M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_06878

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_06878 14 0.30 Mlig455_054354

Neo: -

Age: -

 Mlig455_054354 {REF} {Length: 593} {NoTransDecoderORF}

Cumulative graph for MligTC455_06878

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.833 0.639 0.99995 1.00000
RegionR2 3.089 0.639 0.99993 1.00000
RegionR3 0.527 0.639 0.99995 1.00000
RegionR4 -3.123 0.639 0.99982 1.00000
RegionR5 -0.78 0.639 0.99990 1.00000
RegionR6 0.031 0.639 0.99994 1.00000
RegionR7 1.301 0.639 0.99998 1.00000
RegionR8 1.788 0.639 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.709 0.639 0.99998 1.00000
RegenerationR2 1.824 0.639 0.99969 1.00000
RegenerationR3 1.407 0.639 0.99995 1.00000
RegenerationR4 2.472 0.639 0.99949 1.00000
RegenerationR5 0.85 0.639 0.99949 1.00000
RegenerationR6 2.217 0.639 0.99974 1.00000
RegenerationBL -1.398 0.639 0.99994 1.00000
RegenerationTP 0.921 0.639 0.99985 1.00000


Genes with expression patterns similar to MligTC455_06878

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_06878 14 0.3 Mlig455_054354

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_054354 {REF} {Length: 593} {NoTransDecoderORF}
2. MligTC455_15852 51 1.07 Mlig455_003883

Neo: -

Age: -

 BRF1 0.974 - - - - 0.974 - Mlig455_003883 {REF} {Length: 2870} {TRANSSPLICED} {Pfam: Transcription factor TFIIB repeat [PF00382.21, score=158.9]; Brf1-like TBP-binding domain [PF07741.15, score=57.5]; TFIIB zinc-binding [PF08271.14, score=40.6]; Cyclin, N-terminal domain [PF00134.25, score=23.2]} {Human: ENSG00000185024, BRF1, BRF1, RNA polymerase III transcription initiation factor subunit, [RH, Score=387, Expect=2e-123]} {Mouse: ENSMUSG00000011158, Brf1, BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit, [RH, Score=357, Expect=2e-112]} {Dmel: FBgn0038499, Brf, [RH, Score=330, Expect=2e-102]} {Celegans: WBGene00000271, brf-1, BRF (Transcription factor) homolog, [RH, Score=325, Expect=9e-100]} {Smed: dd_Smed_v6_1437_0_1, dd_Smed_v6_1437_0_1, [RH, Score=229, Expect=6e-66]} {RNA1509_17011} {RNA1310_6240.1} {RNA815_10656}
3. MligTC455_24844 70 1.45 Mlig455_016641, Mlig455_035592

Neo: -

Age: -

Region-enriched R4: 2.424/0.04540

 0.973 - - - - 0.973 -

Mlig455_016641 {REF} {Length: 2405} {Pfam: Calcium-activated potassium channel, beta subunit [PF03185.17, score=70.0]} {Smed: dd_Smed_v6_14020_0_1, dd_Smed_v6_14020_0_1, [RH, Score=145, Expect=5e-44]} {RNA1509_2024} {RNA1310_10624} {RNA815_8671}

Mlig455_035592 {REF} {Length: 632} {Pfam: Calcium-activated potassium channel, beta subunit [PF03185.17, score=70.0]} {Smed: dd_Smed_v6_14020_0_1, dd_Smed_v6_14020_0_1, [RH, Score=145, Expect=5e-44]} {RNA1310_10624} {RNA815_27265}
4. MligTC455_21145 21 0.44 Mlig455_027825

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_027825 {REF} {Length: 337} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_32404} {RNA1310_72214} {RNA815_47584}
5. MligTC455_40790 212 4.43 Mlig455_032027

Neo: Irradiation

Age: Up-Down-Down

Region-enriched R2: 2.642/0.01234

 PDE11A 0.965 - - - - 0.965 - Mlig455_032027 {REF} {Length: 3463} {Pfam: 3'5'-cyclic nucleotide phosphodiesterase [PF00233.21, score=143.6]; GAF domain [PF01590.28, score=84.0]; GAF domain [PF13185.8, score=50.1]; GAF domain [PF13492.8, score=44.7]} {Human: ENSG00000128655, PDE11A, phosphodiesterase 11A, [Score=407, Expect=3e-128]; ENSG00000138735, PDE5A, phosphodiesterase 5A, [Score=405, Expect=4e-128]} {Mouse: ENSMUSG00000075270, Pde11a, phosphodiesterase 11A, [Score=405, Expect=1e-127]; ENSMUSG00000053965, Pde5a, phosphodiesterase 5A, cGMP-specific, [Score=404, Expect=5e-128]} {Dmel: FBgn0085370, Pde11, Phosphodiesterase 11, [Score=417, Expect=1e-130]} {Celegans: WBGene00016328, pde-5, Probable 3',5'-cyclic phosphodiesterase pde-5, [Score=232, Expect=1e-65]} {Smed: dd_Smed_v6_8595_0_4, dd_Smed_v6_8595_0_4, [Score=441, Expect=6e-142]} {RNA1509_52520} {RNA1310_8630.1, RNA1509_52520} {RNA1509_52520, RNA815_26873}
6. MligTC455_12149 12 0.25 Mlig455_063109

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_063109 {REF} {Length: 163} {Pfam: Protein export membrane protein [PF02355.18, score=18.1]}
7. MligTC455_46844 1466 30.54 Mlig455_033495, Mlig455_069242

Neo: -

Age: -

Region-enriched R2: 3.929/0.00054

 0.964 - - - - 0.964 -

Mlig455_033495 {REF} {Length: 510} {RNA1509_52173} {RNA1310_82836} {RNA815_43043}

Mlig455_069242 {REF} {Length: 707} {RNA1509_33548, RNA1509_52173} {RNA1310_82836, RNA1509_33548, RNA1509_52173} {RNA1509_33548, RNA1509_52173, RNA815_43043}
8. MligTC455_29770 150 3.12 Mlig455_013548, Mlig455_041433

Neo: -

Age: -

 MAP3K19 0.96 - - - - 0.960 -

Mlig455_013548 {REF} {Length: 571} {NoTransDecoderORF} {RNA1509_6748} {RNA1310_95865} {RNA815_24422.1}

Mlig455_041433 {REF} {Length: 1974} {Pfam: Protein kinase domain [PF00069.27, score=69.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=55.3]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=84.0, Expect=3e-19]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=80.5, Expect=3e-18]} {Dmel: FBgn0266465, GckIII, Germinal centre kinase III, [Score=70.1, Expect=8e-15]} {Celegans: WBGene00003144, max-2, Serine/threonine-protein kinase max-2, [Score=61.2, Expect=5e-12]} {Smed: dd_Smed_v6_2030_0_29, dd_Smed_v6_2030_0_29, [Score=75.1, Expect=3e-18]} {RNA1509_48626} {RNA1310_17852.1} {RNA815_25899}
9. MligTC455_29482 49 1.03 Mlig455_016797

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_016797 {REF} {Length: 3680} {RNA1509_4722} {RNA1310_655.4} {RNA815_335.1}
10. MligTC455_42650 33 0.69 Mlig455_027379

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_027379 {REF} {Length: 661} {RNA1310_47424} {RNA815_44231}
11. MligTC455_35290 14 0.29 Mlig455_015751, Mlig455_049473

Neo: -

Age: -

 0.958 - - - - 0.958 -

Mlig455_015751 {REF} {Length: 1661} {RNA1509_27214} {RNA1310_93069} {RNA815_21353}

Mlig455_049473 {REF} {Length: 733} {RNA1310_93069}
12. MligTC455_31916 78 1.63 Mlig455_067080

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_067080 {REF} {Length: 1168} {NoTransDecoderORF} {RNA1509_48060} {RNA1310_6149} {RNA815_1772.1}
13. MligTC455_32241 156 3.24 Mlig455_063650

Neo: -

Age: -

Region-enriched R4: 3.105/0.02582

 MGLL 0.955 - - - - 0.955 - Mlig455_063650 {REF} {Length: 1932} {Pfam: Serine aminopeptidase, S33 [PF12146.10, score=135.3]; Alpha/beta hydrolase family [PF12697.9, score=39.2]; alpha/beta hydrolase fold [PF00561.22, score=34.4]; Prolyl oligopeptidase family [PF00326.23, score=21.7]} {Human: ENSG00000074416, MGLL, monoglyceride lipase, [Score=97.4, Expect=6e-23]} {Mouse: ENSMUSG00000033174, Mgll, monoglyceride lipase, [Score=106, Expect=2e-26]} {Smed: dd_Smed_v6_6796_0_1, dd_Smed_v6_6796_0_1, [Score=91.7, Expect=2e-21]} {RNA1509_47433} {RNA1310_29208} {RNA815_26468}
14. MligTC455_07660 50 1.04 Mlig455_023367

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_023367 {REF} {Length: 1957} {NoTransDecoderORF} {RNA1509_42657} {RNA1310_22857} {RNA815_19983}
15. MligTC455_19719 160 3.32 Mlig455_062741

Neo: -

Age: -

 ANKUB1 0.954 - - - - 0.954 - Mlig455_062741 {REF} {Length: 2758} {Pfam: Ubiquitin family [PF00240.25, score=30.6]} {Human: ENSG00000206199, ANKUB1, ankyrin repeat and ubiquitin domain containing 1, [Score=268, Expect=2e-81]} {Mouse: ENSMUSG00000074591, Ankub1, ankrin repeat and ubiquitin domain containing 1, [Score=248, Expect=3e-74]} {Smed: dd_Smed_v6_9027_0_1, dd_Smed_v6_9027_0_1, [Score=470, Expect=8e-159]} {RNA1509_38601} {RNA1310_11316.1} {RNA815_657.1}
16. MligTC455_22555 16 0.34 Mlig455_014043

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_014043 {REF} {Length: 1521} {RNA1509_57689} {RNA1310_98725} {RNA815_30060}
17. MligTC455_46518 283 5.9 Mlig455_004530, Mlig455_028532, Mlig455_064722

Neo: -

Age: -

 CHRNA4 0.954 - - - - 0.954 -

Mlig455_004530 {REF} {Length: 3050} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=183.3]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=126.0]} {Human: ENSG00000101204, CHRNA4, cholinergic receptor nicotinic alpha 4 subunit, [Score=261, Expect=4e-78]} {Mouse: ENSMUSG00000027577, Chrna4, cholinergic receptor, nicotinic, alpha polypeptide 4, [Score=250, Expect=7e-74]; ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=238, Expect=7e-71]; ENSMUSG00000022041, Chrna2, cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal), [Score=238, Expect=9e-71]} {Dmel: FBgn0266347, nAChRalpha4, nicotinic Acetylcholine Receptor alpha4, [Score=254, Expect=4e-77]} {Celegans: WBGene00006774, unc-38, Acetylcholine receptor subunit alpha-type unc-38, [Score=231, Expect=2e-68]} {Smed: dd_Smed_v6_8486_0_1, dd_Smed_v6_8486_0_1, [RH, Score=560, Expect=0.0]} {RNA1509_15763} {RNA1310_13813} {RNA815_7852}

Mlig455_028532 {REF} {Length: 6717} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=182.9]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=125.6]} {Human: ENSG00000101204, CHRNA4, cholinergic receptor nicotinic alpha 4 subunit, [Score=262, Expect=1e-77]} {Mouse: ENSMUSG00000027577, Chrna4, cholinergic receptor, nicotinic, alpha polypeptide 4, [Score=250, Expect=3e-73]; ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=239, Expect=2e-70]; ENSMUSG00000022041, Chrna2, cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal), [Score=238, Expect=4e-70]} {Dmel: FBgn0266347, nAChRalpha4, nicotinic Acetylcholine Receptor alpha4, [Score=255, Expect=1e-76]} {Celegans: WBGene00006774, unc-38, Acetylcholine receptor subunit alpha-type unc-38, [Score=231, Expect=8e-68]} {Smed: dd_Smed_v6_8486_0_1, dd_Smed_v6_8486_0_1, [RH, Score=560, Expect=0.0]} {RNA1509_15763} {RNA1310_13813} {RNA815_7852}

Mlig455_064722 {REF} {Length: 349} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=26.8]} {Smed: dd_Smed_v6_8486_0_1, dd_Smed_v6_8486_0_1, [Score=75.9, Expect=3e-17]} {RNA1509_15763} {RNA1310_15286} {RNA815_7852}
18. MligTC455_04855 16 0.34 Mlig455_005010, Mlig455_005053, Mlig455_005260

Neo: -

Age: logFC(26M/2M)=0.904

 HCRTR2 0.953 - - - - 0.953 -

Mlig455_005010 {REF} {Length: 1532} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=156.6]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=29.4]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=25.7]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=23.9]} {Human: ENSG00000137252, HCRTR2, hypocretin receptor 2, [RH, Score=207, Expect=5e-61]} {Mouse: ENSMUSG00000032360, Hcrtr2, hypocretin (orexin) receptor 2, [Score=209, Expect=7e-62]} {Dmel: FBgn0038880, SIFaR, SIFamide receptor, [Score=150, Expect=8e-39]} {Celegans: WBGene00022004, npr-22, NeuroPeptide Receptor family, [Score=119, Expect=4e-29]} {Smed: dd_Smed_v6_22624_0_1, dd_Smed_v6_22624_0_1, [RH, Score=215, Expect=7e-65]} {RNA1310_58724} {RNA815_36016}

Mlig455_005053 {REF} {Length: 3639} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=156.6]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=29.4]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=25.7]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=23.9]} {Human: ENSG00000137252, HCRTR2, hypocretin receptor 2, [RH, Score=210, Expect=6e-62]} {Mouse: ENSMUSG00000032360, Hcrtr2, hypocretin (orexin) receptor 2, [Score=211, Expect=1e-62]} {Dmel: FBgn0038880, SIFaR, SIFamide receptor, [Score=150, Expect=7e-39]} {Celegans: WBGene00022004, npr-22, NeuroPeptide Receptor family, [Score=119, Expect=3e-29]} {Smed: dd_Smed_v6_22624_0_1, dd_Smed_v6_22624_0_1, [RH, Score=215, Expect=6e-65]} {RNA1310_58724} {RNA815_36016}

Mlig455_005260 {REF} {Length: 1614} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=156.6]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=29.4]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=25.7]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=23.9]} {Human: ENSG00000137252, HCRTR2, hypocretin receptor 2, [RH, Score=210, Expect=6e-62]} {Mouse: ENSMUSG00000032360, Hcrtr2, hypocretin (orexin) receptor 2, [Score=211, Expect=1e-62]} {Dmel: FBgn0038880, SIFaR, SIFamide receptor, [Score=150, Expect=7e-39]} {Celegans: WBGene00022004, npr-22, NeuroPeptide Receptor family, [Score=119, Expect=3e-29]} {Smed: dd_Smed_v6_22624_0_1, dd_Smed_v6_22624_0_1, [RH, Score=215, Expect=6e-65]} {RNA1310_58724} {RNA815_36016}
19. MligTC455_52081 79 1.64 Mlig455_025698, Mlig455_025723

Neo: -

Age: -

Region-enriched R8: 4.583/0.03342

 SLC22A3 0.953 - - - - 0.953 -

Mlig455_025698 {REF} {Length: 2167} {Pfam: Sugar (and other) transporter [PF00083.26, score=88.1]; Major Facilitator Superfamily [PF07690.18, score=58.6]} {Human: ENSG00000146477, SLC22A3, solute carrier family 22 member 3, [Score=203, Expect=3e-57]; ENSG00000112499, SLC22A2, solute carrier family 22 member 2, [Score=199, Expect=1e-55]; ENSG00000197375, SLC22A5, solute carrier family 22 member 5, [Score=194, Expect=5e-54]; ENSG00000197901, SLC22A6, solute carrier family 22 member 6, [Score=193, Expect=1e-53]} {Mouse: ENSMUSG00000023828, Slc22a3, solute carrier family 22 (organic cation transporter), member 3, [Score=199, Expect=5e-56]; ENSMUSG00000040966, Slc22a2, solute carrier family 22 (organic cation transporter), member 2, [Score=196, Expect=6e-55]; ENSMUSG00000023829, Slc22a1, solute carrier family 22 (organic cation transporter), member 1, [Score=194, Expect=4e-54]; ENSMUSG00000063652, Slc22a21, solute carrier family 22 (organic cation transporter), member 21, [Score=192, Expect=2e-53]; ENSMUSG00000024650, Slc22a6, solute carrier family 22 (organic anion transporter), member 6, [Score=191, Expect=3e-53]} {Dmel: FBgn0019952, Orct, Organic cation transporter, [Score=204, Expect=4e-58]} {Celegans: WBGene00022348, Y82E9BR.16, [Score=159, Expect=1e-41]} {Smed: dd_Smed_v6_10903_0_1, dd_Smed_v6_10903_0_1, [Score=186, Expect=7e-52]} {RNA1310_48310} {RNA815_24964}

Mlig455_025723 {REF} {Length: 199} {NoTransDecoderORF}
20. MligTC455_03110 58 1.2 Mlig455_069260

Neo: -

Age: -

 GABBR2 0.95 - - - - 0.950 - Mlig455_069260 {REF} {Length: 6190} {TRANSSPLICED} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=150.8]; Receptor family ligand binding region [PF01094.30, score=121.6]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=259, Expect=1e-73]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=255, Expect=2e-72]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=238, Expect=4e-66]} {Celegans: WBGene00021528, gbb-1, GABA B receptor subunit; GABAB1 receptor subunit, [Score=223, Expect=8e-62]} {Smed: dd_Smed_v6_59890_0_1, dd_Smed_v6_59890_0_1, [Score=112, Expect=1e-28]} {RNA1509_59815} {RNA1310_19655} {RNA815_19308}
21. MligTC455_45537 189 3.94 Mlig455_060669

Neo: -

Age: Up-Down-Up

 NPR1 0.95 - - - - 0.950 - Mlig455_060669 {REF} {Length: 2668} {Pfam: Adenylate and Guanylate cyclase catalytic domain [PF00211.22, score=200.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=56.3]; Protein kinase domain [PF00069.27, score=41.4]} {Human: ENSG00000169418, NPR1, natriuretic peptide receptor 1, [Score=382, Expect=4e-123]; ENSG00000159899, NPR2, natriuretic peptide receptor 2, [Score=375, Expect=9e-121]} {Mouse: ENSMUSG00000027931, Npr1, natriuretic peptide receptor 1, [Score=394, Expect=7e-128]; ENSMUSG00000028469, Npr2, natriuretic peptide receptor 2, [Score=377, Expect=9e-126]} {Dmel: FBgn0051183, CG31183, [Score=374, Expect=8e-118]} {Celegans: WBGene00020131, gcy-28, Receptor-type guanylate cyclase gcy-28, [Score=348, Expect=1e-109]} {Smed: dd_Smed_v6_14331_0_1, dd_Smed_v6_14331_0_1, [Score=429, Expect=4e-141]} {RNA1509_50551} {RNA1310_4016.1} {RNA815_2101.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA