M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_06471

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_06471 198 4.13 Mlig455_004281

Neo: -

Age: -

 Mlig455_004281 {REF} {Length: 706} {NoTransDecoderORF} {RNA1509_50458} {RNA1310_57261} {RNA815_34491}

Cumulative graph for MligTC455_06471

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.023 2.693 0.28695 0.93886
RegionR2 1.447 2.693 0.12137 0.43126
RegionR3 0.185 2.693 0.77865 1.00000
RegionR4 1.908 2.693 0.02626 0.12359
RegionR5 0.769 2.693 0.37611 0.72954
RegionR6 0.809 2.693 0.38719 0.96375
RegionR7 -0.014 2.693 0.86536 1.00000
RegionR8 -0.081 2.693 0.88591 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.417 2.693 0.99992 1.00000
RegenerationR2 0.193 2.693 0.68263 0.94956
RegenerationR3 0.842 2.693 0.18042 0.61638
RegenerationR4 -0.232 2.693 0.70567 0.95542
RegenerationR5 0.697 2.693 0.17653 0.60613
RegenerationR6 0.516 2.693 0.41413 0.74694
RegenerationBL 1.269 2.693 0.13513 0.43799
RegenerationTP 1.196 2.693 0.19488 0.63408


Genes with expression patterns similar to MligTC455_06471

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_06471 198 4.13 Mlig455_004281

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_004281 {REF} {Length: 706} {NoTransDecoderORF} {RNA1509_50458} {RNA1310_57261} {RNA815_34491}
2. MligTC455_06472 436 9.09 Mlig455_004292, Mlig455_004367

Neo: -

Age: Up-Down-Up

Region-enriched R4: 1.429/0.04647

 5.794 0.979 0.984 0.962 0.893 0.980 0.996

Mlig455_004292 {REF} {Length: 2996} {TRANSSPLICED} {Pfam: Immunoglobulin domain [PF00047.27, score=24.0]; Immunoglobulin domain [PF13927.8, score=20.4]} {RNA1509_50458} {RNA1310_23534, RNA1509_50458} {RNA1509_50458, RNA815_16035}

Mlig455_004367 {REF} {Length: 3021} {TRANSSPLICED} {Pfam: Immunoglobulin domain [PF00047.27, score=24.0]; Immunoglobulin domain [PF13927.8, score=20.4]} {RNA1509_50458} {RNA1310_23534} {RNA815_16035}
3. MligTC455_44653 349 7.27 Mlig455_041792

Neo: -

Age: -

Region-enriched R4: 2.117/0.03430

 1.691 0.737 - - 0.954 - - Mlig455_041792 {REF} {Length: 2372} {TRANSSPLICED} {RNA1509_28675} {RNA1310_25238.1} {RNA815_6490}
4. MligTC455_33329 1576 32.82 Mlig455_054311

Neo: -

Age: -

 GAK 0.964 - - - - 0.964 - Mlig455_054311 {REF} {Length: 5653} {Pfam: Protein kinase domain [PF00069.27, score=149.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=109.5]; C2 domain of PTEN tumour-suppressor protein [PF10409.11, score=74.2]; DnaJ domain [PF00226.33, score=25.8]} {Human: ENSG00000178950, GAK, cyclin G associated kinase, [RH, Score=699, Expect=0.0]} {Mouse: ENSMUSG00000062234, Gak, cyclin G associated kinase, [RH, Score=704, Expect=0.0]} {Dmel: FBgn0037218, aux, auxilin, [RH, Score=445, Expect=2e-136]} {Celegans: WBGene00018516, tag-257, [RH, Score=174, Expect=2e-45]} {Smed: dd_Smed_v6_8561_0_1, dd_Smed_v6_8561_0_1, [RH, Score=604, Expect=0.0]} {RNA1509_43642, RNA1509_46970, RNA1509_6358, RNA1509_8143} {RNA1310_2152.1, RNA1509_43642, RNA1509_46970, RNA1509_6358, RNA1509_8143} {RNA1509_43642, RNA1509_46970, RNA1509_6358, RNA1509_8143, RNA815_9135}
5. MligTC455_33330 1581 32.93 Mlig455_054323

Neo: -

Age: -

 GAK 0.964 - - - - 0.964 - Mlig455_054323 {REF} {Length: 5415} {Pfam: Protein kinase domain [PF00069.27, score=143.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=95.7]; C2 domain of PTEN tumour-suppressor protein [PF10409.11, score=74.3]; DnaJ domain [PF00226.33, score=26.0]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=20.4]} {Human: ENSG00000178950, GAK, cyclin G associated kinase, [RH, Score=660, Expect=0.0]} {Mouse: ENSMUSG00000062234, Gak, cyclin G associated kinase, [RH, Score=664, Expect=0.0]} {Dmel: FBgn0037218, aux, auxilin, [Score=416, Expect=7e-126]} {Celegans: WBGene00018516, tag-257, [RH, Score=171, Expect=1e-44]} {Smed: dd_Smed_v6_8561_0_1, dd_Smed_v6_8561_0_1, [Score=441, Expect=1e-134]} {RNA1509_6358} {RNA1310_2152.1} {RNA815_9135}
6. MligTC455_20001 696 14.51 Mlig455_045409

Neo: -

Age: -

Region-enriched R2: 1.600/0.01572

 ITPKC 0.961 - - - - 0.961 - Mlig455_045409 {REF} {Length: 2425} {TRANSSPLICED} {Pfam: Inositol polyphosphate kinase [PF03770.18, score=97.8]} {Human: ENSG00000086544, ITPKC, inositol-trisphosphate 3-kinase C, [Score=255, Expect=1e-78]} {Mouse: ENSMUSG00000003752, Itpkc, inositol 1,4,5-trisphosphate 3-kinase C, [Score=254, Expect=2e-78]; ENSMUSG00000038855, Itpkb, inositol 1,4,5-trisphosphate 3-kinase B, [Score=245, Expect=4e-73]} {Dmel: FBgn0283680, IP3K2, Inositol 1,4,5-triphosphate kinase 2, [RH, Score=290, Expect=2e-92]} {Celegans: WBGene00002979, lfe-2, Inositol-trisphosphate 3-kinase homolog, [Score=197, Expect=1e-59]} {Smed: dd_Smed_v6_3687_0_2, dd_Smed_v6_3687_0_2, [RH, Score=264, Expect=3e-83]} {RNA1509_15857, RNA1509_31867} {RNA1310_14425, RNA1509_15857, RNA1509_31867} {RNA1509_15857, RNA1509_31867, RNA815_9558.1}
7. MligTC455_51114 678 14.12 Mlig455_040968, Mlig455_040981, Mlig455_056396

Neo: -

Age: Up-Down-Down

 SARM1 0.957 - - - 0.957 - -

Mlig455_040968 {REF} {Length: 6090} {Pfam: SAM domain (Sterile alpha motif) [PF07647.19, score=67.0]; SAM domain (Sterile alpha motif) [PF00536.32, score=54.1]; TIR domain [PF13676.8, score=35.6]} {Human: ENSG00000004139, SARM1, sterile alpha and TIR motif containing 1, [RH, Score=435, Expect=1e-139]} {Mouse: ENSMUSG00000050132, Sarm1, sterile alpha and HEAT/Armadillo motif containing 1, [RH, Score=449, Expect=3e-145]} {Dmel: FBgn0262579, Ect4, Ectoderm-expressed 4, [RH, Score=526, Expect=1e-165]} {Celegans: WBGene00006575, tir-1, Sterile alpha and TIR motif-containing protein tir-1, [RH, Score=421, Expect=2e-132]} {Smed: dd_Smed_v6_8112_0_1, dd_Smed_v6_8112_0_1, [RH, Score=519, Expect=6e-169]} {RNA1509_14475, RNA1509_29512} {RNA1310_15628, RNA1509_14475, RNA1509_29512} {RNA1509_14475, RNA1509_29512, RNA815_20619}

Mlig455_040981 {REF} {Length: 5305} {TRANSSPLICED} {Pfam: SAM domain (Sterile alpha motif) [PF07647.19, score=67.2]; SAM domain (Sterile alpha motif) [PF00536.32, score=54.2]; TIR domain [PF13676.8, score=35.5]} {Human: ENSG00000004139, SARM1, sterile alpha and TIR motif containing 1, [RH, Score=439, Expect=7e-142]} {Mouse: ENSMUSG00000050132, Sarm1, sterile alpha and HEAT/Armadillo motif containing 1, [RH, Score=453, Expect=2e-147]} {Dmel: FBgn0262579, Ect4, Ectoderm-expressed 4, [RH, Score=524, Expect=1e-165]} {Celegans: WBGene00006575, tir-1, Sterile alpha and TIR motif-containing protein tir-1, [RH, Score=423, Expect=1e-133]} {Smed: dd_Smed_v6_8112_0_1, dd_Smed_v6_8112_0_1, [RH, Score=522, Expect=1e-170]} {RNA1509_29512, RNA1509_38899} {RNA1310_15628, RNA1509_38899} {RNA1509_38899, RNA815_20619}

Mlig455_056396 {REF} {Length: 1358} {Mouse: ENSMUSG00000025272, Tro, trophinin, [Score=53.9, Expect=3e-07]} {RNA1509_29512} {RNA1310_15628} {RNA815_44994}
8. MligTC455_47696 1742 36.29 Mlig455_050774

Neo: -

Age: -

 SRRM1 0.952 - - - 0.952 - - Mlig455_050774 {REF} {Length: 3623} {Pfam: PWI domain [PF01480.19, score=80.7]} {Human: ENSG00000133226, SRRM1, serine and arginine repetitive matrix 1, [RH, Score=182, Expect=2e-47]} {Mouse: ENSMUSG00000028809, Srrm1, serine/arginine repetitive matrix 1, [RH, Score=183, Expect=7e-48]} {Dmel: FBgn0036340, SRm160, [RH, Score=168, Expect=4e-43]} {Celegans: WBGene00004706, rsr-1, SR protein related, [RH, Score=159, Expect=6e-41]} {Smed: dd_Smed_v6_3886_0_1, dd_Smed_v6_3886_0_1, [Score=169, Expect=9e-44]} {RNA1509_47406, RNA1509_48534} {RNA1310_944, RNA1509_47406} {RNA1509_47406, RNA815_383.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA