Data search


search
Exact
Search

Results for MligTC455_06472

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_06472 436 9.09 Mlig455_004292, Mlig455_004367

Neo: -

Age: Up-Down-Up

Region-enriched R4: 1.429/0.04647

Mlig455_004292 {REF} {Length: 2996} {TRANSSPLICED} {Pfam: Immunoglobulin domain [PF00047.27, score=24.0]; Immunoglobulin domain [PF13927.8, score=20.4]} {RNA1509_50458} {RNA1310_23534, RNA1509_50458} {RNA1509_50458, RNA815_16035}

Mlig455_004367 {REF} {Length: 3021} {TRANSSPLICED} {Pfam: Immunoglobulin domain [PF00047.27, score=24.0]; Immunoglobulin domain [PF13927.8, score=20.4]} {RNA1509_50458} {RNA1310_23534} {RNA815_16035}

Cumulative graph for MligTC455_06472

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.399 3.613 0.79388 1.00000
RegionR2 0.675 3.613 0.21866 0.58683
RegionR3 -0.456 3.613 0.35325 0.88900
RegionR4 1.429 3.613 0.00691 0.04647
RegionR5 0.172 3.613 0.68338 1.00000
RegionR6 0.176 3.613 0.71087 1.00000
RegionR7 -0.743 3.613 0.28681 0.92085
RegionR8 -0.855 3.613 0.30422 0.93629

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.45 3.613 0.31010 1.00000
RegenerationR2 0.044 3.613 0.91532 1.00000
RegenerationR3 0.501 3.613 0.33856 0.76281
RegenerationR4 -0.481 3.613 0.33705 0.76990
RegenerationR5 0.434 3.613 0.33339 0.75363
RegenerationR6 0.442 3.613 0.38325 0.72373
RegenerationBL 1.388 3.613 0.02234 0.16328
RegenerationTP 1.122 3.613 0.11218 0.51470


Genes with expression patterns similar to MligTC455_06472

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_06472 436 9.09 Mlig455_004292, Mlig455_004367

Neo: -

Age: Up-Down-Up

Region-enriched R4: 1.429/0.04647

6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_004292 {REF} {Length: 2996} {TRANSSPLICED} {Pfam: Immunoglobulin domain [PF00047.27, score=24.0]; Immunoglobulin domain [PF13927.8, score=20.4]} {RNA1509_50458} {RNA1310_23534, RNA1509_50458} {RNA1509_50458, RNA815_16035}

Mlig455_004367 {REF} {Length: 3021} {TRANSSPLICED} {Pfam: Immunoglobulin domain [PF00047.27, score=24.0]; Immunoglobulin domain [PF13927.8, score=20.4]} {RNA1509_50458} {RNA1310_23534} {RNA815_16035}
2. MligTC455_06471 198 4.13 Mlig455_004281

Neo: -

Age: -

5.794 0.979 0.984 0.962 0.893 0.980 0.996 Mlig455_004281 {REF} {Length: 706} {NoTransDecoderORF} {RNA1509_50458} {RNA1310_57261} {RNA815_34491}
3. MligTC455_31843 85 1.78 Mlig455_009356, Mlig455_021096

Neo: -

Age: -

2.562 - - 0.839 0.953 0.770 -

Mlig455_009356 {REF} {Length: 3278} {RNA1509_19124} {RNA1310_1437} {RNA815_889}

Mlig455_021096 {REF} {Length: 3285} {TRANSSPLICED} {RNA1509_19124} {RNA1310_1437} {RNA815_889}
4. MligTC455_50108 1530 31.88 Mlig455_030660

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.538

TRPM3 1.742 - - 0.791 0.951 - - Mlig455_030660 {REF} {Length: 3971} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=70.9]; Ankyrin repeats (many copies) [PF13637.8, score=67.2]; Ion transport protein [PF00520.33, score=59.6]; Ankyrin repeat [PF13606.8, score=58.7]; Ankyrin repeat [PF00023.32, score=45.3]; Ankyrin repeats (many copies) [PF13857.8, score=43.6]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=148, Expect=3e-35]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=150, Expect=3e-36]} {Dmel: FBgn0016920, nompC, no mechanoreceptor potential C, [Score=78.6, Expect=3e-14]} {Celegans: WBGene00001796, gtl-2, Gon-Two Like (TRP subfamily), [Score=81.6, Expect=2e-15]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [RH, Score=172, Expect=6e-44]} {RNA1509_2096} {RNA1310_2778.1} {RNA815_765}
5. MligTC455_27928 517 10.77 Mlig455_001032

Neo: -

Age: -

STK36 1.685 - - 0.734 0.951 - - Mlig455_001032 {REF} {Length: 5142} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=247.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=142.7]; ABC1 atypical kinase-like domain [PF03109.18, score=23.9]; HEAT repeat [PF02985.24, score=22.1]; Kinase-like [PF14531.8, score=20.6]} {Human: ENSG00000163482, STK36, serine/threonine kinase 36, [RH, Score=586, Expect=0.0]} {Mouse: ENSMUSG00000033276, Stk36, serine/threonine kinase 36, [RH, Score=591, Expect=0.0]} {Dmel: FBgn0001079, fu, fused, [RH, Score=290, Expect=1e-82]} {Celegans: WBGene00004789, sgk-1, Serine/threonine-protein kinase sgk-1, [Score=168, Expect=1e-44]} {Smed: dd_Smed_v6_11067_0_1, dd_Smed_v6_11067_0_1, [RH, Score=765, Expect=0.0]} {RNA1509_5397} {RNA1310_7915.1, RNA1509_5397} {RNA1509_5397, RNA815_4145}
6. MligTC455_44214 826 17.2 Mlig455_051977

Neo: -

Age: logFC(26M/2M)=-0.586

TRPM3 0.971 - - - 0.971 - - Mlig455_051977 {REF} {Length: 7693} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=181.9]; Ankyrin repeats (many copies) [PF13637.8, score=159.2]; Ankyrin repeat [PF13606.8, score=83.5]; Ankyrin repeats (many copies) [PF13857.8, score=69.7]; Ankyrin repeat [PF00023.32, score=40.0]; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily [PF13669.8, score=19.8]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=88.6, Expect=1e-16]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=88.6, Expect=7e-17]; ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=84.3, Expect=1e-15]} {Dmel: FBgn0016920, nompC, no mechanoreceptor potential C, [Score=77.8, Expect=1e-13]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=89.7, Expect=2e-17]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [Score=115, Expect=1e-25]} {RNA1509_3976, RNA1509_45452, RNA1509_49658} {RNA1310_537, RNA1509_3976, RNA1509_45452, RNA1509_49658} {RNA1509_3976, RNA1509_45452, RNA1509_49658, RNA815_57.1}
7. MligTC455_20001 696 14.51 Mlig455_045409

Neo: -

Age: -

Region-enriched R2: 1.600/0.01572

ITPKC 0.96 - - - - 0.960 - Mlig455_045409 {REF} {Length: 2425} {TRANSSPLICED} {Pfam: Inositol polyphosphate kinase [PF03770.18, score=97.8]} {Human: ENSG00000086544, ITPKC, inositol-trisphosphate 3-kinase C, [Score=255, Expect=1e-78]} {Mouse: ENSMUSG00000003752, Itpkc, inositol 1,4,5-trisphosphate 3-kinase C, [Score=254, Expect=2e-78]; ENSMUSG00000038855, Itpkb, inositol 1,4,5-trisphosphate 3-kinase B, [Score=245, Expect=4e-73]} {Dmel: FBgn0283680, IP3K2, Inositol 1,4,5-triphosphate kinase 2, [RH, Score=290, Expect=2e-92]} {Celegans: WBGene00002979, lfe-2, Inositol-trisphosphate 3-kinase homolog, [Score=197, Expect=1e-59]} {Smed: dd_Smed_v6_3687_0_2, dd_Smed_v6_3687_0_2, [RH, Score=264, Expect=3e-83]} {RNA1509_15857, RNA1509_31867} {RNA1310_14425, RNA1509_15857, RNA1509_31867} {RNA1509_15857, RNA1509_31867, RNA815_9558.1}
8. MligTC455_24939 1310 27.3 Mlig455_026523, Mlig455_026622

Neo: -

Age: -

PPP2R3A 0.955 - - - 0.955 - -

Mlig455_026523 {REF} {Length: 3635} {Pfam: EF-hand domain [PF17958.3, score=117.2]; EF-hand domain pair [PF13499.8, score=73.9]; EF hand [PF13202.8, score=24.3]; EF hand [PF00036.34, score=22.3]; EF-hand domain [PF13405.8, score=19.9]} {Human: ENSG00000073711, PPP2R3A, protein phosphatase 2 regulatory subunit B''alpha, [RH, Score=479, Expect=3e-151]; ENSG00000167393, PPP2R3B, protein phosphatase 2 regulatory subunit B''beta, [RH, Score=471, Expect=5e-155]; ENSG00000273850, PPP2R3B, protein phosphatase 2 regulatory subunit B''beta, [RH, Score=471, Expect=6e-155]; ENSG00000276438, PPP2R3B, protein phosphatase 2 regulatory subunit B''beta, [RH, Score=465, Expect=9e-153]} {Mouse: ENSMUSG00000043154, Ppp2r3a, protein phosphatase 2, regulatory subunit B'', alpha, [RH, Score=473, Expect=2e-149]} {Dmel: FBgn0038744, CG4733, [RH, Score=456, Expect=2e-145]} {Celegans: WBGene00018373, F43B10.1, [RH, Score=318, Expect=1e-91]} {Smed: dd_Smed_v6_14696_0_1, dd_Smed_v6_14696_0_1, [RH, Score=453, Expect=1e-147]} {RNA1509_6083} {RNA1310_2997} {RNA815_2584.1}

Mlig455_026622 {REF} {Length: 5428} {Pfam: EF-hand domain [PF17958.3, score=116.8]; EF-hand domain pair [PF13499.8, score=24.3]} {Human: ENSG00000073711, PPP2R3A, protein phosphatase 2 regulatory subunit B''alpha, [Score=243, Expect=3e-67]; ENSG00000273850, PPP2R3B, protein phosphatase 2 regulatory subunit B''beta, [Score=234, Expect=3e-67]; ENSG00000167393, PPP2R3B, protein phosphatase 2 regulatory subunit B''beta, [Score=234, Expect=2e-67]} {Mouse: ENSMUSG00000043154, Ppp2r3a, protein phosphatase 2, regulatory subunit B'', alpha, [Score=238, Expect=1e-65]} {Dmel: FBgn0038744, CG4733, [Score=224, Expect=6e-62]} {Celegans: WBGene00018373, F43B10.1, [Score=184, Expect=7e-50]} {Smed: dd_Smed_v6_11652_0_1, dd_Smed_v6_11652_0_1, [Score=206, Expect=3e-57]} {RNA1509_6083} {RNA1310_2997} {RNA815_2584.1}
9. MligTC455_48479 177 3.69 Mlig455_021312

Neo: Irradiation

Age: Up-Down-Up

TRIP4 0.955 - - - - 0.955 - Mlig455_021312 {REF} {Length: 3329} {TRANSSPLICED} {Pfam: Putative zinc finger motif, C2HC5-type [PF06221.15, score=27.9]} {Human: ENSG00000103671, TRIP4, thyroid hormone receptor interactor 4, [Score=68.2, Expect=9e-12]} {Mouse: ENSMUSG00000032386, Trip4, thyroid hormone receptor interactor 4, [Score=68.2, Expect=1e-11]} {Dmel: FBgn0031115, CG11710, [Score=60.8, Expect=1e-09]} {Celegans: WBGene00000208, asc-1, ASC-1; Activating Signal Cointegrator homolog, [Score=51.6, Expect=8e-07]} {Smed: dd_Smed_v6_9211_0_1, dd_Smed_v6_9211_0_1, [Score=67.4, Expect=7e-12]} {RNA1509_40916} {RNA1310_15797} {RNA815_22836}
10. MligTC455_47951 205 4.27 Mlig455_070893

Neo: -

Age: -

GRID2IP 0.954 - - - 0.954 - - Mlig455_070893 {REF} {Length: 3502} {Pfam: PDZ domain [PF00595.26, score=40.9]; PDZ domain [PF17820.3, score=32.7]; PDZ domain [PF13180.8, score=22.9]; RhoGEF domain [PF00621.22, score=18.8]} {Human: ENSG00000215045, GRID2IP, Grid2 interacting protein, [Score=57.4, Expect=7e-08]} {Mouse: ENSMUSG00000022580, Rhpn1, rhophilin, Rho GTPase binding protein 1, [Score=50.4, Expect=7e-06]; ENSMUSG00000010825, Grid2ip, glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1, [Score=50.1, Expect=1e-05]} {Dmel: FBgn0264598, PsGEF, Protostome-specific GEF, [Score=78.2, Expect=2e-14]} {Smed: dd_Smed_v6_12613_0_1, dd_Smed_v6_12613_0_1, [Score=55.8, Expect=5e-08]} {RNA1509_38079} {RNA1310_16413, RNA1509_38079} {RNA1509_38079, RNA815_31333}
11. MligTC455_37128 155 3.22 Mlig455_066474, Mlig455_066476

Neo: -

Age: -

0.953 - - - 0.953 - -

Mlig455_066474 {REF} {Length: 669} {Celegans: WBGene00022511, ZC53.4, [Score=68.6, Expect=3e-15]} {Smed: dd_Smed_v6_9974_1_2, dd_Smed_v6_9974_1_2, [Score=55.8, Expect=8e-11]} {RNA1509_53241} {RNA1310_47825} {RNA815_1671.1}

Mlig455_066476 {REF} {Length: 7427} {Pfam: Coilin N-terminus [PF15862.7, score=22.6]} {RNA1509_23774} {RNA1310_17710.2} {RNA815_1857}
12. MligTC455_22325 293 6.1 Mlig455_007051

Neo: -

Age: -

0.952 - - - 0.952 - - Mlig455_007051 {REF} {Length: 1749} {TRANSSPLICED} {RNA1509_22840} {RNA1310_17288} {RNA815_6634}
13. MligTC455_28124 49 1.02 Mlig455_017925

Neo: -

Age: -

0.952 - - - - 0.952 - Mlig455_017925 {REF} {Length: 1659} {NoTransDecoderORF} {RNA1509_13222} {RNA1310_34828.2} {RNA815_11419.1}
14. MligTC455_35987 923 19.24 Mlig455_031417

Neo: -

Age: Down-Up-Down

MAP4K5 0.951 - - - - 0.951 - Mlig455_031417 {REF} {Length: 4927} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=198.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=129.5]; CNH domain [PF00780.24, score=116.1]; ABC1 atypical kinase-like domain [PF03109.18, score=28.6]} {Human: ENSG00000012983, MAP4K5, mitogen-activated protein kinase kinase kinase kinase 5, [RH, Score=352, Expect=3e-107]; ENSG00000011566, MAP4K3, mitogen-activated protein kinase kinase kinase kinase 3, [RH, Score=346, Expect=1e-104]} {Mouse: ENSMUSG00000024948, Map4k2, mitogen-activated protein kinase kinase kinase kinase 2, [RH, Score=492, Expect=9e-161]; ENSMUSG00000106850, Map4k2, mitogen-activated protein kinase kinase kinase kinase 2, [RH, Score=492, Expect=9e-161]} {Dmel: FBgn0263395, hppy, happyhour, [RH, Score=329, Expect=3e-96]} {Celegans: WBGene00022603, gck-2, Mitogen-activated protein kinase kinase kinase kinase, [RH, Score=322, Expect=2e-96]} {Smed: dd_Smed_v6_5913_0_1, dd_Smed_v6_5913_0_1, [RH, Score=568, Expect=0.0]} {RNA1509_11811} {RNA1310_2202.1, RNA1509_11811} {RNA1509_11811, RNA815_1529}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA