M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_12747

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_12747 22 0.46 Mlig455_046036

Neo: -

Age: -

 PRXL2C Mlig455_046036 {REF} {Length: 937} {Pfam: AhpC/TSA antioxidant enzyme [PF13911.8, score=34.1]; AhpC/TSA family [PF00578.23, score=28.5]; Redoxin [PF08534.12, score=26.5]} {Human: ENSG00000158122, PRXL2C, peroxiredoxin like 2C, [RH, Score=137, Expect=1e-39]} {Mouse: ENSMUSG00000021482, Aaed1, AhpC/TSA antioxidant enzyme domain containing 1, [RH, Score=134, Expect=1e-38]} {Smed: dd_Smed_v6_4424_0_1, dd_Smed_v6_4424_0_1, [Score=135, Expect=1e-39]} {RNA1509_42365} {RNA1310_38096} {RNA815_19477}

Cumulative graph for MligTC455_12747

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.671 0.822 0.99967 1.00000
RegionR2 -1.177 0.822 0.99973 1.00000
RegionR3 2.007 0.822 0.10032 0.55494
RegionR4 -0.62 0.822 0.82618 1.00000
RegionR5 -0.798 0.822 0.87614 1.00000
RegionR6 0.935 0.822 0.40421 0.97445
RegionR7 2.867 0.822 0.09600 0.59353
RegionR8 -1.543 0.822 0.99980 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.525 0.822 0.99999 1.00000
RegenerationR2 3.838 0.822 0.00761 0.13887
RegenerationR3 0.126 0.822 0.89632 1.00000
RegenerationR4 1.764 0.822 0.27734 0.72269
RegenerationR5 2.909 0.822 0.03986 0.32929
RegenerationR6 -1.84 0.822 0.26834 0.61845
RegenerationBL 2.758 0.822 0.13979 0.44558
RegenerationTP 1.446 0.822 0.54940 0.93246


Genes with expression patterns similar to MligTC455_12747

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_12747 22 0.46 Mlig455_046036

Neo: -

Age: -

 PRXL2C 3 - - - 1.000 1.000 1.000 Mlig455_046036 {REF} {Length: 937} {Pfam: AhpC/TSA antioxidant enzyme [PF13911.8, score=34.1]; AhpC/TSA family [PF00578.23, score=28.5]; Redoxin [PF08534.12, score=26.5]} {Human: ENSG00000158122, PRXL2C, peroxiredoxin like 2C, [RH, Score=137, Expect=1e-39]} {Mouse: ENSMUSG00000021482, Aaed1, AhpC/TSA antioxidant enzyme domain containing 1, [RH, Score=134, Expect=1e-38]} {Smed: dd_Smed_v6_4424_0_1, dd_Smed_v6_4424_0_1, [Score=135, Expect=1e-39]} {RNA1509_42365} {RNA1310_38096} {RNA815_19477}
2. MligTC455_24789 13 0.27 Mlig455_048511

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.721

 RAC1 0.988 - - - - 0.988 - Mlig455_048511 {REF} {Length: 2521} {Pfam: Ras family [PF00071.24, score=120.4]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=56.9]} {Human: ENSG00000136238, RAC1, Rac family small GTPase 1, [Score=196, Expect=7e-62]; ENSG00000169750, RAC3, Rac family small GTPase 3, [Score=189, Expect=2e-59]; ENSG00000128340, RAC2, Rac family small GTPase 2, [Score=189, Expect=3e-59]} {Mouse: ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [Score=196, Expect=5e-62]; ENSMUSG00000033220, Rac2, Rac family small GTPase 2, [Score=191, Expect=4e-60]; ENSMUSG00000018012, Rac3, Rac family small GTPase 3, [Score=189, Expect=1e-59]} {Dmel: FBgn0010333, Rac1, [Score=191, Expect=2e-60]} {Celegans: WBGene00000424, ced-10, Ras-related protein ced-10, [Score=191, Expect=2e-60]} {Smed: dd_Smed_v6_610_0_1, dd_Smed_v6_610_0_1, [Score=178, Expect=2e-55]} {RNA1509_5141} {RNA1310_6414} {RNA815_7410}
3. MligTC455_05917 13 0.26 Mlig455_028963

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_028963 {REF} {Length: 426} {NoTransDecoderORF} {RNA1509_23859} {RNA1310_19999} {RNA815_1199.8}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA