_0_1, dd_Smed_v6_12111_0_1, [Score=482, Expect=2e-153]} {RNA1509_4387} {RNA1310_1314.1} {RNA815_367}

Cumulative graph for MligTC455_04187

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-5.312	2.935	0.23284	0.87520
RegionR2	0.07	2.935	0.82965	1.00000
RegionR3	0.264	2.935	0.73349	1.00000
RegionR4	1.555	2.935	0.09140	0.28944
RegionR5	0.373	2.935	0.66765	1.00000
RegionR6	1.884	2.935	0.00484	0.10690
RegionR7	0.281	2.935	0.74536	1.00000
RegionR8	0.885	2.935	0.44851	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-0.298	2.935	1.00000	1.00000
RegenerationR2	-0.071	2.935	0.88555	1.00000
RegenerationR3	0.224	2.935	0.70672	0.95024
RegenerationR4	0.128	2.935	0.83841	1.00000
RegenerationR5	0.992	2.935	0.06476	0.40112
RegenerationR6	-0.832	2.935	0.11914	0.42426
RegenerationBL	-0.809	2.935	0.30422	0.66827
RegenerationTP	-0.294	2.935	0.71593	1.00000

Genes with expression patterns similar to MligTC455_04187

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_04187	261	5.45	Mlig455_041536	Neo: - Age: -	SLIT2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_041536 {REF} {Length: 3233} {Pfam: EGF-like domain [PF00008.29, score=134.3]; Human growth factor-like EGF [PF12661.9, score=87.7]; Laminin G domain [PF00054.25, score=62.9]; Laminin G domain [PF02210.26, score=59.4]; Leucine rich repeat [PF13855.8, score=46.5]; EGF-like domain [PF07974.15, score=37.6]; EGF domain [PF12947.9, score=29.8]; Calcium-binding EGF domain [PF07645.17, score=25.3]; Leucine Rich repeats (2 copies) [PF12799.9, score=22.3]} {Human: ENSG00000145147, SLIT2, slit guidance ligand 2, [Score=399, Expect=2e-122]} {Mouse: ENSMUSG00000031558, Slit2, slit guidance ligand 2, [Score=388, Expect=1e-118]; ENSMUSG00000056427, Slit3, slit guidance ligand 3, [Score=373, Expect=4e-113]} {Dmel: FBgn0264089, sli, slit, [Score=480, Expect=8e-153]} {Celegans: WBGene00004854, slt-1, Slit homolog 1 protein, [Score=413, Expect=2e-128]} {Smed: dd_Smed_v6_12111_0_1, dd_Smed_v6_12111_0_1, [Score=482, Expect=2e-153]} {RNA1509_4387} {RNA1310_1314.1} {RNA815_367}
2.	MligTC455_18016	454	9.45	Mlig455_039735, Mlig455_060893	Neo: - Age: -		0.978	-	-	-	-	-	0.978	Mlig455_039735 {REF} {Length: 1399} {RNA1509_35561} {RNA1310_52621} {RNA815_21429.1} Mlig455_060893 {REF} {Length: 1084} {TRANSSPLICED} {RNA1509_35561} {RNA1310_72970.1} {RNA815_18757.1}
3.	MligTC455_51585	883	18.39	Mlig455_039366	Neo: - Age: -		0.978	-	-	-	0.978	-	-	Mlig455_039366 {REF} {Length: 816} {NoTransDecoderORF} {RNA1509_26995, RNA1509_32506} {RNA1310_12597, RNA1509_26995} {RNA1509_26995, RNA815_24849}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts