M. lignano Tomo-Seq
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Results for MligTC455_05917

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_05917 13 0.26 Mlig455_028963

Neo: -

Age: -

 Mlig455_028963 {REF} {Length: 426} {NoTransDecoderORF} {RNA1509_23859} {RNA1310_19999} {RNA815_1199.8}

Cumulative graph for MligTC455_05917

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.519 0.684 1.00000 1.00000
RegionR2 2.007 0.684 1.00000 1.00000
RegionR3 -0.36 0.684 1.00000 1.00000
RegionR4 -0.851 0.684 1.00000 1.00000
RegionR5 -1.359 0.684 0.99946 1.00000
RegionR6 1.562 0.684 0.61016 1.00000
RegionR7 0.594 0.684 1.00000 1.00000
RegionR8 0.927 0.684 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.677 0.684 1.00000 1.00000
RegenerationR2 2.036 0.684 0.20836 0.65598
RegenerationR3 2.609 0.684 0.15341 0.58322
RegenerationR4 1.858 0.684 0.36854 0.79283
RegenerationR5 4.329 0.684 0.08568 0.45125
RegenerationR6 0.771 0.684 0.31226 0.65989
RegenerationBL 2.63 0.684 0.23826 0.59178
RegenerationTP 0.424 0.684 0.99982 1.00000


Genes with expression patterns similar to MligTC455_05917

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_05917 13 0.26 Mlig455_028963

Neo: -

Age: -

 2 - 1.000 - - 1.000 - Mlig455_028963 {REF} {Length: 426} {NoTransDecoderORF} {RNA1509_23859} {RNA1310_19999} {RNA815_1199.8}
2. MligTC455_37043 353 7.35 Mlig455_069044

Neo: Int S/G2/M

Age: -

 RFC5 0.98 - - - - 0.980 - Mlig455_069044 {REF} {Length: 2372} {TRANSSPLICED} {Pfam: Replication factor C C-terminal domain [PF08542.13, score=59.1]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=57.0]; DNA polymerase III, delta subunit [PF13177.8, score=52.5]; Rad17 P-loop domain [PF03215.17, score=28.7]; AAA domain [PF13401.8, score=23.9]; AAA C-terminal domain [PF16193.7, score=23.4]; AAA ATPase domain [PF13191.8, score=21.9]; AAA domain [PF13173.8, score=19.4]; AAA domain [PF13604.8, score=18.9]} {Human: ENSG00000111445, RFC5, replication factor C subunit 5, [RH, Score=411, Expect=1e-143]} {Mouse: ENSMUSG00000029363, Rfc5, replication factor C (activator 1) 5, [RH, Score=413, Expect=8e-145]} {Dmel: FBgn0032244, RfC3, Replication factor C subunit 3, [RH, Score=379, Expect=1e-131]} {Celegans: WBGene00018409, F44B9.8, Probable replication factor C subunit 5, [RH, Score=327, Expect=1e-110]} {Smed: dd_Smed_v6_5504_0_1, dd_Smed_v6_5504_0_1, [RH, Score=359, Expect=6e-124]} {RNA1509_20013} {RNA1310_24005, RNA1509_20013} {RNA1509_20013, RNA815_8700}
3. MligTC455_12747 22 0.46 Mlig455_046036

Neo: -

Age: -

 PRXL2C 0.969 - - - - 0.969 - Mlig455_046036 {REF} {Length: 937} {Pfam: AhpC/TSA antioxidant enzyme [PF13911.8, score=34.1]; AhpC/TSA family [PF00578.23, score=28.5]; Redoxin [PF08534.12, score=26.5]} {Human: ENSG00000158122, PRXL2C, peroxiredoxin like 2C, [RH, Score=137, Expect=1e-39]} {Mouse: ENSMUSG00000021482, Aaed1, AhpC/TSA antioxidant enzyme domain containing 1, [RH, Score=134, Expect=1e-38]} {Smed: dd_Smed_v6_4424_0_1, dd_Smed_v6_4424_0_1, [Score=135, Expect=1e-39]} {RNA1509_42365} {RNA1310_38096} {RNA815_19477}
4. MligTC455_24789 13 0.27 Mlig455_048511

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.721

 RAC1 0.96 - - - - 0.960 - Mlig455_048511 {REF} {Length: 2521} {Pfam: Ras family [PF00071.24, score=120.4]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=56.9]} {Human: ENSG00000136238, RAC1, Rac family small GTPase 1, [Score=196, Expect=7e-62]; ENSG00000169750, RAC3, Rac family small GTPase 3, [Score=189, Expect=2e-59]; ENSG00000128340, RAC2, Rac family small GTPase 2, [Score=189, Expect=3e-59]} {Mouse: ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [Score=196, Expect=5e-62]; ENSMUSG00000033220, Rac2, Rac family small GTPase 2, [Score=191, Expect=4e-60]; ENSMUSG00000018012, Rac3, Rac family small GTPase 3, [Score=189, Expect=1e-59]} {Dmel: FBgn0010333, Rac1, [Score=191, Expect=2e-60]} {Celegans: WBGene00000424, ced-10, Ras-related protein ced-10, [Score=191, Expect=2e-60]} {Smed: dd_Smed_v6_610_0_1, dd_Smed_v6_610_0_1, [Score=178, Expect=2e-55]} {RNA1509_5141} {RNA1310_6414} {RNA815_7410}

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